mRNA_H-paniculata_contig1849.4553.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1849.4553.1
Unique NamemRNA_H-paniculata_contig1849.4553.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1849.4553.1 vs. uniprot
Match: A0A6H5KPS4_9PHAE (Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPS4_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 2.250e-56
Identity = 86/118 (72.88%), Postives = 101/118 (85.59%), Query Frame = 1
Query:    7 AVLVVNVATYCGYTDSNYRELQALRAKYDEDKLAILAFPCNQFGAQEPGTHEEILSFVDKQYGVTFSIMNKIDVNGDGADPLFKWLKAASGDGRDISWNFTKFLVVGGKEVKRYSHQV 360
            AVL+VNVA++CGYTD +YRELQALRAK+DED+LAI+AFPCNQFGAQEPGT EEI S  D ++GVTF IM+KIDVNG  + P+F WLKAASG+  DI WNFTKFLV+ G  VKRYSH+V
Sbjct:   46 AVLIVNVASHCGYTDRDYRELQALRAKHDEDQLAIVAFPCNQFGAQEPGTWEEIASLADGKFGVTFPIMSKIDVNGLHSSPIFAWLKAASGNPHDIPWNFTKFLVLCGSTVKRYSHEV 163          
BLAST of mRNA_H-paniculata_contig1849.4553.1 vs. uniprot
Match: D8LS13_ECTSI (Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS13_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 9.840e-48
Identity = 75/119 (63.03%), Postives = 93/119 (78.15%), Query Frame = 1
Query:    4 QAVLVVNVATYCGYTDSNYRELQALRAKYDEDKLAILAFPCNQFGAQEPGTHEEILSFVDKQYGVTFSIMNKIDVNGDGADPLFKWLKAASGDGRDISWNFTKFLVVGGKEVKRYSHQV 360
            +AVL+VNVA+ C   + NY ELQALR  YDE++LAI+AFPCNQFG QEPG+ +EI S  ++++GVTF IM K++VNG  + PLF WLKAASG   +I WNFTKFLVVGG  V RYSH+V
Sbjct:   30 RAVLIVNVASQCSTAERNYLELQALREAYDEEELAIVAFPCNQFGGQEPGSWQEISSSAERRFGVTFPIMGKVEVNGLRSQPLFAWLKAASGVPGNIEWNFTKFLVVGGNHVTRYSHEV 148          
BLAST of mRNA_H-paniculata_contig1849.4553.1 vs. uniprot
Match: A0A835YHD0_9STRA (Glutathione peroxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHD0_9STRA)

HSP 1 Score: 150 bits (380), Expect = 9.480e-44
Identity = 70/117 (59.83%), Postives = 88/117 (75.21%), Query Frame = 1
Query:   13 LVVNVATYCGYTDSNYRELQALRAKYDEDKLAILAFPCNQFGAQEPGTHEEILSFVDKQYGVTFSIMNKIDVNGDGADPLFKWLKAASGDGRDISWNFTKFLVVGGKEVKRYSHQVT 363
            LVVNVA+ CGYTD+NYRELQ L  +Y+ED   +LAFPCNQFG+QEPG+  +I  F  ++YGVTF +M K++VNGDG DPLF +LK A+G G  + WNF+KFLVV G   K YSH  +
Sbjct:   55 LVVNVASQCGYTDTNYRELQQLYEEYEEDGFIVLAFPCNQFGSQEPGSPADIRDFTTEKYGVTFPLMAKVEVNGDGEDPLFTFLKEATGSG-PLKWNFSKFLVVNGVPRKHYSHSTS 170          
BLAST of mRNA_H-paniculata_contig1849.4553.1 vs. uniprot
Match: A0A1V9ZWS9_9STRA (Glutathione peroxidase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWS9_9STRA)

HSP 1 Score: 147 bits (372), Expect = 6.580e-43
Identity = 75/118 (63.56%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    4 QAVLVVNVATYCGYTDSNYRELQALRAKYDEDKLAILAFPCNQFGAQEPGTHEEILSFVDKQYGVTFSIMNKIDVNGDGADPLFKWLKA--ASGDGRDISWNFTKFLVVGGKEVKRYS 351
            +A+LVVNVA+ CG+T+SNY+ELQ L  KY E  L ILAFPCNQFG QEPG++EEIL+F  K Y VTF I  KIDVNGD ADPLFK+LKA        DI WNFTKFL+  G   KRY+
Sbjct:   38 KAILVVNVASACGFTNSNYKELQTLYNKYHEKGLEILAFPCNQFGGQEPGSYEEILAFTQK-YEVTFPIFQKIDVNGDNADPLFKYLKAELTGTITNDIKWNFTKFLIAYGNPYKRYA 154          
BLAST of mRNA_H-paniculata_contig1849.4553.1 vs. uniprot
Match: A0A5D6YRU9_9STRA (Glutathione peroxidase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YRU9_9STRA)

HSP 1 Score: 148 bits (374), Expect = 6.840e-43
Identity = 77/118 (65.25%), Postives = 85/118 (72.03%), Query Frame = 1
Query:    1 KQAVLVVNVATYCGYTDSNYRELQALRAKYDEDKLAILAFPCNQFGAQEPGTHEEILSFVDKQYGVTFSIMNKIDVNGDGADPLFKWLKAASGD--GRDISWNFTKFLVVGGKEVKRY 348
            K+AVLVVNVA+ CGYTD NYRELQAL AKY+   L ILAFPCNQFGAQEPGT E+I SFV   Y VTF +  K+DVNG  A PLF +LK         DI WNFTKFLVV G+  KRY
Sbjct:   55 KRAVLVVNVASACGYTDQNYRELQALYAKYEARGLEILAFPCNQFGAQEPGTPEQIRSFVHDTYAVTFPVFAKVDVNGARAHPLFAFLKRKLSGFITADIKWNFTKFLVVDGEPFKRY 172          
BLAST of mRNA_H-paniculata_contig1849.4553.1 vs. uniprot
Match: A0A1V9Z3Y6_9STRA (Glutathione peroxidase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z3Y6_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.480e-40
Identity = 67/118 (56.78%), Postives = 88/118 (74.58%), Query Frame = 1
Query:    4 QAVLVVNVATYCGYTDSNYRELQALRAKYDEDKLAILAFPCNQFGAQEPGTHEEILSFVDKQYGVTFSIMNKIDVNGDGADPLFKWL-KAASGD-GRDISWNFTKFLVVGGKEVKRYS 351
            +A+LVVNVA+ CG+TDSNYRELQ+L  KY +  L IL FPCNQFGAQEPG++ +I+++  + Y VTF I  K+DVNGD A P+FK+L +A +G    DI WNFTKFL+  G+   RY+
Sbjct:   43 KAILVVNVASACGFTDSNYRELQSLYTKYHDQGLEILGFPCNQFGAQEPGSYADIVAYTQRNYDVTFPIFQKVDVNGDNAAPVFKYLTEALTGSFTNDIKWNFTKFLIAHGRPYARYA 160          
BLAST of mRNA_H-paniculata_contig1849.4553.1 vs. uniprot
Match: A0A3M6VL97_9STRA (Glutathione peroxidase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VL97_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.560e-40
Identity = 69/118 (58.47%), Postives = 86/118 (72.88%), Query Frame = 1
Query:    4 QAVLVVNVATYCGYTDSNYRELQALRAKYDEDKLAILAFPCNQFGAQEPGTHEEILSFVDKQYGVTFSIMNKIDVNGDGADPLFKWLKAASGDG---RDISWNFTKFLVVGGKEVKRY 348
            + +LVVNVA+ CGYTD NYRELQ L+ KY ++   +L FPCNQFG QEPGT +EI+ F  ++Y VTF I +K+DVNGD A PLF+++K    DG    DI WNFTKFLVV  + VKRY
Sbjct:   52 RVILVVNVASECGYTDKNYRELQELQEKYYDEGFTVLGFPCNQFGGQEPGTADEIMKFTQEKYHVTFPIFSKVDVNGDKAHPLFQFVKKQL-DGFVTNDIKWNFTKFLVVNHEPVKRY 168          
BLAST of mRNA_H-paniculata_contig1849.4553.1 vs. uniprot
Match: W7TAD6_9STRA (Glutathione peroxidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAD6_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.710e-40
Identity = 68/123 (55.28%), Postives = 86/123 (69.92%), Query Frame = 1
Query:    1 KQAVLVVNVATYCGYTDSNYRELQALRAKYDEDKLAILAFPCNQFGAQEPGTHEEILSFVDKQYGVTFSIMNKIDVNGDGADPLFKWLKA-----ASGDGRDISWNFTKFLVVGGKEVKRYSH 354
            K  VL+VNVA+ CGYTDSNYR+LQ L+ KY +D L +LA P N+FG QEPG+  EIL F  ++Y VTF + +K+ VNG  A  L+KWLKA     +S    DI WNFTKFL+V G  VKR++H
Sbjct:   56 KPVVLIVNVASRCGYTDSNYRQLQVLQEKYGDDGLQVLAMPSNEFGGQEPGSDAEILKFTKEKYAVTFPVFSKLLVNGPQASDLYKWLKAETPKDSSSSSADIRWNFTKFLLVNGLPVKRFAH 178          
BLAST of mRNA_H-paniculata_contig1849.4553.1 vs. uniprot
Match: G4ZTH2_PHYSP (Glutathione peroxidase n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZTH2_PHYSP)

HSP 1 Score: 141 bits (355), Expect = 1.800e-40
Identity = 70/118 (59.32%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    4 QAVLVVNVATYCGYTDSNYRELQALRAKYDEDKLAILAFPCNQFGAQEPGTHEEILSFVDKQYGVTFSIMNKIDVNGDGADPLFKWLKAASGDG---RDISWNFTKFLVVGGKEVKRY 348
            + +LVVNVA+ CGYTD NYRELQ L  KY ++   +L FPCNQFG QEPGT E IL F  ++Y VTF +  K+DVNGD A PLFK+LK    DG    DI WNFTKFLVV  +  KRY
Sbjct:    8 RVILVVNVASDCGYTDKNYRELQELYEKYHDEGFMVLGFPCNQFGGQEPGTAEGILKFTQEKYHVTFPLFTKVDVNGDNAHPLFKFLKQQL-DGFITNDIKWNFTKFLVVNHEPFKRY 124          
BLAST of mRNA_H-paniculata_contig1849.4553.1 vs. uniprot
Match: A0A3R7JUE6_9STRA (Glutathione peroxidase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JUE6_9STRA)

HSP 1 Score: 142 bits (357), Expect = 3.400e-40
Identity = 70/116 (60.34%), Postives = 84/116 (72.41%), Query Frame = 1
Query:   10 VLVVNVATYCGYTDSNYRELQALRAKYDEDKLAILAFPCNQFGAQEPGTHEEILSFVDKQYGVTFSIMNKIDVNGDGADPLFKWLKAASGDG---RDISWNFTKFLVVGGKEVKRY 348
            +LVVNVA+ CGYTD NYRELQ L  ++ +D L ILAFPCNQFG QEPGT +EIL F +++Y VTF +  K+DVNGD   PLFK+LK    DG    DI WNFTKFL+V  +  KRY
Sbjct:   57 ILVVNVASECGYTDQNYRELQELYDRHHDDGLMILAFPCNQFGRQEPGTPDEILKFTEEKYHVTFPLFTKVDVNGDKTHPLFKFLKIKL-DGFVTNDIKWNFTKFLIVNHEPFKRY 171          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1849.4553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPS4_9PHAE2.250e-5672.88Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=28... [more]
D8LS13_ECTSI9.840e-4863.03Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A835YHD0_9STRA9.480e-4459.83Glutathione peroxidase n=1 Tax=Tribonema minus Tax... [more]
A0A1V9ZWS9_9STRA6.580e-4363.56Glutathione peroxidase n=1 Tax=Thraustotheca clava... [more]
A0A5D6YRU9_9STRA6.840e-4365.25Glutathione peroxidase n=1 Tax=Pythium brassicum T... [more]
A0A1V9Z3Y6_9STRA1.480e-4056.78Glutathione peroxidase n=1 Tax=Achlya hypogyna Tax... [more]
A0A3M6VL97_9STRA1.560e-4058.47Glutathione peroxidase n=1 Tax=Peronospora effusa ... [more]
W7TAD6_9STRA1.710e-4055.28Glutathione peroxidase n=2 Tax=Monodopsidaceae Tax... [more]
G4ZTH2_PHYSP1.800e-4059.32Glutathione peroxidase n=4 Tax=Phytophthora TaxID=... [more]
A0A3R7JUE6_9STRA3.400e-4060.34Glutathione peroxidase n=3 Tax=Phytophthora kernov... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1849contigH-paniculata_contig1849:1319..2383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.1
Seed ortholog evalue1.3e-36
Seed eggNOG ortholog2880.D8LS13
KEGG rclassRC00011,RC00982
KEGG koko:K00432,ko:K05361
KEGG ReactionR00274,R03167,R07034,R07035
KEGG Pathwayko00480,ko00590,ko04216,ko04918,map00480,map00590,map04216,map04918
Hectar predicted targeting categoryother localisation
EggNOG free text desc.glutathione peroxidase activity
EggNOG OGsCOG0386@1,KOG1651@2759
EC1.11.1.12,1.11.1.9
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929432.2823684-CDS-H-paniculata_contig1849:1318..15371622929432.2823684-CDS-H-paniculata_contig1849:1318..1537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1849 1319..1537 +
1691480858.7727852-CDS-H-paniculata_contig1849:1318..15371691480858.7727852-CDS-H-paniculata_contig1849:1318..1537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1849 1319..1537 +
1622929432.2979941-CDS-H-paniculata_contig1849:2239..23831622929432.2979941-CDS-H-paniculata_contig1849:2239..2383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1849 2240..2383 +
1691480858.7849293-CDS-H-paniculata_contig1849:2239..23831691480858.7849293-CDS-H-paniculata_contig1849:2239..2383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1849 2240..2383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1849.4553.1prot_H-paniculata_contig1849.4553.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1849 1319..2383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1849.4553.1

>prot_H-paniculata_contig1849.4553.1 ID=prot_H-paniculata_contig1849.4553.1|Name=mRNA_H-paniculata_contig1849.4553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
KQAVLVVNVATYCGYTDSNYRELQALRAKYDEDKLAILAFPCNQFGAQEP
GTHEEILSFVDKQYGVTFSIMNKIDVNGDGADPLFKWLKAASGDGRDISW
NFTKFLVVGGKEVKRYSHQVT
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mRNA from alignment at H-paniculata_contig1849:1319..2383+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1849.4553.1 ID=mRNA_H-paniculata_contig1849.4553.1|Name=mRNA_H-paniculata_contig1849.4553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1065bp|location=Sequence derived from alignment at H-paniculata_contig1849:1319..2383+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACAGGCGGTGCTGGTGGTCAATGTGGCAACCTATTGTGGTTACACTGA CAGCAACTACAGGGAATTGCAGGCTCTTCGCGCCAAATACGACGAGGACA AGTTGGCTATCCTCGCGTTCCCATGCAACCAGTTTGGTGCTCAAGAGCCA GGCACTCACGAGGAAATCCTTAGCTTCGTAGACAAGCAGTACGGCGTCAC TTTCTCCATCATGAACAAGGTGCTGTTGATGTCCGTATTTCTTCAAGGTC TGTCGTGTTCAAGGGTATTGCTGTCATCTTGCGTGCGACAATTAAGCAGC GAAATCGTTGAACTAATTGCCCACGAGAGACTTCTGAGCAGGTCAGATGT TTTGCCGGGGTTCAGGACCGATGCTTCGTGTGATGTGTCATTTTTTCGAC TGATGTATTGTGTAGTTATGTCGACGATGATAGTATAAAGCATGCTTAAG AACTTTGGACCGAAAGTAAAACAGCGGACACGAAATGCCTCTCGTTATGA TGCCCGTTGAAATTTCGCTTGAAGTAGTCGGGATGTCGTTCAACTCGTTT CCCATCAGCAGTTGTAGTTATGCACGCCCTGTGTTGCAGCGCTGTTGATA CAGCACACTTATCGCATATAGTACCCCAAGAACCTGCTGCAATCACTCTG CAACGGTTTCAAGAATTCTGAACAAAGCTCCTCATCTGGTATATGCCACA GTGGATGGCTGTTCCAGTGTAGCCATTTTCTCGTACTGATCTTCGTCAAT TCTGTCTGTGCTCCGTTTGCCTCTACAAAGACATGCTTTTCACATCCGTT CCACAAGTTTACGAAGTACGGTAGCAGAGTAATTTTGTATATTTACGGAA AAGTATTTAATTTTGCAATGCAAAAGCTGAACACCTTACCTAAACTGTGC TAAATCGATTGTATACACTAGATTGACGTAAACGGTGACGGGGCTGACCC TCTCTTCAAGTGGCTCAAGGCTGCGTCGGGAGACGGACGCGACATTTCTT GGAACTTCACCAAATTTCTAGTGGTCGGCGGCAAGGAGGTCAAGAGATAC TCTCACCAGGTAACA
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Coding sequence (CDS) from alignment at H-paniculata_contig1849:1319..2383+

>mRNA_H-paniculata_contig1849.4553.1 ID=mRNA_H-paniculata_contig1849.4553.1|Name=mRNA_H-paniculata_contig1849.4553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig1849:1319..2383+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACAGGCGGTGCTGGTGGTCAATGTGGCAACCTATTGTGGTTACACTGA
CAGCAACTACAGGGAATTGCAGGCTCTTCGCGCCAAATACGACGAGGACA
AGTTGGCTATCCTCGCGTTCCCATGCAACCAGTTTGGTGCTCAAGAGCCA
GGCACTCACGAGGAAATCCTTAGCTTCGTAGACAAGCAGTACGGCGTCAC
TTTCTCCATCATGAACAAGAAACAGGCGGTGCTGGTGGTCAATGTGGCAA
CCTATTGTGGTTACACTGACAGCAACTACAGGGAATTGCAGGCTCTTCGC
GCCAAATACGACGAGGACAAGTTGGCTATCCTCGCGTTCCCATGCAACCA
GTTTGGTGCTCAAGAGCCAGGCACTCACGAGGAAATCCTTAGCTTCGTAG
ACAAGCAGTACGGCGTCACTTTCTCCATCATGAACAAGATTGACGTAAAC
GGTGACGGGGCTGACCCTCTCTTCAAGTGGCTCAAGGCTGCGTCGGGAGA
CGGACGCGACATTTCTTGGAACTTCACCAAATTTCTAGTGGTCGGCGGCA
AGGAGGTCAAGAGATACTCTCACCAGGTAACAATTGACGTAAACGGTGAC
GGGGCTGACCCTCTCTTCAAGTGGCTCAAGGCTGCGTCGGGAGACGGACG
CGACATTTCTTGGAACTTCACCAAATTTCTAGTGGTCGGCGGCAAGGAGG
TCAAGAGATACTCTCACCAGGTAACA
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