mRNA_H-paniculata_contig1852.4565.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1852.4565.1
Unique NamemRNA_H-paniculata_contig1852.4565.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1852.4565.1 vs. uniprot
Match: D7G276_ECTSI (Mitochondrial import inner membrane translocase subunit TIM23 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G276_ECTSI)

HSP 1 Score: 270 bits (690), Expect = 5.890e-86
Identity = 131/200 (65.50%), Postives = 159/200 (79.50%), Query Frame = 3 
Query:    9 ESAGQDDPYSDASAKYGPLKLPALQPINVEKLYGGGSQGRKEPEYLDYNIKGRSVLEAAPYNAGACYLMGIAGGGAWGIREGFAKAPNRRPRVLMNSVMNSAGKKGSMYGNTLAVLAAYFTCFDAAFDYVGVDQIGPLAQAGVSDYVNPVLSGASTGLLYKSMAGPRVAGIAAVAGVGAVGAGFVADSVASSIFGRGFIF 608
            ES G  DPYSDASAKYGPLKLP LQ +++ K+YGG +QG KEPEYLDYNIKGR   E  PYNAGA Y+ GI GGGA G+REGFAKAPNRR RVL+NS+MN AGKKGS YGNT AVLA Y+TC +   D+  VDQ+GP+ QAG+ + +NP+L+GASTGLLYKS AGPR+A +A+VAG+GAVG  +  D  ++S+ G+G IF
Sbjct:    8 ESGGVQDPYSDASAKYGPLKLPELQNVDLSKMYGGAAQG-KEPEYLDYNIKGRGFWERMPYNAGALYITGILGGGAAGVREGFAKAPNRRSRVLLNSIMNHAGKKGSFYGNTFAVLATYYTCAETLLDHFEVDQMGPVQQAGLGEIINPLLAGASTGLLYKSSAGPRLALMASVAGLGAVGVAYAVDKTSASVLGQGIIF 206
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BLAST of mRNA_H-paniculata_contig1852.4565.1 vs. uniprot
Match: A0A835Z638_9STRA (Mitochondrial import inner membrane translocase subunit TIM23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z638_9STRA)

HSP 1 Score: 156 bits (395), Expect = 6.550e-42
Identity = 82/198 (41.41%), Postives = 123/198 (62.12%), Query Frame = 3 
Query:   15 AGQDDPYSDASAKYGPLKLPALQPINVEK-----LYGGGSQGRKEPEYLDYNIKGRSVLEAAPYNAGACYLMGIAGGGAWGIREGFAKAPNRRPRVLMNSVMNSAGKKGSMYGNTLAVLAAYFTCFDAAFDYVGVDQIGPLAQAGVSDYVNPVLSGASTGLLYKSMAGPRVAGIAAVAGVGAVGAGFVADSVASSIFG 593
            +G +DPY+D  AK+G L+LP L   +++      +YG    G  EP+YLDYNIKGR   E   YN G CYL GI GGG +G+ EG   AP+ R R+ +N+++N+AGK+GS  GNTLAVLA ++T F+  FD + VD     A+ G +++++PVL+G++   L+ +    R   +A VAG   +GA ++  +   S+ G
Sbjct:   10 SGDNDPYTDPGAKFGRLELPKLNTSSIDLGSLAGMYGVQGGGAYEPDYLDYNIKGRDTFEKTTYNTGMCYLAGIIGGGGYGVLEGARTAPSSRARIRVNAILNAAGKRGSRAGNTLAVLAMFYTGFEFMFDSLEVD-----AKVGDAEWLHPVLAGSAAMTLFYTGKNVRTMALAGVAGGAGMGALYLGTTALGSLIG 202
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BLAST of mRNA_H-paniculata_contig1852.4565.1 vs. uniprot
Match: A0A7S1XNQ0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNQ0_9STRA)

HSP 1 Score: 150 bits (379), Expect = 9.560e-40
Identity = 85/176 (48.30%), Postives = 108/176 (61.36%), Query Frame = 3 
Query:   69 LPALQPINVEKLYGGGSQG-RKEPEYLDYNIKGRSVLEAAPYNAGACYLMGIAGGGAWGIREGFAKAPNRRPRVLMNSVMNSAGKKGSMYGNTLAVLAAYFTCFDAAFDYVGVDQIGPLAQAGVSDYVNPVLSGASTGLLYKSMAGPRVAGIAAVAGVGAVGAGFVADSVASSIFG 593
            +P +     + + GG S G R EPEYLDY IK R  LE      G  YL G+ GGG  G+ EG   +P+ R R+L NS+MN+AGK+GS  GN    +A +++ F A +D   VD      Q GV D+VNPVLSGASTGLLYKS AGPR A +AAV G G +GA F  + V S++ G
Sbjct:   16 IPGIDFTLKQPIGGGLSTGSRYEPEYLDYTIKSRGPLENVFSYCGTAYLAGVIGGGGVGLMEGVRSSPSSRFRILFNSIMNNAGKRGSRAGNAFGCVALFYSGFLALYDGYNVDM-----QLGVGDWVNPVLSGASTGLLYKSTAGPRAAILAAVLGGGVIGASFGVEEVVSNMLG 186
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BLAST of mRNA_H-paniculata_contig1852.4565.1 vs. uniprot
Match: A0A7S3QG58_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QG58_9STRA)

HSP 1 Score: 124 bits (312), Expect = 5.260e-30
Identity = 77/202 (38.12%), Postives = 109/202 (53.96%), Query Frame = 3 
Query:    9 ESAGQDDPYSDASAKYGPLKLPALQPINVEKLYGGGSQGRKEPEYLDYNIKGRSVLEAAPYNAGACYLMGIAGGGAWGIREGFAKAPNRRPRVLMNSVMNSAGKKGSMYGNTLAVLAAYFTCFDAAFDYVGVDQI-GPLAQAGVSDYVNPVLSGASTGLLYKSMAGPRVAGIAAVAGVGAVGAGFVADSVASSIFG-RGFIF 608
            E A +  P  DAS+    +KL  + P         G  G   P+YL+Y+ KGR +      N G  YL+GI GGG +G+REG    P+ R RV +NSV+N   + GS  GN + VL+  ++ F+ A D+  +DQ  GP+   G      P L+  +TG  YK  AGPRVAG+A   G+G VG  + A SV    +G +G++F
Sbjct:   11 EGASRPIPSFDASS----IKLTTIAPAL-------GVAGDNTPDYLEYDTKGRGITTTMFANTGLAYLLGIVGGGFYGLREGLQNTPSNRFRVKLNSVLNHCSRHGSRVGNMMGVLSIGYSLFEGAADHFEIDQYTGPVQPVG------PALAAFATGATYKIQAGPRVAGLAGAIGLGCVGVTYTAYSVLGIPYGQKGWLF 195
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BLAST of mRNA_H-paniculata_contig1852.4565.1 vs. uniprot
Match: A0A6U3NTN9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NTN9_9STRA)

HSP 1 Score: 119 bits (298), Expect = 5.590e-28
Identity = 68/162 (41.98%), Postives = 99/162 (61.11%), Query Frame = 3 
Query:  129 KEPEYLDYNIKGRSVLEAAPYNAGACYLMGIAGGGAWGIREGFAKAPNRRPRVLMNSVMNSAGKKGSMYGNTLAVLAAYFTCFDAAFDYVGVDQI-GPLAQAGVSDYVNPVLSGASTGLLYKSMAGPRVAGIAAVAGVGAVGAGFVADSVASSIFG-RGFIF 608
            ++P+YL+Y+ KGR V+     N G  YL+GI  GG +G+REG A  P+ R +V +NSV+N  GK GS  GNTL VL+  ++ ++ A D + V+Q  GP+          P L+   TG+ Y S +GPRVAG+A   G+GAVG  + A +V    +G RG++F
Sbjct:   42 EQPDYLEYDQKGRGVVVTMFANTGMSYLLGIGFGGVYGLREGLANTPSSRFKVKVNSVLNHCGKHGSRLGNTLGVLSIMYSLYEWAGDQLEVEQYTGPIQP------FTPALATFMTGVTYYSRSGPRVAGLAGTIGLGAVGVTYAAYTVLGIPYGNRGYLF 197
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BLAST of mRNA_H-paniculata_contig1852.4565.1 vs. uniprot
Match: A0A4D9D4E0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4E0_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.300e-26
Identity = 70/155 (45.16%), Postives = 93/155 (60.00%), Query Frame = 3 
Query:   93 VEKLYGGGSQGRKEPEYLDYNIKGRSVLEAAPYNAGACYLMGIAGGGAWGIREGFAKAPNRRPRVLMNSVMNSAGKKGSMYGNTLAVLAAYFTCFDAAFDYVGVDQIGPLAQAGVSDYVNPVLSGASTGLLYKSMAGPRVAGIAAVAGVGAVGAG 557
            V  LYG  S+  +EP+YLDY+IKGR  +E     +G+ YL GI  GG  G R G+  AP+ R  + +NSVMN AGK GS +GN   V A  ++  ++  D+   D++      G    VNPVLSGA +GLLYKS A PR A +A+V  +G  GAG
Sbjct:   33 VAPLYGVASE--EEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRTGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKV-----LGGHQAVNPVLSGAISGLLYKSTAAPRTAALASV--LGGFGAG 178
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BLAST of mRNA_H-paniculata_contig1852.4565.1 vs. uniprot
Match: A0A7S0F4Q4_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F4Q4_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.380e-26
Identity = 64/167 (38.32%), Postives = 93/167 (55.69%), Query Frame = 3 
Query:  111 GGSQGRKEPEYLDYNIKGRSVLEAAPYNAGACYLMGIAGGGAWGIREGFAKAPNRRPRVLMNSVMNSAGKKGSMYGNTLAVLAAYFTCFDAAFDYVGVDQIGPLAQAGVSDYVNPVLSGASTGLLYKSMAGPRVAGIAAVAGVGAVGAGFVADSVASSIFGR-GFIF 608
            G     K+P+YLDY+ KGR ++     NAG  YLMGI+GGG +G R+G    P+ + RV +NSV+N     GS  GNTL V A  ++ ++   D + +D+     + G+ D ++P      TG  Y + AG RVAG+A   G GAVGA +   +     +G  GF+F
Sbjct:   31 GVQSSAKQPDYLDYDQKGRGLVVTMFANAGVAYLMGISGGGVYGFRQGLVSTPSTKLRVRLNSVLNGMSNFGSKAGNTLGVFAVMYSVYETIGDQLELDR-----RTGI-DAISPAFGAMMTGATYYAPAGIRVAGLAGTIGFGAVGATYAGYTAVGKPYGSLGFLF 191
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BLAST of mRNA_H-paniculata_contig1852.4565.1 vs. uniprot
Match: W7TXH2_9STRA (Mitochondrial import inner membrane translocase subunit tim23 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXH2_9STRA)

HSP 1 Score: 115 bits (289), Expect = 4.780e-26
Identity = 70/155 (45.16%), Postives = 93/155 (60.00%), Query Frame = 3 
Query:   93 VEKLYGGGSQGRKEPEYLDYNIKGRSVLEAAPYNAGACYLMGIAGGGAWGIREGFAKAPNRRPRVLMNSVMNSAGKKGSMYGNTLAVLAAYFTCFDAAFDYVGVDQIGPLAQAGVSDYVNPVLSGASTGLLYKSMAGPRVAGIAAVAGVGAVGAG 557
            V  LYG  S+  +EP+YLDY+IKGR  +E     +G+ YL GI  GG  G R G+  AP+ R  + +NSVMN AGK GS +GN   V A  ++  ++  D+   D++      G    VNPVLSGA +GLLYKS A PR A +A+V  +G  GAG
Sbjct:   99 VAPLYGVASE--EEPDYLDYDIKGRGTVERMFLYSGSSYLTGILTGGILGGRRGWKTAPSPRFWLRLNSVMNGAGKLGSKWGNNAGVFALMYSLSESLLDHFETDKV-----LGGHQAVNPVLSGAISGLLYKSTAAPRTAALASV--LGGFGAG 244
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BLAST of mRNA_H-paniculata_contig1852.4565.1 vs. uniprot
Match: A0A7S0AZQ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AZQ3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 5.630e-26
Identity = 66/182 (36.26%), Postives = 98/182 (53.85%), Query Frame = 3 
Query:   15 AGQDDPYSDASAKYGPLKLPALQPINVEKLYGGGSQG--RKEPEYLDYNIKGRSVLEAAPYNAGACYLMGIAGGGAWGIREGFAKAPNRRPRVLMNSVMNSAGKKGSMYGNTLAVLAAYFTCFDAAFDYVGVDQIGPLAQAGVSDYVNPVLSGASTGLLYKSMAGPRVAGIAAVAGVGAVGA 554
            +G + PY D  A      LP+    +++      + G   ++P+YLDY+ KGR V+     N G  YL+GI  GG +G+REG    P+ R +V +NSV+N  G+ GS  GN L V +  ++ F+   D+  +DQ        V    +P  +   TG+ YK+ AGPRVA +A   G+GAVGA
Sbjct:   17 SGVERPYDDTDAG---SPLPSFDASSIKLTTVAPALGVPTQQPDYLDYDTKGRGVVVTMFANTGVSYLLGIVAGGVYGLREGLLHTPSSRFKVKLNSVLNHCGRHGSWAGNVLGVASIMYSLFEGLADHYDLDQYTRPVVGEVP--ASPAFAALMTGVTYKATAGPRVAALAGTIGLGAVGA 193
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BLAST of mRNA_H-paniculata_contig1852.4565.1 vs. uniprot
Match: A0A7R9W7X5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W7X5_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.580e-26
Identity = 66/160 (41.25%), Postives = 92/160 (57.50%), Query Frame = 3 
Query:  135 PEYLDYNIKGRSVLEAAPYNAGACYLMGIAGGGAWGIREGFAKAPNRRPRVLMNSVMNSAGKKGSMYGNTLAVLAAYFTCFDAAFDYVGVDQI-GPLAQAGVSDYVNPVLSGASTGLLYKSMAGPRVAGIAAVAGVGAVGAGFVADSVASSIFG-RGFIF 608
            P+YLDY+ KGR V+     NAG  YL+GI GGG +G+REG A  P+ R RV +NSV+N  G+ GS  GN L VL+  ++ ++   D   +++  GP+  A       P  +   TG  Y S AGPRVAG+A   G+GAVG  +         +G RG++F
Sbjct:   51 PDYLDYDQKGRGVMVTMFANAGMSYLLGIVGGGLYGLREGLAHTPSTRFRVRLNSVLNHCGRHGSRAGNVLGVLSVMYSLYEWQADMWELEEYTGPVQPAA------PAFAAMMTGATYYSRAGPRVAGLAGAIGLGAVGVTYGVYRALGIPYGHRGYLF 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1852.4565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G276_ECTSI5.890e-8665.50Mitochondrial import inner membrane translocase su... [more]
A0A835Z638_9STRA6.550e-4241.41Mitochondrial import inner membrane translocase su... [more]
A0A7S1XNQ0_9STRA9.560e-4048.30Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3QG58_9STRA5.260e-3038.12Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6U3NTN9_9STRA5.590e-2841.98Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A4D9D4E0_9STRA1.300e-2645.16Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S0F4Q4_9STRA3.380e-2638.32Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
W7TXH2_9STRA4.780e-2645.16Mitochondrial import inner membrane translocase su... [more]
A0A7S0AZQ3_9STRA5.630e-2636.26Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7R9W7X5_9STRA6.580e-2641.25Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1852contigH-paniculata_contig1852:15311..21583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.4
Seed ortholog evalue2.9e-40
Seed eggNOG ortholog2880.D7G276
Preferred nameTIMM23
KEGG rclassRC00034
KEGG koko:K00430,ko:K17794
KEGG TC3.A.8.1
KEGG ReactionR00602,R02596,R03919,R04007,R07443
KEGG Pathwayko00940,ko01100,ko01110,ko04212,map00940,map01100,map01110,map04212
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009719,GO:0009725,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010604,GO:0010628,GO:0010954,GO:0014070,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019222,GO:0019866,GO:0019899,GO:0022804,GO:0022857,GO:0022884,GO:0030150,GO:0030162,GO:0030943,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031323,GO:0031325,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032268,GO:0032270,GO:0032592,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042221,GO:0042277,GO:0042719,GO:0042886,GO:0042887,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0045862,GO:0046907,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0055085,GO:0060255,GO:0061024,GO:0065002,GO:0065007,GO:0070013,GO:0070585,GO:0070613,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0072657,GO:0080090,GO:0090150,GO:0090151,GO:0097066,GO:0098573,GO:0098796,GO:0098798,GO:0098800,GO:1901698,GO:1901700,GO:1903317,GO:1903319,GO:1904680,GO:1905242,GO:1990351,GO:1990542
EggNOG free text desc.protein import into mitochondrial matrix
EggNOG OGsCOG5596@1,KOG3324@2759
Ec32 ortholog descriptionMitochondrial import inner membrane translocase subunit TIM23 homolog
Ec32 orthologEc-16_002190.1
EC1.11.1.7
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03029
Exons5
Model size1304
Cds size402
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929433.9076073-UTR-H-paniculata_contig1852:15310..154321622929433.9076073-UTR-H-paniculata_contig1852:15310..15432Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1852 15311..15432 +
1691480859.5393302-UTR-H-paniculata_contig1852:15310..154321691480859.5393302-UTR-H-paniculata_contig1852:15310..15432Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1852 15311..15432 +
1622929433.9248817-UTR-H-paniculata_contig1852:16528..166181622929433.9248817-UTR-H-paniculata_contig1852:16528..16618Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1852 16529..16618 +
1691480859.5554779-UTR-H-paniculata_contig1852:16528..166181691480859.5554779-UTR-H-paniculata_contig1852:16528..16618Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1852 16529..16618 +
1622929434.0109305-UTR-H-paniculata_contig1852:20893..215831622929434.0109305-UTR-H-paniculata_contig1852:20893..21583Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1852 20894..21583 +
1691480859.6185105-UTR-H-paniculata_contig1852:20893..215831691480859.6185105-UTR-H-paniculata_contig1852:20893..21583Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1852 20894..21583 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929433.9460227-CDS-H-paniculata_contig1852:16618..166221622929433.9460227-CDS-H-paniculata_contig1852:16618..16622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1852 16619..16622 +
1691480859.5681245-CDS-H-paniculata_contig1852:16618..166221691480859.5681245-CDS-H-paniculata_contig1852:16618..16622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1852 16619..16622 +
1622929433.9652016-CDS-H-paniculata_contig1852:17328..174691622929433.9652016-CDS-H-paniculata_contig1852:17328..17469Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1852 17329..17469 +
1691480859.5857997-CDS-H-paniculata_contig1852:17328..174691691480859.5857997-CDS-H-paniculata_contig1852:17328..17469Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1852 17329..17469 +
1622929433.9799476-CDS-H-paniculata_contig1852:19682..198231622929433.9799476-CDS-H-paniculata_contig1852:19682..19823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1852 19683..19823 +
1691480859.5980253-CDS-H-paniculata_contig1852:19682..198231691480859.5980253-CDS-H-paniculata_contig1852:19682..19823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1852 19683..19823 +
1622929433.997353-CDS-H-paniculata_contig1852:20777..208931622929433.997353-CDS-H-paniculata_contig1852:20777..20893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1852 20778..20893 +
1691480859.6087718-CDS-H-paniculata_contig1852:20777..208931691480859.6087718-CDS-H-paniculata_contig1852:20777..20893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1852 20778..20893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1852.4565.1prot_H-paniculata_contig1852.4565.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1852 16619..20893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1852.4565.1

>prot_H-paniculata_contig1852.4565.1 ID=prot_H-paniculata_contig1852.4565.1|Name=mRNA_H-paniculata_contig1852.4565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
MGIAGGGAWGIREGFAKAPNRRPRVLMNSVMNSAGKKGSMYGNTLAVLAA
YFTCFDAAFDYVGVDQIGPLAQAGVSDYVNPVLSGASTGLLYKSMAGPRV
AGIAAVAGVGAVGAGFVADSVASSIFGRGFIFQ*
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mRNA from alignment at H-paniculata_contig1852:15311..21583+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1852.4565.1 ID=mRNA_H-paniculata_contig1852.4565.1|Name=mRNA_H-paniculata_contig1852.4565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6273bp|location=Sequence derived from alignment at H-paniculata_contig1852:15311..21583+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATACAGAAAGCGCAGGACAGGACGACCCGTACAGTGACGCAAGTGCA
AAATACGGGCCTTTGAAGCTGCCCGCGCTGCAGCCGATCAACGTGGAGAA
GCTGTACGGAGGCGGCTCGCAAGTGAGTCATGTATGCAATGTCTGTTCTT
GTTGGTGTGATACTGTTTTTACCGGGGGAGGTCCTGTGGTACTTGTACTG
GACTTTCGTCACGGCCAAAATGTAGATTTGCTACCGACCGATACCGATCG
TGAATAATGACGCGACAGAATGCCTATCCAGCGCTAGACACCTGGTTAGT
GCATTTCAGATTCAAAAGGGGATCGTGATTCTTCCGTTTGGGGACTTTTT
TTTCACCGATCAAGTGTTGGGAGAACGTGCAAACACGGCGCTTTTCGTAT
CCGTCAAATGGCAAAGGAGTCCAGCTGAATATCAAGGGGTCGAAAGTTCC
TAAAGAGTTGAAGAGGTTCAACAAACGAAAACAAGCGCGGAAATGCCCAT
CTCATTGGTCTGCGAGTGTGTGCATGTATGAAACGCAACACTTTTCCAAC
GTTGTATACATCTGTAGATCAATCACAGGAACCACTAGTCTTGTTCCTTT
TCGTTGTATATATATTTTTCCTGCACCGGTTGTAGCAAAGACACGATCTA
GAATACTAGACAAAGGGTCGACTTGGGAAGAGGGCGCCCTTTTCAGCTCT
TCTCCGTGTGTGCGACTTGTGGGGCATGAAGTCTTTCTTTTTGCTTATTT
TTGCTTATTTTTGATGGTGAAGCAACTTCGCTTTGCCACCATTTTGACAT
CTATGTAGCGGACAATAGTTCATATCACGCATAGTATTATCGTTCGACGA
GCAGTATTGTTGCTATTCATGAAAACCAAAGAATAACGACGCAATTCGGA
GCAGTCGTAAATACTTACTGTAGATAATAAGCCTCGGTGGAGTACGTGTA
GAGTAGACTTGCTTAAGCTGAACTTCTGAGGCAAACAGTTTTTTCGTTTT
TCGTCGTAAACGCTTCAAGTAGCATATTCGCCCTCGCCCGCGGGGAGGGG
CAGGGGGGGGGCGTTCAATCCCGCGCGCATACAGGATCCATCCCCTTTTG
ACATCGATGTGCCACACTTCCCCAGCGCTTATGTGGTATATCGTTCCTTT
TTCCCCCTCCCGGCTAACGCTGCTCCTGACGTGTCACAACGCTCCACTTT
GCTCTTGATACCCCTCAGGGCCGAAAAGAACCTGAGTACCTGGACTACAA
TATCAAAGGGCGAAGTGTGCTTGAAGCGGCACCCTATAACGCGGGGGCGT
GCTATCTGATGGGTGAGTGGGTGATGTGTGTGTGTGTGTTGTGTCGCATC
TATGTATCTACGTATAATGGGTATCTACACTCTCGAGCAGTGCTACACAA
GTCTAGTTCATTCTGTCTGTGTTCACAAGTATTTTTTAGCAATGGAGCGA
GAGGCGGTCAAGGAGAAACTATGCTAGTGATCAAGGGTGGGGGTATCAAG
TTTGACTCAGCAAGACACAGAAACGCCATCACGGACAGTTTTGACGTATT
CTCTCGGTAGGCGTCCACCATGTACATGCACTCCCATTTGAAGCGAGCGC
GCGCATAGAAGAGGGGGGGGGGGAGGTAATTCCGACCGATGTTACGTTAT
GCCGTTGACCTCAAATCTCTGTTGTGTACCCTCAGCTGAATTGGATCAAA
TAGGAGGGCGTTTGCTTGCGGGTGTATTGTGTGTATGCGGCCAGCCAAAA
GGATCCGCCTTGGTTGCCTATTCACCTCATGTATCATCAGGCGGCGTACC
GTTTTGATTAATTGTGCAGGAATTTTTGTATCAGGCGTATGCTAGGCCGT
ATTGACACCGAATCCAACTTTTTTTAATTTCCCGGTGACCACTACTCGCT
GTTGTGTACATGCAGCACATGATCGTTAACGATGACGTTGATTGTGTTCT
TTTCTCTGTCCATTGTCTTGTCTCTTTTCCTTTTCTTTTGTTCAAATATT
ATGTCGTGTTTTGGCCAGGTATCGCCGGCGGAGGTGCGTGGGGAATTCGA
GAAGGGTTCGCAAAGGCGCCTAACCGACGACCGCGGGTCCTGATGAATAG
TGTCATGAATTCTGCGGGCAAGAAGGGCTCCATGTACGGCAACACTCTTG
CTGTTCTCGGTGAGAGCAGCAGGGGCACGGGTAGTCGGGGCTGGGGTCGA
GGCCGGACGGGGAGTCGGGAGGGGGGGCAGGAAAATTTGACAATAATCGT
AAAACAAGATGGAGGTATGCTCAGCATTTTCAAGCTTCTGGAGTACTAGG
TTATTTTCCACAAACTGACACATCTAGGGGGGGGTAAAAGTAGATGGCAT
CCACAAGAGGGTGTCACTGTATCACTTGCTTTTTTACTGTGGACGTGGAC
ATGGCTATGAAATGACTTTCGCTTGAATGCATGACATGGATGAAGTATTC
CCGTTCACCAGCCACGGATCGCAGGCCTTATTTAAGAGTCAACTTACTTG
CCATAGTTGGTGGGCCTAGAACGCTCGATGCTCATATAAGAAATTGTTTC
GTATCGCTTATTGAGGCTATGCTTGTAGCTATTTTCAATTCTCAGGCATC
TACACTTGTCAGCAAAATTAGATCAAAATATTGATGGAAGGCAAAAGACA
AACATATTATATACACACTCACCTGGCTGTTGGAGACGTGGAAAAATTAA
AGGATTGCCAATGAGTGTGGAGAAAAAGTATGCATGCCCTCGGACGTGAC
GGGATCTGAAACGAGCCGGAAACGTCACCATAAATGGCAAGGAGGCGTCA
ACGTAGGGAATTAAGTAAGAGACACGTGTGTGAAGTTTCGTCCAAGATAA
AATAAAAGAAAAAAAGGACGTGACTATGGCCACAAACATGAACGCGACAC
GCTACCGCGGTTCTAATGCGTTATTATTATGCTGCCTTCAGGGTAAATCG
TGATATAGCGGAAAAAACACTGTTTCCGGATTAGTGCCGGCGTCTTTCTG
AGTTCGGGAACGAAAATAGGCACTCAGGAGCTTAACTAAATTCCCTTGTG
TACACGCCAAAGTGTGAAAACGGTGGAATGAAGTCGTGACGTCATTTTGT
GTTTTGCGGAATTTTGTGAGGTATGGATTTTTTTTTACGATTGCTTATCG
TATACGTTTGTGGACCCGTTGCTTTGGGCACTGCTAAGCAGCCCACAAGA
TGAGTTACTGTAAATCAGGTCAAAAGTGAGGTCCTGTGCCCTGTGCTATG
CATGAGGGTCTCTCCGAGACTTTGTGCGGTTAAATTGGTGCAGTGTCCGT
GGAGAAACCATGGTAACACAGTCTTCGTGGTTTTATGCATGAACCAGCTC
GTACATGATACTGTCTCTTTTATACATTATTTGATGCCTTTAGAAAATTC
CAAGAGGGTGCGGAAACGTTGAGCACAGTCAGTTCAGCGATACAGGATAG
TAGTATGTGAATCCGGTGAGCACACACAGCACAGTCGTTTACATGGTGGG
TGTGCATATAGCTAGCTAGTACATTGCTGTTGTGTTCGCAACGTGTTCCA
AATGCTTTATCAGCCTCCTGTTGTTGCGGTTTGCCACTCTTTGATACGTT
TTTTGTCATCACTCGTGTGCCGGTATACAATCAGCCCCGCCCGCTTGGAA
CAAGAACCTGCTGTCACTCTTGCGTCAGCATTCACATCAACCACGACATA
TGTTTAACGGGTGGGAATCGTCTTCAAGGGTCAAAATGTCAGGATTGACG
CAGGACAGACCCACGACCGTAAATTGATCCTAGTTTTTGATGGCTTTCGG
GTTTCCTTTCAGTACTGCGCGTACTTGCCGGTTTGCCGGGACCTCTGATG
CCTCCCACTTCACTTACTTCTCTTCGAGGGCGGATGCCTTCGTGGCGTTA
ATGGCTTTCGTTTGGGTCACTGATAAAATTACGACGCTATGCTGCAAAAG
AGGTCCAGAGGGGATGAGTCAATTTGACCTCGTTTGCGCGAGAGGGTCGT
GGAGGGGGGCTTGGAGCGACCGGACCATGCGCTGCTGCAAGATGTTGAAT
ATGCCTCCGCTCGCGAGTCCGGGGCGCGGGGTCATTTAAAAACGAAATTT
ACAAATCCTTTTATATATTATCAGTCTAAATTCTGGCGAGCCGTATGAAG
GAGAAAAACTTTGATTTCACGCATATGGTTTGTAGGCCAGTCATTTGTTC
GAATGCATCGGCATGTATGCCCCCCCCCTCCCCCCCCCTCCCCCTCCCCT
CCCCCCTCCCGTTTTTTTCATTTTCTTTAATCGTTGTGTTCTCCCGCGCT
GTCTTTTTTTTTCTCTCATTATGTTGTCGCCGTTTGATGGGTGCTGCTCT
GCTTTTATTGCTCTTGCTGCAGCTGCGTACTTCACGTGTTTTGATGCGGC
GTTTGATTATGTCGGGGTAGACCAGATTGGACCGCTTGCGCAGGCAGGAG
TTAGCGACTACGTCAATCCAGTGCTATCGGGCGCTTCGACTGGGCTGCTC
TACAAGAGCATGGGTACGTCTCCAATGAAATTATTTAATTCGATATATAT
ATATATATAATATATATATATATATATATATATATAGAGAGAGAGAGAGA
GAGAGAGAGAGACGTAATACATCACGGATTAGGGTATTTTGTTTACATCA
ACCATTCGGTTAATGATGCATGCTGAACAAATCAGGATTGCGATATTTCA
TCTTAGAGCACCCTCTACTACTGTATAGCTGGTTACTTTTAGCTGGCAGA
AAATGAGAGGTGTAGCGATACGATGCCCGAACAAAACGAGCCTACATATT
TCACCACCGCAAATCACCATGTGATTCTTGCCTAGAATAGTCTTTGTGGT
TGTCAACACTTGACAGTGTATTTGATGGCACCAGGGGGGATTCCAGGGTT
CACAGAGGATGCAAGAAACACGTTTGGTTGAGAGTACTGACTAAGCCCCA
TAACTATGGCACTGTGATGTTTCTATGATAGTTTTGGCGTCATTACTCAC
CAGTATGGGAAATCGATTCAAAGTAAAAGCGGGCCCGCTCAGCTCATCCT
TCGATTAAAATCCCATTTTTGCACATGTCAGAAACGGCAATGTGTGCTTT
GCGGCACATACTATGTAGAGCGTCGCACACTGTAAAAAGTAGAATTTTTC
GTTTTGTTACATGTCACCCGTTACAGTCTCACGCCTTTATCCTTATCCCC
CTCCTCCCCCGGTCTGCACACATCTGCTTCTTGCCCCCGTCCGTAAAAAA
CCGTCATGTGGTTATTTTCCATTTGTTGCTGGAAATTTCTTCCTGGCCAC
CACCAACGAATACGGACGCTGCTGGATTTTTTTTACTGTCGTACGTGTTT
TTGTTCGGGTCGTTTTTTTGTTTTTTTTTCATGTTTTTTTTTATTTACAC
CATTATTCGAAAATACGACTTTGTTTTCAAATTACCGGGTTTTTTTTTTA
CGATGGCAATGCTGCAGCGGGGCCGCGAGTTGCCGGCATCGCAGCTGTTG
CGGGGGTAGGAGCGGTAGGGGCAGGGTTTGTAGCAGATTCAGTCGCGTCG
TCAATTTTTGGGAGGGGCTTTATTTTCCAGTAGCGGTATATTTGATATGC
CGGTATACACCTCTCTGAAGTAGGCAGTGAATAAAGCGTCAAGTATGTAT
TTATTGAGCCTTTTTGGCGTCCAAAGGGAGTTCTCGTTCGTTTGTGTTCC
ACGTCCATGTTAACCATGGGGGTTTGTTGTTTTTTCCCCTCCTGCTGCAG
ATTTCCATTATTTTGACTTTTCACAATCGACTAAGATCGATCGGGGTGTA
GAGTTGAAATTCATCTAATATATGTTAGTTTCTTTTTCTTTTCTCATCTT
TGGGTTGATATATATATATATTAGTTTTGCCTTTGAATTGGTATTGTTTT
TCTCGATGTTGAGCTGTATGGCAATACTATCCGGTGGGTTCCCAAATCTG
TCACACCCCCTTCTGTGTGACCCGCCCATAAGTATTTATACTTTCTTACA
GCCCTACGACGAGTAATATTATTTGGTCGTGTCAACCATCTTAGGGAAGG
GTGACCCACCCCAGAACACACAAATACCAAATAAACCCCAAGCTATAGAC
TTATTTGAAATAAAAAAAATTTAGCTATACCTCTTCCCGATGTGCCCTTC
AAAGGCAATTGGCACGTGGGTATGAGGTGTCTAAGGCAAGAGACGCGTAT
GTCTAGGCGCACAACCGCTTCCTGTGTGCCAGTAAGTCGACTCTCTGACC
TCTTCACGTTTGCTTGTACAGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig1852:15311..21583+

>mRNA_H-paniculata_contig1852.4565.1 ID=mRNA_H-paniculata_contig1852.4565.1|Name=mRNA_H-paniculata_contig1852.4565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig1852:15311..21583+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGGGTATCGCCGGCGGAGGTGCGTGGGGAATTCGAGAAGGGTTCG
CAAAGGCGCCTAACCGACGACCGCGGGTCCTGATGAATAGTGTCATGAAT
TCTGCGGGCAAGAAGGGCTCCATGTACGGCAACACTCTTGCTGTTCTCGG
TATCGCCGGCGGAGGTGCGTGGGGAATTCGAGAAGGGTTCGCAAAGGCGC
CTAACCGACGACCGCGGGTCCTGATGAATAGTGTCATGAATTCTGCGGGC
AAGAAGGGCTCCATGTACGGCAACACTCTTGCTGTTCTCGCTGCGTACTT
CACGTGTTTTGATGCGGCGTTTGATTATGTCGGGGTAGACCAGATTGGAC
CGCTTGCGCAGGCAGGAGTTAGCGACTACGTCAATCCAGTGCTATCGGGC
GCTTCGACTGGGCTGCTCTACAAGAGCATGGCTGCGTACTTCACGTGTTT
TGATGCGGCGTTTGATTATGTCGGGGTAGACCAGATTGGACCGCTTGCGC
AGGCAGGAGTTAGCGACTACGTCAATCCAGTGCTATCGGGCGCTTCGACT
GGGCTGCTCTACAAGAGCATGGCGGGGCCGCGAGTTGCCGGCATCGCAGC
TGTTGCGGGGGTAGGAGCGGTAGGGGCAGGGTTTGTAGCAGATTCAGTCG
CGTCGTCAATTTTTGGGAGGGGCTTTATTTTCCAGTAGCGGGGCCGCGAG
TTGCCGGCATCGCAGCTGTTGCGGGGGTAGGAGCGGTAGGGGCAGGGTTT
GTAGCAGATTCAGTCGCGTCGTCAATTTTTGGGAGGGGCTTTATTTTCCA
GTAG
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