mRNA_H-paniculata_contig18512.4562.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18512.4562.1
Unique NamemRNA_H-paniculata_contig18512.4562.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18512.4562.1 vs. uniprot
Match: D8LC46_ECTSI (Tyrosinase_Cu-bd domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LC46_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 5.900e-38
Identity = 56/87 (64.37%), Postives = 73/87 (83.91%), Query Frame = 1
Query:    1 EIPQLLLDNPGQLQADVYSKMRSPWNVNHRPYLTRGMGRMCGVRIEEVHPWPTCEDHHDLSTKYSTFYSWVWTSMYKPHGGVHAWIG 261
            EIP++ +++PG ++ DVYSK+R+PWNVN RPYLTRGMG+MC  +++E +PWPTCE H+DL+T YS FYSWVW S+Y PHG VH WIG
Sbjct:  417 EIPKMKVNDPGAVEPDVYSKLRAPWNVNDRPYLTRGMGKMCDAKVDEWYPWPTCETHYDLATGYSDFYSWVWYSLYDPHGPVHIWIG 503          
BLAST of mRNA_H-paniculata_contig18512.4562.1 vs. uniprot
Match: D8LC42_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC42_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 4.160e-35
Identity = 53/87 (60.92%), Postives = 66/87 (75.86%), Query Frame = 1
Query:    1 EIPQLLLDNPGQLQADVYSKMRSPWNVNHRPYLTRGMGRMCGVRIEEVHPWPTCEDHHDLSTKYSTFYSWVWTSMYKPHGGVHAWIG 261
            EIP++  +NPG +  DVY K+R+PWNVN R YLTRGMG +CG  +E+  PWPTC  H+DL+T YS FYSWVW S+Y PHG VH W+G
Sbjct:  403 EIPRVFENNPGLIDTDVYGKLRAPWNVNDRQYLTRGMGELCGADMEKAFPWPTCTSHYDLATGYSDFYSWVWQSLYDPHGPVHIWVG 489          
BLAST of mRNA_H-paniculata_contig18512.4562.1 vs. uniprot
Match: A0A6H5J7R8_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R8_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.960e-34
Identity = 53/86 (61.63%), Postives = 66/86 (76.74%), Query Frame = 1
Query:    4 IPQLLLDNPGQLQADVYSKMRSPWNVNHRPYLTRGMGRMCGVRIEEVHPWPTCEDHHDLSTKYSTFYSWVWTSMYKPHGGVHAWIG 261
            IP++ ++NPG+L  DVY K+R+PWNVN R YLTRGMG MCG+     +PWPTCE H+DL+T Y  FYS+VW S+Y PHG VH WIG
Sbjct:  383 IPRMEVNNPGELTPDVYLKLRAPWNVNDRAYLTRGMGNMCGIPTSNTYPWPTCETHYDLATSYKDFYSYVWDSLYDPHGPVHIWIG 468          
BLAST of mRNA_H-paniculata_contig18512.4562.1 vs. uniprot
Match: A0A6H5J676_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J676_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.750e-33
Identity = 51/86 (59.30%), Postives = 67/86 (77.91%), Query Frame = 1
Query:    4 IPQLLLDNPGQLQADVYSKMRSPWNVNHRPYLTRGMGRMCGVRIEEVHPWPTCEDHHDLSTKYSTFYSWVWTSMYKPHGGVHAWIG 261
            IP++   NP +++ DVYSK+RSPWNVN R Y++RGMG+MC  R E  +PWPTCE H++L+T ++ FYSWVW S+Y PHG VH WIG
Sbjct:  364 IPKMREGNPSKIEPDVYSKLRSPWNVNDRRYISRGMGQMCHARAETFYPWPTCESHYNLATSFTDFYSWVWESLYDPHGPVHIWIG 449          
BLAST of mRNA_H-paniculata_contig18512.4562.1 vs. uniprot
Match: A0A6H5JRR4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRR4_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 6.550e-31
Identity = 51/88 (57.95%), Postives = 64/88 (72.73%), Query Frame = 1
Query:    1 EIPQLLLDNPGQLQADVYSKMRSPWNVNHRPYLTRGMGRMCGVR-IEEVHPWPTCEDHHDLSTKYSTFYSWVWTSMYKPHGGVHAWIG 261
            ++P +   NPG L  DVY  +RS WNVN  PYLTRGMG +C    + +++PWPTCE H+ ++T+YS FYSWVWTSMY PHG VH WIG
Sbjct:  377 KMPAMYPGNPGDLNPDVYGLLRSRWNVNSSPYLTRGMGTLCNTYDVTQIYPWPTCELHYWMATEYSDFYSWVWTSMYAPHGPVHTWIG 464          
BLAST of mRNA_H-paniculata_contig18512.4562.1 vs. uniprot
Match: A0A6H5K0B2_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0B2_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.960e-27
Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    4 IPQLLLDNPGQLQADVYSKMRSPWNVNHRPYLTRGMGRMCGVRIEEVHPWPTCEDHHDLSTKYSTFYSWVWTSMYKPHGGVHAWIG 261
            +P +  D    L ADVY +MRSPWNVN RPYLTRG+G MCG+   E + WP C  H+DL  K++++Y + W S Y PHG VH W+G
Sbjct:  383 VPIVDEDKRNYLGADVYGRMRSPWNVNSRPYLTRGLGEMCGLDSTEFYSWPGCSSHYDLQDKFNSYYGYTWWSQYGPHGPVHVWVG 468          
BLAST of mRNA_H-paniculata_contig18512.4562.1 vs. uniprot
Match: D7G3A2_ECTSI (Tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3A2_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 4.960e-27
Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    4 IPQLLLDNPGQLQADVYSKMRSPWNVNHRPYLTRGMGRMCGVRIEEVHPWPTCEDHHDLSTKYSTFYSWVWTSMYKPHGGVHAWIG 261
            +P +  D    L ADVY +MRSPWNVN RPYLTRG+G MCG+   E + WP C  H+DL  K++++Y + W S Y PHG VH W+G
Sbjct:  218 VPIVDEDERNFLGADVYGRMRSPWNVNSRPYLTRGLGEMCGLDSTEFYSWPGCSSHYDLQDKFNSYYGYTWWSQYGPHGPVHVWVG 303          
BLAST of mRNA_H-paniculata_contig18512.4562.1 vs. uniprot
Match: A0A7S2CXW9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CXW9_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.490e-14
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:   43 ADVYSKMRSPWNVNHRPYLTRGMGRMCGVRIEEVHPWPTCEDHHDL--STKYSTFYSWVWTSMYKPHGGVHAWIG 261
             + Y  MRSPWN    P++TR + + C V       WP C DH++L  ST YST+Y WVWT  Y PHG +H +IG
Sbjct:  274 TNAYGYMRSPWNTGKSPWVTR-VHKFCDVSFS-YESWPFCADHYNLTFSTDYSTWYDWVWTGGYVPHGPIHYYIG 346          
BLAST of mRNA_H-paniculata_contig18512.4562.1 vs. uniprot
Match: A0A7S2MT20_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MT20_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.050e-11
Identity = 34/82 (41.46%), Postives = 41/82 (50.00%), Query Frame = 1
Query:   52 YSKMRSPWNVNHRPYLTRGMGRMCG------------VRIEEVHPWPTCEDHHDLSTKYSTFYSWVWTSMYKPHGGVHAWIG 261
            Y  +RSPWNVN  PYLTR     CG            +       WP+CE H  L+    T+Y +VW S Y+PHG VH  IG
Sbjct:  385 YGYLRSPWNVNRSPYLTRNHD-FCGADFIWNHEGISAISSNSATSWPSCEVHWQLTYHVDTWYEYVWNSNYQPHGPVHFMIG 465          
BLAST of mRNA_H-paniculata_contig18512.4562.1 vs. uniprot
Match: F0YPJ3_AURAN (Tyrosinase_Cu-bd domain-containing protein (Fragment) n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YPJ3_AURAN)

HSP 1 Score: 55.1 bits (131), Expect = 8.230e-7
Identity = 26/73 (35.62%), Postives = 38/73 (52.05%), Query Frame = 1
Query:   43 ADVYSKMRSPWNVNHRPYLTRGMGRMCGVRIEEVHPWPTCEDHHDLSTKYSTFYSWVWTSMYKPHGGVHAWIG 261
             + +  MRSPWN+N  P ++R     CG+    +  WPTC DHH L+    +   ++  +   PHG VH  IG
Sbjct: 2104 VNAFGYMRSPWNLNRSPAVSRARS-FCGLE-RPLADWPTCADHHSLTFGSPSLAGYLRGAGGHPHGSVHMMIG 2174          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18512.4562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LC46_ECTSI5.900e-3864.37Tyrosinase_Cu-bd domain-containing protein n=3 Tax... [more]
D8LC42_ECTSI4.160e-3560.92TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]
A0A6H5J7R8_9PHAE1.960e-3461.63TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5J676_9PHAE1.750e-3359.30TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6H5JRR4_9PHAE6.550e-3157.95TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6H5K0B2_9PHAE2.960e-2752.33TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G3A2_ECTSI4.960e-2752.33Tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A7S2CXW9_9STRA1.490e-1446.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2MT20_9STRA1.050e-1141.46Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0YPJ3_AURAN8.230e-735.62Tyrosinase_Cu-bd domain-containing protein (Fragme... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18512contigH-paniculata_contig18512:1553..2738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue5.8e-10
Seed eggNOG ortholog44056.XP_009040493.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ERAD pathway
EggNOG OGsCOG0790@1,KOG1550@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size265
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929433.631981-CDS-H-paniculata_contig18512:1552..16441622929433.631981-CDS-H-paniculata_contig18512:1552..1644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18512 1553..1644 +
1691480859.3988152-CDS-H-paniculata_contig18512:1552..16441691480859.3988152-CDS-H-paniculata_contig18512:1552..1644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18512 1553..1644 +
1622929433.655405-CDS-H-paniculata_contig18512:2567..27361622929433.655405-CDS-H-paniculata_contig18512:2567..2736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18512 2568..2736 +
1691480859.4225216-CDS-H-paniculata_contig18512:2567..27361691480859.4225216-CDS-H-paniculata_contig18512:2567..2736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18512 2568..2736 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18512.4562.1prot_H-paniculata_contig18512.4562.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18512 1553..2736 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18512.4562.1

>prot_H-paniculata_contig18512.4562.1 ID=prot_H-paniculata_contig18512.4562.1|Name=mRNA_H-paniculata_contig18512.4562.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
EIPQLLLDNPGQLQADVYSKMRSPWNVNHRPYLTRGMGRMCGVRIEEVHP
WPTCEDHHDLSTKYSTFYSWVWTSMYKPHGGVHAWIG
back to top

mRNA from alignment at H-paniculata_contig18512:1553..2738+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18512.4562.1 ID=mRNA_H-paniculata_contig18512.4562.1|Name=mRNA_H-paniculata_contig18512.4562.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1186bp|location=Sequence derived from alignment at H-paniculata_contig18512:1553..2738+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGATCCCTCAACTTCTTCTGGACAATCCAGGCCAGCTGCAGGCAGATGT GTACAGCAAGATGCGCTCTCCGTGGAACGTCAACCACCGCCCGTGAGTCG AATGTTAACGGCTGCAGGAAGAGAGAGGAACTAGCCCGGAACCGGGGTGG GGGGTATTGGGTAGGGGTAACGAAGGATAGTGTACCAGTAGTACCGTATA ATGCCTCTTAGTCCATCGGGTCTGAAGAAAAACTCAAACCGACCGTGACA GATCACACTGTGCCATAACAATAGGGGGGAGGGCACAAACGTGGAAAAAG ACAATCGCAGCACGGGGTCACGATGGCGCACTGCGTGCGAGACTCTAAAA CCTCGTGCTGGGTCAGGATACGATGAGATGGAAATGAGTGTAGTGTGGAC AGATACGTCCTGAAGTATAGTTTAGAGGTTACCGATAGTTCAGATAGTAC AACACACTTTAATTTACCGCCCGGACGAGTCGTCCTTGCTCCTTTTCGAA TGATAACCCTTAGATCGAGATGCTCATGTCAGAGAACCAACCCCAAGCGG GTGTCGATGAAGACTTGTACCTATGTTCTCCCGCGCACCCCCATTTGTTA TCGCACCCCGGTCGTCGCACTGTGGGGGGGAGGAGTGCGAAACATCAACA AATTTGTCCGTGACAGACCGCACGGAGCGATGTCAAAGGTAGTTGTGATA TTAAAGGGAGGCATGATAACAAGGGTTTATACATTACGCGAAATTCGTGC ATCACTGGTCGACTCAATCCAGGACTTCGTACACCAGAAAACCGAAAAAA TACCCGCCGGCAGCGGTGGGAAAGAGGTACCAATAATGATGCGAACGTCC ATAAGAAAGTCCGGAATAGAGCACTCGCACACTACATGTGGCAGCGAAAA ATCATTATCGTATGTCTGATGATGTCACCCATTGACCATCCCGTGGCTCA ATGATATCTATCCCCCCCCCGTCGCACCTCTTTCCGCCGGCTCCCTCATG CGCACGATTTCATAGGTACCTTACCCGAGGCATGGGGAGAATGTGCGGCG TGAGAATAGAAGAGGTGCATCCATGGCCTACCTGTGAGGACCATCATGAC CTGTCAACCAAGTATTCCACCTTTTACAGCTGGGTGTGGACTAGCATGTA CAAACCTCATGGCGGAGTTCACGCATGGATTGGCGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig18512:1553..2738+

>mRNA_H-paniculata_contig18512.4562.1 ID=mRNA_H-paniculata_contig18512.4562.1|Name=mRNA_H-paniculata_contig18512.4562.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig18512:1553..2738+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGATCCCTCAACTTCTTCTGGACAATCCAGGCCAGCTGCAGGCAGATGT
GTACAGCAAGATGCGCTCTCCGTGGAACGTCAACCACCGCCCGAGATCCC
TCAACTTCTTCTGGACAATCCAGGCCAGCTGCAGGCAGATGTGTACAGCA
AGATGCGCTCTCCGTGGAACGTCAACCACCGCCCGTACCTTACCCGAGGC
ATGGGGAGAATGTGCGGCGTGAGAATAGAAGAGGTGCATCCATGGCCTAC
CTGTGAGGACCATCATGACCTGTCAACCAAGTATTCCACCTTTTACAGCT
GGGTGTGGACTAGCATGTACAAACCTCATGGCGGAGTTCACGCATGGATT
GGCGTACCTTACCCGAGGCATGGGGAGAATGTGCGGCGTGAGAATAGAAG
AGGTGCATCCATGGCCTACCTGTGAGGACCATCATGACCTGTCAACCAAG
TATTCCACCTTTTACAGCTGGGTGTGGACTAGCATGTACAAACCTCATGG
CGGAGTTCACGCATGGATTGGC
back to top