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Homology
BLAST of mRNA_H-paniculata_contig1849.4554.1 vs. uniprot
Match: D8LS14_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS14_ECTSI) HSP 1 Score: 168 bits (425), Expect = 4.630e-46 Identity = 84/137 (61.31%), Postives = 99/137 (72.26%), Query Frame = 3
Query: 165 PVWMPALREERSSSASGISIAAVAGDDDREAEELWTDGKG-KAWVDDGRDSLPFEVYDVVPPKRKIGTAKLPPMTSTGDTMWHGSKHYRVLRVSSHYKYEGGRFVMRKKVIDAKELARVAREQVVARLVYGDDVKPP 572
P W ++R+ SS ++A +GDD G G K WVDDGRDSLPF VYD PP RK+G A LPP+T TGDT+WHGSKHY+VLRVSSHYKYEGGRFV+R+K I AKEL RVA+E+VV+RLVYGD K P
Sbjct: 35 PAWASSVRQG-DSSGDRAWMSASSGDDSSSGSGSGLSGSGGKEWVDDGRDSLPFVVYDAAPPPRKVGVANLPPLTGTGDTLWHGSKHYKVLRVSSHYKYEGGRFVVRRKSIQAKELKRVAKERVVSRLVYGDSGKAP 170
BLAST of mRNA_H-paniculata_contig1849.4554.1 vs. uniprot
Match: A0A7R9UDE4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDE4_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 2.140e-9 Identity = 45/138 (32.61%), Postives = 71/138 (51.45%), Query Frame = 3
Query: 168 VWMPALREERSSSASGISIAAVAGDD-DREAEELWTDG------KGKAW-----VDDGRDSLPFEVYDVVPPKRKIGTAKLPPMTSTGDTMWHGSKHYRVLRVSSHYKYEGGRFVMRKKVIDAKELARVAREQVVARL 545
+ P +R R + + A+AG+ D E E+ +D KG+ W D RD LPF+V+D+ PP + +G+ +L P T+ GD + + + + V RV+ +YKY G M KK EL R +E+ + RL
Sbjct: 26 IVSPVVRVTR----PALGLRAMAGEGWDGENEDDLSDEMEVQKKKGRGWKAPKKAKDRRDQLPFDVFDITPPTKMLGSFRLHPHTNCGDLLTYNDESFLVRRVACNYKYSRGALRMFKKTAHVVELNRAFQERSLERL 159
BLAST of mRNA_H-paniculata_contig1849.4554.1 vs. uniprot
Match: R1DMF1_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DMF1_EMIHU) HSP 1 Score: 53.5 bits (127), Expect = 9.940e-5 Identity = 40/99 (40.40%), Postives = 53/99 (53.54%), Query Frame = 3
Query: 276 GKGKAWVDDGRDSLPFEVYDVVPPKRKIGTAKLPPMTSTGDTMWHGSKHYRVLRVSSHYKYEGGRFVMRKK---VIDAK----ELARVAREQVVARLVY 551
G K VDD RD LP+E+ DV PP+R++GT +L P GD + + V RVS Y Y GR+ M K V+ A E AR A + +ARL +
Sbjct: 63 GYVKRPVDD-RDRLPYELTDVTPPERRLGTYRLAPNLGCGDMVETSEDAFVVKRVSYRYAYRAGRYRMVGKGANVVKAGRFGIEKARRAPDSPLARLPH 160
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 171.8 |
| Seed ortholog evalue | 3.1e-40 |
| Seed eggNOG ortholog | 2880.D8LS14 |
| Hectar predicted targeting category | chloroplast |
| EggNOG OGs | 2E6BW@1,2SD28@2759 |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-08_001750.1 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 4 |
| Model size | 1544 |
| Cds size | 564 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1849.4554.1 >prot_H-paniculata_contig1849.4554.1 ID=prot_H-paniculata_contig1849.4554.1|Name=mRNA_H-paniculata_contig1849.4554.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp
MAPHPCLLLLLAFPPCLVGAWSAGTSATRSELLRNCQKRGKRHSNPVWMP ALREERSSSASGISIAAVAGDDDREAEELWTDGKGKAWVDDGRDSLPFEV YDVVPPKRKIGTAKLPPMTSTGDTMWHGSKHYRVLRVSSHYKYEGGRFVM RKKVIDAKELARVAREQVVARLVYGDDVKPPRENPPR* back to topmRNA from alignment at H-paniculata_contig1849:6438..12133+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1849.4554.1 ID=mRNA_H-paniculata_contig1849.4554.1|Name=mRNA_H-paniculata_contig1849.4554.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5696bp|location=Sequence derived from alignment at H-paniculata_contig1849:6438..12133+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CCGAAATACCAAAATATTTGTAGGGTGTCATGGCACCCCACCCCTGTCTT
TTGCTGCTGCTGGCTTTCCCCCCATGCTTGGTTGGTGCATGGAGTGCCGG
CACTTCCGCTACGCGCTCCGAATTACTCCGAAACTGTCAAAAGCGTGGCA
AACGACATAGCAACCCAGGTCAGTTTTTGATCCCTCTCTAAATCATGTGT
CTTCTGATGCAATATCGAGCATACAGCGGCGGTGCGGGCTATTCGTTGCG
GCGTGTGCCGGCCGCACCCTCACTGGAAATATGGGACCTCTAGGGAAGGG
AATTGTGAGCTTTTCACGAAGGAGGGCTTGCCGATCAGTCTGAGCTCGGC
GTCAGGTACCCTTTATATGCAGTGTGAACATACTCGCTGCGCAATGTCAT
AAAAGTTGGTGCCTGACTCTATCATCGTGAAGAAAAAGGCTATGTGAGGT
TATTCAAGTATTTACTCTTTAGTTTAGATTAACCAGCGTTCATCACCCGC
ATTTTTTAGCATTGGAAACAATAAATAGAAGGCGTGAGGTGCATTTATTT
CTCCTCTCTACAACGACACCAACAGCAACAGGGAGAAGCTTGTCGAACAG
GGCTGCGTGGAAATGATATTATCCAGATGATCATGATGTTCTCGATGTTC
TCGATAACTGCCTATTTAGCTCCATGGGCTCAGATTTTTTCTGACAGGTG
CCGTATCCGTTCTATTATGCCGAGACCGGAGAGGAGGCCCTAAGGGCAGA
CAGTACAGTAGAGTCTCTCCAAATGATAACATGAAGGGCAACGGGATAGC
TAGGAGTTATTGAAAATGCAGTCACATTTGGGGGAAGTACCTTTGGCTCA
ACACCTAGTCGTTGGCCCAGCACGCGCTTGCGTAAAAGCAACCAATAGCA
CAAGATTTTGCATGGTTGAGCGCGTCACTGTGGTGGAACGGTGAACGGTC
CGCTCCAGGAGCGGCGAAATCATATGTAACTGTACAGTACATGCATGCAT
AGTAGGGATTCACCATCATTGCACGGAGGCGGAACTTTAGCGGGTGAGAG
ACCTAACCCTACCAATATCTCTCTGCGTCTCACACCGAGGTGTCGAAGAG
GTGATACACGCACATATCGATATCCCACAGTGTTGGAAGTAGCAATTAGC
CCTATGTGTAAGAGCATTCTCGTCCCAATGGGACCCGTGTTTGCTGAGAA
CCATCCGACTTGGTATCTAATTCCAAAGATTAGCATATTGTTGGTCATCA
ATTAATAGACACAATAGCGTACATTTGTCGTCCCTCCCACGAAACAACAA
AAAAATACAATTAACTAATTGCCCTGGGTACGAGCTGTTTGTACGCCATA
AAATAAGATTGTCGACAATACATTGAAGCCCTGAGAGTAAAATGGCAGTC
GTGCTGGAGTAAACGTGCTTCTTATCCCACACAAGGCCAACGGATCGGGG
TCCCCTGCTCAATTGATACTCGCAGTTGAATGGAGAGGTATTTCGGCGAC
ATCAGTAACTCGTAATGCCACCCTTTTCAAACATGCGGTTTTGGTACCAG
CGCTGTTCAATATCGATGGCTTCGTCCTATAGGGCTATAGTTCTAATTTT
TCGTAGCACCAATCCTATCTTCAAGGGATTGAGAGAGGGGTATTAGCGTA
CTCTGGCACACGCTGGAGTATGACCACCTGTAGAAAAACTGCAAAATAAT
AGCGCAGCATCGTATCCAGTTTTCCGCATCGTCCGACACTAACTTCTGGC
TGTTTACAGTGAATTCTGCTCTCGTTTCCATGTAACTTGGATTATTTAGC
TGTCTCCGAGTATAGATTGGTTGTCGATGCTTACTAGCTTCTGTGTGGAT
ATATATATATATATATGGAAGAACACCCCTTTTCTCTACTACCACTATGT
CTTGTTCGAATCCCAGTCTATAATAGGATGTGCCTTTTTGTGGATTTTGT
CCTAAATAGAAGGCCAGTCTGAAATCTAGGCCCATCGTACTGCCGTTGAC
CGAAACAATTTTGGTGCAAAGATACTCGTGTGTAGGTTGTTGCAGTTCCA
CCCGTCCCTTTCTATCCTTGATCCCCCCGCCTGCCCGCATGTTGTCTTCC
TTCGGTTCGCGCAGTATGGATGCCAGCACTGCGTGAGGAACGCAGCAGCA
GCGCAAGTGGTATCTCCATTGCAGCTGTTGCTGGCGATGACGACAGAGAG
GCGGAAGAGCTATGGACCGACGGCAAAGGAAAGGCGTGGGTAGACGACGG
TCGAGACAGTTTGCCATTCGAGGTGGGCGGGGTTCGATTGGCCCGAAACG
CTTAGCCCTGTTCTCTTGAACGAAGATGGTTACACGACGGGATATTTTAC
ACTGCACGATAGTTTTGGCTAAACCATTCGTCATATACTCTATCGTGAGC
TATGCATTGGTGTGTTGGAAGCGATCCATTCTCTTCTCGTCGGATTATAC
GCGTGTTAGGTGGTTTTCTGATCTGTATCCTTCGATTCAGCCAAAGTATA
CGTGTGATAACTCACTGTATTGGCGTAGCGGTTGCGAACGTTACTGGGAT
TTTCTCGGAATTGTATTGTTCTGATTCTCAGCTCTTGATACGAATCTGGT
TCGAATGTGGTTCTTGTAACGAATTGGTTAGAGGCATGGAATGAGCGAGC
CAATGTCTCCCCCCTTTCTGTCACTCTCTCGTCTATACCCTGACAAAAGC
TCCAAAACTCTTGTCTTTACACTCGCGTTGCAAGCCCATATCCGTCGAAG
TCACGAGGCATCGAACACGTCTCAGACAGTGCCGAATGGTGATGGTTATC
CTGTCATGCGAATTTTGCCATGATCAGAAGCGTTATACTTAACGACGCGC
GGACTGACTACCTAACCGAAAACGAATATAGTACCTAGGCAAGCACTCAA
TCATTTTTTTGCTTTGGTCTCCTTTGTTGTATTTATTCGGATGCCGTCGT
TTTTCAATTTCAGGTATACGATGTGGTGCCTCCGAAGAGAAAAATTGGCA
CTGCCAAGCTCCCGCCTATGACCAGTACCGGCGACACGATGTGGCATGGC
TCCAAGCATTACAGGGTTCTTCGCGTGAGCTCTCACTACAAGTGCGTTTG
ACGTTGAAATTTCCAGCTGCTACCCTCTTTTGATATACATATATTTAATG
GTCGTTCGGATGGGCAGTTGTGGCGATGTGGCAAAACACAGACGGCCTAG
TGGCAGTTAGGCGCAGTATTTTTGTGTACGTGTCGATCGCTGTCAGGGGG
TCAAGTCGTTCTAGCCAATGTTGGTTAAATAATTGAGCATCTCGTCGTGT
CTAACAGGTACCAGGTGTTCAGAACATGCACTCCCAAATATTCGTCAATC
GGCGACGCTGATTGCACAACTTCTCTTGAAACAGAATACAAGATATGATT
ATTAGTCTATCTAAAAATTATTTTATTATTATTGTATCCCGATAGTCACG
CTACTGGGGGAAACGTTGCATAATTATCCTTTGTGGTTCAACTCAAAAGA
TCCGCCTTTCTAATTTCTATCGTACAATTCAAGAATCACATCTCCTGTTA
GAGGAGATAATACCGAGCTATCGTCTGATACAGAGCGGGCAAGTTGAACG
TTTATCATCTCCTTGATGGGGATATGTCAACCATTATCTGTGGTTCTTAT
TGGCGAACAGGAACGTGACGATTACAATGTTCTTTCTGACGGAGGTATCC
ATGATTAATATCCCCCAATCCGAGCTGTGTAAGGATGTGTCCGTCGGTAA
ACGTACAAATGTTAAACATAGTGCAAACCAGTACTGCCGCTACGGAGGTA
TACACTGAAATACATTTTTTTCCATACAGATTTATGTAGTCAGCATACGG
TAGCATTCCATAATAGAATCAACACAAAGATACCTTCAAATTATGACCAA
AAAAATATACCCGCCGTAGTTCTTAATTGCAACATAGTCATATTTCTACT
TACTATCATCAGCTTACTTCGGTCCCGTACTGCTGCTCCGTAGTCAACTG
CCAAGTTAGTAGCATCGCTCATGTTAGAACGCGACGTCATTTTTCATAGT
GTGTGTAGTATATCATGGTAACTTCACGGTGACAATGCAACAGTTAAGAT
CAGCCCCCCTTCTGTCACTTTGAGGACCTTTGAATTTGCTTCCCCGTAGT
ACGCTTTCGCGCAAGCACCCAGGTTAGGGTTGAGGCTAGGGATGAACCTG
GATGAGTTCATTTGAGTTGGCTACAGACTTGCACGTCTTCCCGACCCCCC
CCCCCCCCCTTCCTGGCGAACCGCCACAGTGCCGTCGAAATCTCAGCAGC
CAAACGAAACACAATTTTAGTCTCCCAAAACTTCGGTGGCGCGAATTGCT
GTTTTTGTTCAGCTCTATTTGACCCGCGATCATGAGATGAAATATGTGTG
CGGTAAGCGATCTTTTCCCGCTCCGGTTGTAAGAGTGTGCATTTGGTTCG
GGTGCTCGAGACCTGGCGGCACTATGACTAGCAGGGCGAGTCGATGCTTT
GTGTTTCGTATCAAAACGTTAATCATGCCTTGAATATCAGCCACTTCTCT
CTCTCTCTCGCTCGCTCGCTCGCTTCCCGCCTCCCCCCCCCCCTCTATAC
CATCAGGTACGAAGGTGGGCGGTTCGTAATGCGCAAGAAGGTAATTGACG
CCAAGGAACTGGCTAGGGTAGCCCGCGAGCAAGTGGTTGCTCGATTAGTT
TACGGCGATGACGTCAAGCCGCCGCGCGAAAATCCACCACGTTGATCGTA
GACTTGGGGGTAGGAGGAAAGACTGAGCGGCAAAAGAGCATATTTTGTTG
TCTAGGGTAGGCTGCGGATCTGCTGTTTTGTGCACACGGTCGAGTGCAAT
CGAGACCGTAAGAAATCCCCCCTACGCTCGAGCGCGACTGTGAGACCCTG
ATTTAGCGAACGTTTATCTCAACACACAAGCGCCGCCTTCTAGCCCACGC
ATATTTAGATATTTCGCGGTTTAGCTTCGGAGCGCTGACTAGTATGCGAT
AAGTATTGGAAGGGTTTTGTTTTCTGTGACTACTGCCGCTGAGGTTTGTT
CCACTCATACTCAGATGGTTAATCCCCTTTCATATAACACTTTGTGGTGA
AGTTACTTGAGACGTGCGCTAGGTCGCAGTAGATGTATATTCTTTTTCAC
GAGAGGAGCCTTCCCTGGCCGCCGTAGGCGTTCGAATTTGTCATGTTTCA
AAGGTGTAAGCATGTGTATGTTCCTTGCCTGTCCATAGGATTTTAGTACG
GAGAACGACGGCGAGTCGAGGGTTGCTATGTGAAAGTAGAAGTATAAGAG
ATTTAATTATTTGCTGCCGGTACAGCGTTTAATACCGTGGGCGTAAGCGA
AAGACAAAATTCGACGCGAATCGCGAACATGACAAACAAAATATCTGTAC
ATAGTTTTCAGCCGGTGAGGTAAAGCTGCCTGGGGGTTCGCCGGTGAGTC
GCTGACTAGCATGGTACACATCCAGGCGTCAACATATGATCTGAGAAAAA
TTTTCAAGGTGACCACAGAATCGTCTAGCCGGAGTTTAAACAGGAAGAAT
AAGGATGCGATTGTAAATACAGTATACGTAGTTCAAGCGTTCCATCGACT
ATTCGGCTACAATATATTTGCCGCTATAGCTCTCTCGTTGGAACGGTGTA
AGGTTATATCGGCTTTTAATGATGCAAACGCATGTGGCGTCCCTGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig1849:6438..12133+ >mRNA_H-paniculata_contig1849.4554.1 ID=mRNA_H-paniculata_contig1849.4554.1|Name=mRNA_H-paniculata_contig1849.4554.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at H-paniculata_contig1849:6438..12133+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGCACCCCACCCCTGTCTTTTGCTGCTGCTGGCTTTCCCCCCATGCTT GGTTGGTGCATGGAGTGCCGGCACTTCCGCTACGCGCTCCGAATTACTCC GAAACTGTCAAAAGCGTGGCAAACGACATAGCAACCCAGATGGCACCCCA CCCCTGTCTTTTGCTGCTGCTGGCTTTCCCCCCATGCTTGGTTGGTGCAT GGAGTGCCGGCACTTCCGCTACGCGCTCCGAATTACTCCGAAACTGTCAA AAGCGTGGCAAACGACATAGCAACCCAGTATGGATGCCAGCACTGCGTGA GGAACGCAGCAGCAGCGCAAGTGGTATCTCCATTGCAGCTGTTGCTGGCG ATGACGACAGAGAGGCGGAAGAGCTATGGACCGACGGCAAAGGAAAGGCG TGGGTAGACGACGGTCGAGACAGTTTGCCATTCGAGTATGGATGCCAGCA CTGCGTGAGGAACGCAGCAGCAGCGCAAGTGGTATCTCCATTGCAGCTGT TGCTGGCGATGACGACAGAGAGGCGGAAGAGCTATGGACCGACGGCAAAG GAAAGGCGTGGGTAGACGACGGTCGAGACAGTTTGCCATTCGAGGTATAC GATGTGGTGCCTCCGAAGAGAAAAATTGGCACTGCCAAGCTCCCGCCTAT GACCAGTACCGGCGACACGATGTGGCATGGCTCCAAGCATTACAGGGTTC TTCGCGTGAGCTCTCACTACAAGTATACGATGTGGTGCCTCCGAAGAGAA AAATTGGCACTGCCAAGCTCCCGCCTATGACCAGTACCGGCGACACGATG TGGCATGGCTCCAAGCATTACAGGGTTCTTCGCGTGAGCTCTCACTACAA GTACGAAGGTGGGCGGTTCGTAATGCGCAAGAAGGTAATTGACGCCAAGG AACTGGCTAGGGTAGCCCGCGAGCAAGTGGTTGCTCGATTAGTTTACGGC GATGACGTCAAGCCGCCGCGCGAAAATCCACCACGTTGAGTACGAAGGTG GGCGGTTCGTAATGCGCAAGAAGGTAATTGACGCCAAGGAACTGGCTAGG GTAGCCCGCGAGCAAGTGGTTGCTCGATTAGTTTACGGCGATGACGTCAA GCCGCCGCGCGAAAATCCACCACGTTGA back to top
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