mRNA_H-paniculata_contig18485.4551.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18485.4551.1
Unique NamemRNA_H-paniculata_contig18485.4551.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18485.4551.1 vs. uniprot
Match: D7FM27_ECTSI (FAP9, Ras superfamily GTPase-like flagellar protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM27_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 8.410e-29
Identity = 55/91 (60.44%), Postives = 68/91 (74.73%), Query Frame = 1 
Query:    1 SFEACWPAVVKDLDGVIIVYNPEIPAHDTEVGIWYDQFVKRQKLADEQCQVFVHSTSRTPAPRSRPREKLAWLYG--INT-FVSLIQSQSG 264
            +FE+CWPA++K +DGV++VYNPEIP HD EVGIW+DQFVKR KL + QCQV  H  S TPAPRSR   KLA L G  ++T F S+ Q  +G
Sbjct:   75 AFESCWPAIMKGVDGVMLVYNPEIPTHDIEVGIWFDQFVKRPKLDNRQCQVIAHRASPTPAPRSRLPPKLASLSGNILHTNFASVSQVITG 165
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BLAST of mRNA_H-paniculata_contig18485.4551.1 vs. uniprot
Match: A0A6H5LH24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LH24_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.800e-23
Identity = 50/82 (60.98%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:   28 VKDLDGVIIVYNPEIPAHDTEVGIWYDQFVKRQKLADEQCQVFVHSTSRTPAPRSRPREKLAWLYG--INT-FVSLIQSQSG 264
            +KD+DGV++VYNPEIP HD EVGIW+DQFVKR KL + QCQV  H  S TPAPRSR   KLA L G  ++T F S+ Q  +G
Sbjct:    1 MKDVDGVMLVYNPEIPTHDIEVGIWFDQFVKRPKLDNRQCQVIAHRASPTPAPRSRLPPKLASLSGNILHTNFASVSQVITG 82
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BLAST of mRNA_H-paniculata_contig18485.4551.1 vs. uniprot
Match: A0A836CPS0_9STRA (FAP9, ras superfamily GTPase-like flagellar protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPS0_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 7.150e-20
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:    1 SFEACWPAVVKDLDGVIIVYNPEIPAHDTEVGIWYDQFVKRQKLADEQCQVFVHSTSRTPAPRSRPREKLAWLYGINTFVSLIQS 255
            S+E CWPA++KD DGV++V+NPEIP H+ E+  WYDQF    K+  E C V  H     P PR R   KLA +  ++T  +  Q+
Sbjct:   74 SYETCWPAIIKDADGVVLVFNPEIPTHEPEIATWYDQFALGPKVPIECCLVVAHRADPKPVPRPRVPPKLANVAAVSTSFASAQA 158
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BLAST of mRNA_H-paniculata_contig18485.4551.1 vs. uniprot
Match: A0A6T7C6H5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7C6H5_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 9.500e-17
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    1 SFEACWPAVVKDLDGVIIVYNPEIPAHDTEVGIWYDQFVKRQKLADEQCQVFVHSTSRTPAPRSRPREKLAWLYGINT 234
             FE+CWPA+++D+DGV++VYNP+   HD E+G WYD FVK   L   QC +  H  +++    +RP  KL  +  ++T
Sbjct:   89 QFESCWPAIMQDVDGVVLVYNPDKDGHDIEIGDWYDYFVKNNDLEPSQCIILAHHPAQSHRGMTRPPPKLKAVKVVDT 166
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BLAST of mRNA_H-paniculata_contig18485.4551.1 vs. uniprot
Match: F0Y462_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y462_AURAN)

HSP 1 Score: 79.7 bits (195), Expect = 6.870e-16
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:    1 SFEACWPAVVKDLDGVIIVYNPEIPAHDTEVGIWYDQFVKRQKLADEQCQVFVHSTSRTPAPRSRPREKLAWLYGINTFV 240
             +E+CWPA++KD  GVI+VYNP+   H +E G WYD FVK  +L DE C VF    +     R R   KL  L  IN  +
Sbjct:   67 DYESCWPAIMKDTAGVILVYNPDNEGHVSESGAWYDYFVKNNELPDEACVVFAFDPNAQRGTRQRTSPKLQHLNVINASL 146
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BLAST of mRNA_H-paniculata_contig18485.4551.1 vs. uniprot
Match: UPI001CB861FC (intraflagellar transport protein 22 homolog isoform X5 n=1 Tax=Chiloscyllium plagiosum TaxID=36176 RepID=UPI001CB861FC)

HSP 1 Score: 78.2 bits (191), Expect = 2.460e-15
Identity = 31/76 (40.79%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:    1 SFEACWPAVVKDLDGVIIVYNPEIPAHDTEVGIWYDQFVKRQKLADEQCQVFVHSTSRTPAPRSRPREKLAWLYGI 228
             FE CWPA+VKD +GV+IV+N ++P+H  E+ ++Y  FV++ +L D QC +  H    + A + RP     W++GI
Sbjct:   71 KFETCWPALVKDSNGVVIVFNVDVPSHLKEIEMFYSSFVQQPRLHDSQCLLVAHHKPNSAAGKGRPNLGGQWIFGI 146
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BLAST of mRNA_H-paniculata_contig18485.4551.1 vs. uniprot
Match: A0A6P8NPY0_GEOSA (intraflagellar transport protein 22 homolog isoform X1 n=6 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8NPY0_GEOSA)

HSP 1 Score: 79.3 bits (194), Expect = 2.550e-15
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:    1 SFEACWPAVVKDLDGVIIVYNPEIPAHDTEVGIWYDQFVKRQKLADEQCQVFVHSTSRTPAPRSRP 198
             FE CWPA++KD  GV+IV+NP++P+H  E+ +WY  FV++Q+L D QC +  H    + A +SRP
Sbjct:   74 KFETCWPAMMKDSHGVVIVFNPDLPSHLKEIEMWYASFVQQQQLQDNQCLLIAHHKPGSGADKSRP 139
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BLAST of mRNA_H-paniculata_contig18485.4551.1 vs. uniprot
Match: A0A7S1XMT3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMT3_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.920e-15
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:    1 SFEACWPAVVKDLDGVIIVYNPEIPAHDTEVGIWYDQFVKRQKLADEQCQVFVHSTSRTPAPRSRP 198
            SFE CWPA++ D DGV++VYNP  PAH+TE+ +W+D FV  Q +   +C V+ HS +     + RP
Sbjct:   74 SFENCWPAIMSDADGVVLVYNPGNPAHETEIVLWHDYFVSGQGVDHSRCLVYAHSGNEDGPDKRRP 139
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BLAST of mRNA_H-paniculata_contig18485.4551.1 vs. uniprot
Match: W2MYF0_PHYPR (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2MYF0_PHYPR)

HSP 1 Score: 76.3 bits (186), Expect = 1.850e-14
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 SFEACWPAVVKDLDGVIIVYNPEIPAHDTEVGIWYDQFVKRQKLADEQCQVFVHST 168
            ++EACWPAV+K+ DGVI+VYNPE   H++E  +WY+ F++   L   QC VF HST
Sbjct:   64 NYEACWPAVMKETDGVILVYNPESHVHESEAMLWYEWFIQNAGLDSSQCLVFEHST 119
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BLAST of mRNA_H-paniculata_contig18485.4551.1 vs. uniprot
Match: A0A835NYY3_9PASS (Uncharacterized protein n=4 Tax=Neognathae TaxID=8825 RepID=A0A835NYY3_9PASS)

HSP 1 Score: 76.3 bits (186), Expect = 2.530e-14
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    1 SFEACWPAVVKDLDGVIIVYNPEIPAHDTEVGIWYDQFVKRQKLADEQCQVFVHSTSRTPAPRSRPREKLAWLYGINTFVSLIQS 255
             FE CWPA++KD  GVII++NPE+P+H  E+ +WY  FV++Q L D QC +  H    +P       E L+  Y +N  + LI S
Sbjct:   69 KFETCWPALMKDSHGVIIIFNPELPSHLKEIEMWYSCFVQQQPLLDSQCLLVAHHKPGSPGDT----ENLSLAYPLNK-LKLIHS 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18485.4551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM27_ECTSI8.410e-2960.44FAP9, Ras superfamily GTPase-like flagellar protei... [more]
A0A6H5LH24_9PHAE1.800e-2360.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CPS0_9STRA7.150e-2044.71FAP9, ras superfamily GTPase-like flagellar protei... [more]
A0A6T7C6H5_9STRA9.500e-1742.31Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0Y462_AURAN6.870e-1645.00Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
UPI001CB861FC2.460e-1540.79intraflagellar transport protein 22 homolog isofor... [more]
A0A6P8NPY0_GEOSA2.550e-1546.97intraflagellar transport protein 22 homolog isofor... [more]
A0A7S1XMT3_9STRA3.920e-1546.97Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W2MYF0_PHYPR1.850e-1453.57Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A835NYY3_9PASS2.530e-1442.35Uncharacterized protein n=4 Tax=Neognathae TaxID=8... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18485contigH-paniculata_contig18485:1682..3260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue8.1e-23
Seed eggNOG ortholog2880.D7FM27
Preferred nameIFT22
KEGG koko:K07935,ko:K07976
Hectar predicted targeting categoryother localisation
GOsGO:0002119,GO:0002164,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008340,GO:0009791,GO:0009987,GO:0010259,GO:0010970,GO:0015630,GO:0016043,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030705,GO:0030990,GO:0030992,GO:0031503,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0033036,GO:0035735,GO:0040024,GO:0042073,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0046907,GO:0048009,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060271,GO:0065007,GO:0070925,GO:0071840,GO:0097014,GO:0097542,GO:0097546,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.GTP binding
EggNOG OGs29S7E@1,2RXD4@2759
Ec32 ortholog descriptionFAP9, Ras superfamily GTPase-like flagellar protein
Ec32 orthologEc-01_010420.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04031
Exons2
Model size475
Cds size354
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18485.4551.1prot_H-paniculata_contig18485.4551.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18485 1682..3139 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929432.0995426-CDS-H-paniculata_contig18485:1681..17821622929432.0995426-CDS-H-paniculata_contig18485:1681..1782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18485 1682..1782 +
1691480858.733644-CDS-H-paniculata_contig18485:1681..17821691480858.733644-CDS-H-paniculata_contig18485:1681..1782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18485 1682..1782 +
1622929432.1145442-CDS-H-paniculata_contig18485:2886..31391622929432.1145442-CDS-H-paniculata_contig18485:2886..3139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18485 2887..3139 +
1691480858.7472703-CDS-H-paniculata_contig18485:2886..31391691480858.7472703-CDS-H-paniculata_contig18485:2886..3139Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18485 2887..3139 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929432.1527112-UTR-H-paniculata_contig18485:3139..32601622929432.1527112-UTR-H-paniculata_contig18485:3139..3260Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18485 3140..3260 +
1691480858.754903-UTR-H-paniculata_contig18485:3139..32601691480858.754903-UTR-H-paniculata_contig18485:3139..3260Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18485 3140..3260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18485.4551.1

>prot_H-paniculata_contig18485.4551.1 ID=prot_H-paniculata_contig18485.4551.1|Name=mRNA_H-paniculata_contig18485.4551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
SFEACWPAVVKDLDGVIIVYNPEIPAHDTEVGIWYDQFVKRQKLADEQCQ
VFVHSTSRTPAPRSRPREKLAWLYGINTFVSLIQSQSGNLWRCRRRNVSG
LPLFSLIYRNVRSCSLQ*
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mRNA from alignment at H-paniculata_contig18485:1682..3260+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18485.4551.1 ID=mRNA_H-paniculata_contig18485.4551.1|Name=mRNA_H-paniculata_contig18485.4551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1579bp|location=Sequence derived from alignment at H-paniculata_contig18485:1682..3260+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTTCGAGGCGTGCTGGCCGGCTGTTGTGAAGGATTTGGACGGAGTAAT
AATCGTCTACAATCCAGAGATACCCGCCCACGACACCGAGGTGGGGATCT
GGTGAGAACTGAATGAGCGTTCGTTCGGTTAGGCACTGCGTCTCCGTCCA
GCCTCCCGAGATGAATTCAGCGGCGTCAAGATAAACACAGTGCATATCTT
CCCCGTGAAACGTAGGGCACAACAAGTTCCGTCTCATTTGTAAGAAGAAG
GAAATACCAATATGGGCACAGGATGATTTATACCCCATAAAGATGCAGCC
GTTCTGTAGTATTCCCGTGTTGTCAGGGGCTACAAGGTCAGTGTTCCGTG
ATACCCCCGATATAGAGGGGGGGAGGGGGTATATTGGATCCGTTTTGGCA
ACCCTGGCAACCCGTTATAGCCTCCCGTTCGGATCGCTTGTGAAAGATTT
CGTTCGGACGTTGAGGTATTATCGCACAAGCTTGGCTGCCAAAGTATTCT
GGAAGTATGGCACACTCTCTACGAAATACGATGTGCTAGTCGACCATATG
ACACCGCACGAAGAAAACAAGAGGTGGCTGATCAGGAATATGACCAGTTG
AATCGGTATACTGTGGTTCAGCCTTCATACACGTTGCAGGCGTCAGCAGA
TGTACCGACAACTCTTGCTGCAGGATATGCCAAATGTATGCAAGCGATAA
TTATGTTTCGTCTCTGTAACCCCGTCAAGATAAGCAGGTACTACGTACAC
GTACGCGCACACGTGGAGTAAAGGGTGTTAATAAATAGACACACTGGCTA
TCTAATCAATACTTCGAAGCATATAACTCATAGACACAAGAGTGACTACG
TACTGTTCCAGATACACGTGGCGCAGTAACGTAAGAAAAACGGTGGTTTT
AAGAGTTCTGGTAATCAGTAGGTTGAGGAATTACCAGGGTGGGCGTAGTG
AGTAAGCCCCACTCCTCCTGTCTCATTCTTTTCTAACCACTGAACTTCGA
CACGGTTTGTTCTTCCACAGGCTTTCTTACCGTCAAGCGGCCCTTTCAAC
CATCATCTATCACCTGTAGCCTTTGGCACAGCATGTTTCCTTGGTCAGCA
GCTCAACAGCTAATAGTGCCACCTTGTGCAGTTACTTGCAAGTGTATCTC
CAGATATTTTCAACAAAATACACCGCGTTTTGTGTGTGCTCCGCTTGCCC
CTCAGGTACGACCAATTTGTCAAGAGGCAGAAGCTCGCCGATGAGCAGTG
CCAAGTATTTGTGCACAGTACCAGCCGAACGCCGGCCCCAAGATCGAGAC
CACGTGAGAAGCTTGCTTGGTTATACGGCATAAATACATTTGTTTCATTG
ATTCAGTCTCAATCTGGTAATCTTTGGAGGTGCCGCCGTAGAAACGTTTC
TGGTCTTCCCTTGTTCAGTTTGATTTACAGGAATGTTCGCTCATGCTCGC
TACAATAAATAGAACGCAAAGAACAGTACAAAAGGTCACGTCTGACTCGG
GCATTATTGCAAGTCAACGTCGCAGTATTGTGTACACGGTCGGTAGTGGA
CGTTTGCTTACATCTGCTGCTACTACTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig18485:1682..3260+

>mRNA_H-paniculata_contig18485.4551.1 ID=mRNA_H-paniculata_contig18485.4551.1|Name=mRNA_H-paniculata_contig18485.4551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig18485:1682..3260+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTTCGAGGCGTGCTGGCCGGCTGTTGTGAAGGATTTGGACGGAGTAAT
AATCGTCTACAATCCAGAGATACCCGCCCACGACACCGAGGTGGGGATCT
GAGCTTCGAGGCGTGCTGGCCGGCTGTTGTGAAGGATTTGGACGGAGTAA
TAATCGTCTACAATCCAGAGATACCCGCCCACGACACCGAGGTGGGGATC
TGGTACGACCAATTTGTCAAGAGGCAGAAGCTCGCCGATGAGCAGTGCCA
AGTATTTGTGCACAGTACCAGCCGAACGCCGGCCCCAAGATCGAGACCAC
GTGAGAAGCTTGCTTGGTTATACGGCATAAATACATTTGTTTCATTGATT
CAGTCTCAATCTGGTAATCTTTGGAGGTGCCGCCGTAGAAACGTTTCTGG
TCTTCCCTTGTTCAGTTTGATTTACAGGAATGTTCGCTCATGCTCGCTAC
AATAAGTACGACCAATTTGTCAAGAGGCAGAAGCTCGCCGATGAGCAGTG
CCAAGTATTTGTGCACAGTACCAGCCGAACGCCGGCCCCAAGATCGAGAC
CACGTGAGAAGCTTGCTTGGTTATACGGCATAAATACATTTGTTTCATTG
ATTCAGTCTCAATCTGGTAATCTTTGGAGGTGCCGCCGTAGAAACGTTTC
TGGTCTTCCCTTGTTCAGTTTGATTTACAGGAATGTTCGCTCATGCTCGC
TACAATAA
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