mRNA_H-paniculata_contig1846.4544.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1846.4544.1 vs. uniprot
Match: A0A6H5JZT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZT1_9PHAE) HSP 1 Score: 360 bits (923), Expect = 3.730e-119 Identity = 183/279 (65.59%), Postives = 226/279 (81.00%), Query Frame = 3
Query: 30 SRSQRAAFRSLIMGNDGPDVLKTVGAVVILLATVGGSALPFLSLAPE--TSGPKTVRVVDEEGNTSERGSMTAMTRAEIQKKLAQVPVFFLRDPNGGVHVDGGEGLFFMNPADAQAKIAGMTGVDGVKVSATTLDDVWYPLIKKKGQNKKSVAAEAAVNSDLSARYRIIPRVDQVSQASGTDGWNSVGDKDGVPVWAANSLAFQ-AGSRYKTPLFTNMDDLMTSWQRLKTEAGSKSEAPVVQVSSIGAIVEIMESGGGDNRNLEFFADMDSIEQAEKLL 857
SR+ RSL M P+ KT+G V+I+ +T+G SA+PFLSL P+ + GPKTVRVVDE+GNTSERG +TAMTR EIQKKL+Q+PVFFLRD +G VHV+ GEGLFFM+P DA+ K+ + G +G KV+ATTLDD+WYPLIKKKG NKK VAA A+ SDLS RYRIIPR +QV+QA T GWN+V D GVPVWAA +LAF+ AG++ K PLFTN+DDLMTSW RL+TE GS++++P +QVSSIGAI+++M+ GGGD RNLEFFADMD+IEQAEKLL
Sbjct: 55 SRNPARGVRSLSMTK--PNFTKTLGTVLIVGSTIGVSAIPFLSLGPQQQSKGPKTVRVVDEDGNTSERGILTAMTRPEIQKKLSQIPVFFLRDESGAVHVENGEGLFFMSPGDAKEKLQDLKGAEGTKVAATTLDDIWYPLIKKKGLNKKPVAAGASGLSDLSCRYRIIPRSNQVAQALETQGWNAVADAGGVPVWAAETLAFRGAGNKMKLPLFTNVDDLMTSWDRLETEGGSEAKSPTIQVSSIGAIIDMMQRGGGDQRNLEFFADMDAIEQAEKLL 331
BLAST of mRNA_H-paniculata_contig1846.4544.1 vs. uniprot
Match: D7G9I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I2_ECTSI) HSP 1 Score: 293 bits (751), Expect = 5.340e-86 Identity = 155/277 (55.96%), Postives = 199/277 (71.84%), Query Frame = 3
Query: 30 SRSQRAAFRSLIMGNDGPDVLKTVGAVVILLATVGGSALPFLSLAPETSGPKTVRVVDEEGNTSERGSMTAMTRAEIQKKLAQVPVFFLRDPNGGVHVDGGEGLFFMNPADAQAKIAGMTGVDGVKVSATTLDDVWYPLIKKKGQNKKSVAAEAAVNSDLSARYRIIPRVDQVSQASGTDGWNSVGDKDGVPVWAANSLAFQA-GSRYKTPLFTNMDDLMTSWQRLKTEAGSKSEAPVVQVSSIGAIVEIMESGGGDNRNLEFFADMDSIEQAEKLL 857
SR+ R L M P+ KT+G V+I+ +T+G SA+PFLSL P+ + + A++ + ++PVFFLRD +G VHV+ GEGLFFM+P DA+ K+ + G +G KV+ATTLDDVWYPLIKKKG NK SVAA A+ SDLSARYRIIPR +QV+QA T GWN+V D GVPVWAA +LAF+ G++ K PLFTN+DDLMTSW RL+TE GS++++P +QVSSIGAI+++M+ GGGD RNLEFFADMD+IEQAEKLL
Sbjct: 820 SRNHARGVRPLSMTK--PNFTKTLGTVLIVGSTIGVSAIPFLSLGPQQQALR----------------LYALSTKTVTLPK-EIPVFFLRDESGAVHVENGEGLFFMSPGDAKEKLQDLKGAEGTKVAATTLDDVWYPLIKKKGLNKNSVAAGASGLSDLSARYRIIPRSNQVAQALETQGWNAVADAGGVPVWAAETLAFRGTGNKMKLPLFTNVDDLMTSWDRLETEGGSEAKSPTIQVSSIGAIIDMMQRGGGDQRNLEFFADMDAIEQAEKLL 1077
BLAST of mRNA_H-paniculata_contig1846.4544.1 vs. uniprot
Match: A0A835YYZ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYZ9_9STRA) HSP 1 Score: 152 bits (384), Expect = 5.100e-38 Identity = 120/363 (33.06%), Postives = 166/363 (45.73%), Query Frame = 3
Query: 9 APSGADRSRSQRAAFRSLIMGNDGPDVLKTVGAVVILLATVGGSALPFLSLAPETS----GPK-TVRVVDEEGNTSERGSMTA------------------MTRAEIQKKLAQVPVFFLRDPNGGVHVDG-GEGLFFMNPADAQAKIAGMTGVDG---VKVSATTLDDVWYPLIKKKGQNKKS----------------------------------------VAAEAAVNS--------DLSARYRIIPRVDQVSQASGT-DGWNSVGDKDGVPVWAANSLAFQAG---SRYKTPLFTNMDDLMTSWQRLKTEAG-SKSEAPVVQVSSIGAIVEIMESGGGDNRNLEFFADMDSIEQAEKLL 857
AP + S AA R+L M +V L VG S + L+ P + P+ TV+V E G +RG++T+ +TR EIQKKL+Q+PVF++ + GG +V G G G F+M+ DA A +A ++ + V+ATTLDDVWYPLI +KG +S + A + S D A YR++ Q + A W + VP+W A+ LAF G + K PLFT ++DL SW RLK +AG S + P VQVSS+ A V E GGG+ R LEF+ D++SIE AEKL
Sbjct: 50 APVASRASHRAGAAARTLRMAEGKASGASVAFVLVALALFVGASVMTLLNAPPPAATSSYAPQGTVKVTTESGRVVQRGALTSVCYFTNTTPGACCHGRRSLTRGEIQKKLSQLPVFYISNAQGGAYVGGDGIGRFYMSADDAAADLAALSDAAAPSELSVAATTLDDVWYPLIARKGGASQSARWYAFAARYAGXXXXXXXXXXXXXXXXXXXXXXAGAVLYIRAHVLMKSMRSLEGVSDQHATYRLVASKAQAAHADEVLPTWRGSEGEGAVPLWIADRLAFAGGYGGGKVKIPLFTTLEDLNASWARLKGDAGGSGAPTPAVQVSSLQATVSKFERGGGNARLLEFYPDIESIEAAEKLF 412
BLAST of mRNA_H-paniculata_contig1846.4544.1 vs. uniprot
Match: A0A7S2V776_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V776_9STRA) HSP 1 Score: 121 bits (304), Expect = 2.350e-27 Identity = 76/233 (32.62%), Postives = 131/233 (56.22%), Query Frame = 3
Query: 171 TSGPKTVRVVDEEGNTSERGSMTAMTRAEIQKKLAQVPVFFLRDPNGGVHVDGGEGLFFMNPADAQAKIAGMTGVDG-VKVSATTLDDVWYPLIKKKGQNKKSVAAEAAVNSDLSARYRII-PRVDQVSQASGTDGWNSVGDKDGVPVWAANSLAFQ-AGSRYKTPLFTNMDDLMTSWQRLKTEAGSKSEAPV-VQVSSIGAIVEIMESGGGDNRNLEFFADMDSIEQAEKLL 857
TSG +V+E+G +RG T + E+ +KLA VPVF+++ GGV ++ G+G F+ + ++A+A + G D KVS T LD+V++ LI+KK + +++ V SD +A Y ++ P++ A + DG+P++A+ LAF+ A R + PLF + DL ++W +L+ S+ P V+V+ + I+ M SGG D R LEF+ +++ +L+
Sbjct: 111 TSGRPASVMVEEDGQMVKRGIYTKFSTGEMNRKLAAVPVFYVKSSAGGVALENGQGTFYTDVSEAEAAFERIKGSDSDAKVSTTALDEVYFSLIRKKIKTVGGLSSPLVVASDATATYTVVSPKLAMEDAAMVNKDYTP----DGIPLFASQKLAFRDAEGRQQIPLFLSYQDLESTWGKLREANPKLSKIPEQVEVTGLNYILGEMASGGQDFRLLEFYPTSKALDSYSELI 339
BLAST of mRNA_H-paniculata_contig1846.4544.1 vs. uniprot
Match: A0A0G4F5C5_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F5C5_VITBC) HSP 1 Score: 114 bits (284), Expect = 4.900e-25 Identity = 78/230 (33.91%), Postives = 127/230 (55.22%), Query Frame = 3
Query: 213 NTSERGSM-TAMTRAEIQKKLAQVPVFFLRDPNGGVHVD-GGE---GLFFMNPADAQAKIAGMTGVDGVK-----VSATTLDDVWYPLIKKKGQNKKSVAAEAAVNSDLSARYRIIPRVDQVSQASGT-DGWNSVGDKDG-VPVWAANSLAFQAG-----SRYKTPLFTNMDDLMTSWQRLKTEAGSKSEAPVVQVSSIGAIVEIMESGGG--DNRNLEFFADMDSIEQA 845
N + R M A++RAEI +KL QVPVF++ +G V++D G+ G FF+ P++A + + D ++ + A L DV++PL+KK+G+ K D SA + ++P +++ A W+ K G VP+W SLAF+ SR + PLF ++DL SW+RLK E+ + + P V+ S++G+ VE++E GG + EFF D+I++A
Sbjct: 55 NVNPRAQMGQALSRAEITRKLDQVPVFYVVTSDGRVNIDQSGDRRMGRFFLEPSEATQALEDLKMSDYIQWKDAFIGAARLGDVYFPLVKKEGKLKSF-----PYYVDTSAAFAVVPSNKELANAQKRIPNWSEGPGKAGEVPIWGTQSLAFEGDGDSPTSRLRIPLFIRLEDLEESWRRLKAESPTLPDKPDVRASTLGSSVEMLEEGGTPLSPKVFEFFPSPDAIQKA 279
BLAST of mRNA_H-paniculata_contig1846.4544.1 vs. uniprot
Match: A0A7S4IB04_9STRA (Hypothetical protein n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IB04_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.790e-18 Identity = 84/281 (29.89%), Postives = 139/281 (49.47%), Query Frame = 3
Query: 78 GPDVLKTVGAVVILLATVGGSALPFL-SLAPETSGPKTVRVVDEEGNTSERGSMTAM---------TRAEIQKKLAQVPVFFLRDPNGGVHVDGGEGLFFMNPADAQAKIAGMTGVDGVKVSATTLDDVWYPLIKKKGQNKKSVA------AEAAVNSDLSA---RYRIIPRVDQVSQASGTDGWNSVGDKDGVPVWAANSLAFQAGSRYKTPLFTNMDDLMTSWQRLKTEAGSK-SEAPVVQVSSIGAIVEIMESGGGDN-RNLEFFADMDSIEQAEKLL 857
GP ++ T+ IL+ +G S PFL S +TS T ++ + + ++ M +R +IQ+KL+ +P F+L D G G + + ADA+A + + V ATTLD V YPL+ K+G+ K + AE A+ SA Y++IP V A+G + GD VP++ A+ +AF + S + PLF +D +TS++RL+ G+K E P ++ S++ ++ ME G L F+A + QA++L+
Sbjct: 98 GPGIVTTIALAGILVIFLGSSVAPFLDSFNSDTSDSVTSQLANTAVTRQDPDALKQMQYQSKYDRLSRTKIQEKLSGMPAFYLVDGTTGEM----SGEIYTSYADAKAASEASSSM----VKATTLDQVMYPLVLKRGRTKMAPPPQEVKRAEEAIERHGSAGSKTYKLIPSAAAVEGAAGMKMELANGD---VPLFIADRVAFASSSGPQVPLFLEKEDAVTSYRRLREAGGNKLPEEPNIRSSTLLEEIDSMERGTRPGVSQLAFYAPERDLIQADELM 367
BLAST of mRNA_H-paniculata_contig1846.4544.1 vs. uniprot
Match: A0A448YVR1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVR1_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 2.100e-16 Identity = 83/270 (30.74%), Postives = 131/270 (48.52%), Query Frame = 3
Query: 30 SRSQRAAFRSLIMGNDGPD----VLKTVGAVVILLATVGGSALPFLSLAPETSGPKTVRVVDEEGNTSER--GSMT-AMTRAEIQKKLAQVPVFFLRDPNGGVHVDGGEGL---FFMNPADAQAKIAGMTGVDGVKVSATTLDDVWYPLIKKKGQNKKSVA------AEAAVNS-DLSARYRIIPRVDQVSQASGTDGWNSVGDKDGVPVWAANSLAFQAGSRYKTPLFTNMDDLMTSWQRLKTEAGSKSEAPVVQVSSIGAIVEIMESG 788
SR Q + +L M + D ++ A V+L + GS +P S P VV + ++ GS T A++R+ IQ+KL VPVF++ G DG + +M+ +DA K+A + V TTLD V YPL+ K+G+ + + AEA + + D S +R++P V QA D S D VP++ A+ LAF + + PLF N DD +TS++RL+ S E P ++ +++ + ME G
Sbjct: 5 SRIQNSKMTTLSMVREPDDRPGLSFSSIVAGVLLAVFLXGSLIPLAGTFDLKSAPIADSVVTRQDQPGKQIAGSKTYALSRSAIQEKLNTVPVFYVATTGG----DGSAQMSTDIYMSYSDA--KVAS-DSIPSSSVKGTTLDQVMYPLVLKRGRMRMAPPPAEIEQAEAKIMAGDRSDIFRLVPSKISVEQAKQLDLETSQSD---VPLFIADRLAFASTKGAQLPLFLNKDDCITSYKRLREAKSSLPEQPNIRTTTLLETLISMEKG 264
BLAST of mRNA_H-paniculata_contig1846.4544.1 vs. uniprot
Match: B5YM12_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YM12_THAPS) HSP 1 Score: 85.9 bits (211), Expect = 1.280e-14 Identity = 63/215 (29.30%), Postives = 114/215 (53.02%), Query Frame = 3
Query: 240 AMTRAEIQKKLAQVPVFFLRDPNGGVHVDGGEGLFFMNPADAQAKIAGMTGVDGVKVSATTLDDVWYPLIKKKGQNKKSVAAEAAVNS-----DLSARYRIIPRVDQVSQASGTDGWNSVGDKDGVPVWAANSLAFQA-GSRYKTPLFTNMDDLMTSWQRLKTEAGSK-SEAPVVQVSSIGAIVEIMESGG--GDNRNLEFFADMDSIEQAEKLL 857
A++ +IQ+KL +PVF++ D G + G E ++F + ++A++ G+ G VKV TTLD + YPLI K+G K S + S Y+++P ++ A T GD +P++ LAF + + PLF D +TS+ RL+ G+K E P ++ +S+ +++ ME G G R L+F+ +++ + +A++++
Sbjct: 176 ALSMEKIQEKLENLPVFYVGDGRG---IMGNENVYF-SYSEAESAAKGIGGSSVVKV--TTLDQIMYPLILKRGNVKVSSVTPVEIRSAQQQQSADKTYKLVPSAAALNDAKDTSTTLKEGD---IPLFIVERLAFAGPDGKPQVPLFLEKIDAITSYARLRESGGNKLPEEPTLRTTSLLDVLDSMERGTRPGVGR-LQFYGEVEDVLKADEMM 380
BLAST of mRNA_H-paniculata_contig1846.4544.1 vs. uniprot
Match: A0A7S2XPN7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XPN7_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 1.600e-12 Identity = 77/280 (27.50%), Postives = 128/280 (45.71%), Query Frame = 3
Query: 72 NDGPDVLKTVGAVVILLATVGGSALPFLSLAPETS------GPKTVRVVDEEGNTSE-RGSMTAMTRAEIQKKLAQVPVFFL-RDPNGGVHVDGGEGLFFMNPADAQAKIAGMTGVDGVKVSATTLDDVWYPLIKKKGQNKKSV-------AAEAAVNSDLSAR-YRIIPRVDQVSQASGTDGWNSVGDKDGVPVWAANSLAFQAGSRYKTPLFTNMDDLMTSWQRLKTEAGSKSEA-PVVQVSSIGAIVEIMESGGGDN-RNLEFFADMDSIEQAEKLL 857
+DGP + V V L+ VG S P L A + G V D G S ++R +IQ+KL +VPVF+L PN + + +++ DA + G V TTLD V YPL+ K+G+ + + A E LS + +++IP + A+ T + D D +P++ A+ LAF + + PLF D +TS+ RL+ G + A P ++ +++ + ME G L+F++ D + +A ++L
Sbjct: 94 DDGPGIGTIVTIVFFLVVFVGTSLAPMLDAARNSPTGDLNLGDSVVTRQDPPGKLKNYENSSDKLSRTKIQEKLNRVPVFYLVSGPNREM-----QEKIYLSFEDATSAAG-----SGATVKCTTLDQVMYPLVLKRGRMRMAPPPLEVQQAEETLQAQGLSTKNFKLIPSKAAIKDAAETK--TDLADGD-IPLFVADRLAFAGDAGPQVPLFFEKADCITSYDRLRESRGDRIPAQPNIRSTTLMDELYSMEKGTRPAVSQLQFYSTADDLMRASEML 360
BLAST of mRNA_H-paniculata_contig1846.4544.1 vs. uniprot
Match: A0A1E7FKF1_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKF1_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 1.170e-11 Identity = 62/215 (28.84%), Postives = 103/215 (47.91%), Query Frame = 3
Query: 240 AMTRAEIQKKLAQVPVFFLR-DPNGGVHVDGGEGLFFMNPADAQAKIAGMTGVDGVKVSATTLDDVWYPLIKKKGQNKKSVA------AEAAVNSDLSARYRIIPRVDQVSQASGTDGWNSVGD--KDGVPVWAANSLAFQAGSRYKTPLFTNMDDLMTSWQRLKTEAGSKSEAPVVQVSSIGAIVEIMESGGGDNRN-LEFFADMDSIEQAEKL 854
+++R+ IQ+KL +PVF++ N + D +++ DA AG G V TTLD V YPL+ K+G+ + + AE + S+ Y +IP + Q + VGD K +P++ A+ LAF + + PLF + D + S++RL+ S E P ++ SS+ + ME G N L F+A + + +L
Sbjct: 90 SLSRSAIQEKLNAIPVFYITTSDNNNMSTD-----IYLSYEDANNVAAG-----GSIVKGTTLDQVMYPLVLKRGRMRMAPPPSEVELAEKNLLSNNEKSYFLIPSTKAIDQYKEFN----VGDLSKSDIPLFVADRLAFASPKGPQLPLFLDKSDCIASYKRLRNGKSSLPEEPTIRTSSLLETLITMEKGTRPGVNQLAFYATEQDLTKVAEL 290 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1846.4544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1846.4544.1 >prot_H-paniculata_contig1846.4544.1 ID=prot_H-paniculata_contig1846.4544.1|Name=mRNA_H-paniculata_contig1846.4544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp MGNDGPDVLKTVGAVVILLATVGGSALPFLSLAPETSGPKTVRVVDEEGNback to top mRNA from alignment at H-paniculata_contig1846:16465..21513- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1846.4544.1 ID=mRNA_H-paniculata_contig1846.4544.1|Name=mRNA_H-paniculata_contig1846.4544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5049bp|location=Sequence derived from alignment at H-paniculata_contig1846:16465..21513- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1846:16465..21513- >mRNA_H-paniculata_contig1846.4544.1 ID=mRNA_H-paniculata_contig1846.4544.1|Name=mRNA_H-paniculata_contig1846.4544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at H-paniculata_contig1846:16465..21513- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |