mRNA_H-paniculata_contig18520.4566.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18520.4566.1
Unique NamemRNA_H-paniculata_contig18520.4566.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18520.4566.1 vs. uniprot
Match: A0A6H5JX72_9PHAE (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX72_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.210e-13
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 RVILAVGHSSRKVYERLLESGVRLEAKGIAVGFRIEHPQV 120
            RVILAVGHS+R +YERLL+SGV LEAKGIAVGFRIEHPQV
Sbjct:  480 RVILAVGHSARPLYERLLDSGVGLEAKGIAVGFRIEHPQV 519
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BLAST of mRNA_H-paniculata_contig18520.4566.1 vs. uniprot
Match: D7FIX4_ECTSI (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX4_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 5.630e-13
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 RVILAVGHSSRKVYERLLESGVRLEAKGIAVGFRIEHPQ 117
            RVILAVGHS+R +YERLL+SGV LEAKGIAVGFRIEHPQ
Sbjct:  349 RVILAVGHSARPLYERLLDSGVSLEAKGIAVGFRIEHPQ 387
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BLAST of mRNA_H-paniculata_contig18520.4566.1 vs. uniprot
Match: A0A4Q0J008_9BACT (FAD-binding protein n=1 Tax=Muribaculaceae bacterium Isolate-002 (NCI) TaxID=2489215 RepID=A0A4Q0J008_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 1.890e-9
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    4 VILAVGHSSRKVYERLLESGVRLEAKGIAVGFRIEHPQVCADSTVIEAEQNAG 162
            VI+A GHS+R  Y  LL+SGV LE KGIA+G R+EHPQ   DS    + Q  G
Sbjct:  248 VIIATGHSARDTYRMLLDSGVALEPKGIAIGVRLEHPQQLIDSIQYHSPQGRG 300
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BLAST of mRNA_H-paniculata_contig18520.4566.1 vs. uniprot
Match: A0A1B1SAQ5_9BACT (FAD-binding protein n=4 Tax=Muribaculaceae TaxID=2005473 RepID=A0A1B1SAQ5_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 2.590e-9
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    4 VILAVGHSSRKVYERLLESGVRLEAKGIAVGFRIEHPQVCADSTVIEAEQNAG 162
            VILA GHS+R VYE L  +GV LEAKG+A+G R+EHPQ   D     + Q  G
Sbjct:  245 VILATGHSARDVYESLAAAGVELEAKGLAIGVRLEHPQQFVDRLQYHSPQGRG 297
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BLAST of mRNA_H-paniculata_contig18520.4566.1 vs. uniprot
Match: A0A1Z5JW41_FISSO (DAO domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JW41_FISSO)

HSP 1 Score: 60.1 bits (144), Expect = 3.550e-9
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    4 VILAVGHSSRKVYERLLESGVRLEAKGIAVGFRIEHPQ 117
            V+LA GHS+R +YE+L  SGV+LE KG AVGFRIEHPQ
Sbjct:  363 VVLATGHSARDIYEQLHASGVKLEPKGFAVGFRIEHPQ 400
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BLAST of mRNA_H-paniculata_contig18520.4566.1 vs. uniprot
Match: A0A1Z5KC34_FISSO (DAO domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KC34_FISSO)

HSP 1 Score: 60.1 bits (144), Expect = 3.550e-9
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    4 VILAVGHSSRKVYERLLESGVRLEAKGIAVGFRIEHPQ 117
            V+LA GHS+R +YE+L  SGV+LE KG AVGFRIEHPQ
Sbjct:  411 VVLATGHSARDIYEQLHASGVKLEPKGFAVGFRIEHPQ 448
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BLAST of mRNA_H-paniculata_contig18520.4566.1 vs. uniprot
Match: A0A1Q6EDZ7_9BACT (FAD-binding protein n=1 Tax=Bacteroidales bacterium 52_46 TaxID=1897040 RepID=A0A1Q6EDZ7_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 4.840e-9
Identity = 29/53 (54.72%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:    4 VILAVGHSSRKVYERLLESGVRLEAKGIAVGFRIEHPQVCADSTVIEAEQNAG 162
            VILA GHS+R  Y  LL+SGV +E KGIA+G R+EHPQ   DS      Q  G
Sbjct:  247 VILATGHSARDTYRMLLDSGVAIEPKGIAIGVRLEHPQQLIDSIQYHNPQGRG 299
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BLAST of mRNA_H-paniculata_contig18520.4566.1 vs. uniprot
Match: R5AP72_9BACT (Uncharacterized protein n=1 Tax=Prevotella sp. CAG:1031 TaxID=1262917 RepID=R5AP72_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 6.620e-9
Identity = 30/53 (56.60%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    4 VILAVGHSSRKVYERLLESGVRLEAKGIAVGFRIEHPQVCADSTVIEAEQNAG 162
            VILA GHS+R VY+ L   GV LEAKGIA+G R+EHPQ   DS    + Q  G
Sbjct:  243 VILATGHSARDVYKMLNSEGVALEAKGIAMGVRLEHPQSLIDSLRYHSAQGRG 295
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BLAST of mRNA_H-paniculata_contig18520.4566.1 vs. uniprot
Match: A0A7S2UEH4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEH4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.710e-9
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    4 VILAVGHSSRKVYERLLESGVRLEAKGIAVGFRIEHPQ 117
            ++LA GHS+R VYE L   GV+LEAKG A GFRIEHPQ
Sbjct:    8 IVLATGHSARDVYEELHAEGVKLEAKGFAAGFRIEHPQ 45
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BLAST of mRNA_H-paniculata_contig18520.4566.1 vs. uniprot
Match: A0A4S4GMK9_9BACT (FAD-binding protein (Fragment) n=1 Tax=Muribaculaceae bacterium TaxID=2498093 RepID=A0A4S4GMK9_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 8.350e-9
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    4 VILAVGHSSRKVYERLLESGVRLEAKGIAVGFRIEHPQVCADSTVIEAEQNAG 162
            VI+A GHS+R VYE L+E GV LE KGIAVG R+EHPQ   D     + +  G
Sbjct:  244 VIMATGHSARDVYEMLIEHGVTLEPKGIAVGCRLEHPQHLIDCIQYHSPKGRG 296
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18520.4566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JX72_9PHAE2.210e-1387.50FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
D7FIX4_ECTSI5.630e-1387.18FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
A0A4Q0J008_9BACT1.890e-954.72FAD-binding protein n=1 Tax=Muribaculaceae bacteri... [more]
A0A1B1SAQ5_9BACT2.590e-954.72FAD-binding protein n=4 Tax=Muribaculaceae TaxID=2... [more]
A0A1Z5JW41_FISSO3.550e-971.05DAO domain-containing protein n=1 Tax=Fistulifera ... [more]
A0A1Z5KC34_FISSO3.550e-971.05DAO domain-containing protein n=1 Tax=Fistulifera ... [more]
A0A1Q6EDZ7_9BACT4.840e-954.72FAD-binding protein n=1 Tax=Bacteroidales bacteriu... [more]
R5AP72_9BACT6.620e-956.60Uncharacterized protein n=1 Tax=Prevotella sp. CAG... [more]
A0A7S2UEH4_9STRA6.710e-968.42Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A4S4GMK9_9BACT8.350e-954.72FAD-binding protein (Fragment) n=1 Tax=Muribaculac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18520contigH-paniculata_contig18520:173..334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue2.8e-10
Seed eggNOG ortholog2880.D7FIX4
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.5-formyltetrahydrofolate cyclo-ligase activity
EggNOG OGs2QSVD@2759,COG2509@1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929434.0596561-CDS-H-paniculata_contig18520:172..3341622929434.0596561-CDS-H-paniculata_contig18520:172..334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18520 173..334 -
1691480859.632055-CDS-H-paniculata_contig18520:172..3341691480859.632055-CDS-H-paniculata_contig18520:172..334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18520 173..334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18520.4566.1prot_H-paniculata_contig18520.4566.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18520 173..334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18520.4566.1

>prot_H-paniculata_contig18520.4566.1 ID=prot_H-paniculata_contig18520.4566.1|Name=mRNA_H-paniculata_contig18520.4566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
RVILAVGHSSRKVYERLLESGVRLEAKGIAVGFRIEHPQVCADSTVIEAE
QNAG
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mRNA from alignment at H-paniculata_contig18520:173..334-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18520.4566.1 ID=mRNA_H-paniculata_contig18520.4566.1|Name=mRNA_H-paniculata_contig18520.4566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at H-paniculata_contig18520:173..334- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGTTATCCTGGCGGTTGGGCACAGCTCCCGGAAAGTGTACGAAAGGCT
TCTGGAATCTGGAGTACGACTCGAGGCCAAAGGCATCGCCGTGGGATTCC
GGATAGAGCATCCCCAGGTGTGTGCTGACTCTACAGTAATTGAGGCTGAG
CAGAACGCTGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig18520:173..334-

>mRNA_H-paniculata_contig18520.4566.1 ID=mRNA_H-paniculata_contig18520.4566.1|Name=mRNA_H-paniculata_contig18520.4566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig18520:173..334- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGTTATCCTGGCGGTTGGGCACAGCTCCCGGAAAGTGTACGAAAGGCT
TCTGGAATCTGGAGTACGACTCGAGGCCAAAGGCATCGCCGTGGGATTCC
GGATAGAGCATCCCCAGGTGTGTGCTGACTCTACAGTAATTGAGGCTGAG
CAGAACGCTGGTAGGGTTATCCTGGCGGTTGGGCACAGCTCCCGGAAAGT
GTACGAAAGGCTTCTGGAATCTGGAGTACGACTCGAGGCCAAAGGCATCG
CCGTGGGATTCCGGATAGAGCATCCCCAGGTGTGTGCTGACTCTACAGTA
ATTGAGGCTGAGCAGAACGCTGGT
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