mRNA_H-paniculata_contig18450.4541.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18450.4541.1 vs. uniprot
Match: D8LI31_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI31_ECTSI) HSP 1 Score: 129 bits (325), Expect = 1.490e-33 Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 1
Query: 1 DVRLTVPGRVWFTKPRRLKNGATLARVMQGNIKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 195
D RLTVPGRVWF KPRRLKNGATL RVM+GN+KEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV
Sbjct: 592 DARLTVPGRVWFAKPRRLKNGATLKRVMRGNVKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 656
BLAST of mRNA_H-paniculata_contig18450.4541.1 vs. uniprot
Match: A0A835YUE7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUE7_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.160e-20 Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 1
Query: 1 DVRLTVPGRVWFTKPRRLKNGATLARVMQGNIKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 195
D L VPG VWF KPRRL+ GAT+ + G +++D+LWQ+HD+MLTKSMLSHH L +Y+ +LDRV
Sbjct: 440 DSALIVPGTVWFVKPRRLRAGATMTKSRSGALRDDVLWQMHDVMLTKSMLSHHSLARYVAVLDRV 504
BLAST of mRNA_H-paniculata_contig18450.4541.1 vs. uniprot
Match: A0A4D9DDN3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDN3_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 2.610e-18 Identity = 35/62 (56.45%), Postives = 51/62 (82.26%), Query Frame = 1
Query: 10 LTVPGRVWFTKPRRLKNGATLARVMQGNIKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 195
L +PGRV++ KPR+L GAT+ VM+GN++ED+LW++HDI +++SML HH LDKYI +L R+
Sbjct: 526 LILPGRVYYIKPRKLHGGATIKEVMRGNLREDVLWKIHDIFVSQSMLKHHSLDKYITVLARI 587
BLAST of mRNA_H-paniculata_contig18450.4541.1 vs. uniprot
Match: A0A7S1B8E3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B8E3_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 5.000e-13 Identity = 31/65 (47.69%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 1 DVRLTVPGRVWFTKPRRLKNGATLARVMQGNIKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 195
+ R++VPG+ + KPRRL +GA++ V +GN++ ++LWQLHD+ L+ M H LD YI LDRV
Sbjct: 470 EFRMSVPGKAFVVKPRRLDHGASMYEVEEGNVRAEVLWQLHDVPLSIKMWRHGTLDSYIHGLDRV 534
BLAST of mRNA_H-paniculata_contig18450.4541.1 vs. uniprot
Match: K0SG86_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SG86_THAOC) HSP 1 Score: 65.1 bits (157), Expect = 6.220e-12 Identity = 31/69 (44.93%), Postives = 47/69 (68.12%), Query Frame = 1
Query: 1 DVRLTVPGRVWFTKPRRLKNGATLARVMQGNIKEDM----LWQLHDIMLTKSMLSHHRLDKYIKILDRV 195
D +L++PGRV+ +PRRL G++ + KE + LWQL DI+L++S+ SHHRL+ YI+ LD+V
Sbjct: 47 DEKLSLPGRVFLVRPRRLGGGSSSIHEVNDGGKESLRAAVLWQLKDILLSRSLWSHHRLEGYIETLDKV 115
BLAST of mRNA_H-paniculata_contig18450.4541.1 vs. uniprot
Match: A0A6T5V5A5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A6T5V5A5_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 2.120e-11 Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1
Query: 1 DVRLTVPGRVWFTKPRRLKNGATLARVMQ----GNIKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 195
+ +L++PG +F KPRRL +L V G I+ +LWQL DI+L+KSM HH LD YI+ LDRV
Sbjct: 475 ETKLSIPGTKYFVKPRRLGGACSLHHVGDISGTGAIRASVLWQLDDILLSKSMWDHHGLDNYIQALDRV 543
BLAST of mRNA_H-paniculata_contig18450.4541.1 vs. uniprot
Match: A0A7S2FE87_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FE87_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 5.520e-10 Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 1
Query: 1 DVRLTVPGRVWFTKPRRLKNGATLARVMQGNIKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 195
D L+ PG V+ KPR + +G I E +LWQLHDI+++KSML+HH L Y++ LD V
Sbjct: 114 DTLLSCPGVVYMLKPRA-SGQVHMVTTKRGGIGESLLWQLHDILISKSMLAHHTLPAYVRCLDVV 177
BLAST of mRNA_H-paniculata_contig18450.4541.1 vs. uniprot
Match: B7GAF2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GAF2_PHATC) HSP 1 Score: 62.0 bits (149), Expect = 1.230e-9 Identity = 29/71 (40.85%), Postives = 48/71 (67.61%), Query Frame = 1
Query: 1 DVRLTVPGRVWFTKPRRLKNGATLARV---MQGN---IKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 195
+ RL VPGR + +PRRL + ++ V ++G ++ +LWQL+D++L+KS+ HH+L+ YI+ LDRV
Sbjct: 450 EARLAVPGRAYLIRPRRLSHACSIHEVGAQLKGGREALRAAVLWQLNDVLLSKSLWKHHQLESYIQGLDRV 520
BLAST of mRNA_H-paniculata_contig18450.4541.1 vs. uniprot
Match: A0A7S2LJY6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LJY6_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.230e-9 Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1
Query: 1 DVRLTVPGRVWFTKPRRLKNGATLARVMQG------NIKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 195
D L VPGRV+ +PRR+ G++ + G N + +LWQL+D++L+KS+ HH YI+ LDRV
Sbjct: 463 DAHLAVPGRVYLIRPRRIGGGSSSIHEVGGSIGGRENFRAAVLWQLNDVLLSKSLWKHHSQSSYIRSLDRV 533
BLAST of mRNA_H-paniculata_contig18450.4541.1 vs. uniprot
Match: A0A7S3ZRK4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRK4_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 1.670e-9 Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1
Query: 1 DVRLTVPGRVWFTKPRRLKNGAT-LARVMQGNIKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 195
D L +PG V+F KPR +GA + R G +E++LWQL+D++L+KSML+H LD YI LDR+
Sbjct: 404 DDELRLPGDVFFLKPRA--DGAVGVYRGGAGRAREELLWQLNDVLLSKSMLAHATLDAYISALDRI 467 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18450.4541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18450.4541.1 >prot_H-paniculata_contig18450.4541.1 ID=prot_H-paniculata_contig18450.4541.1|Name=mRNA_H-paniculata_contig18450.4541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp DVRLTVPGRVWFTKPRRLKNGATLARVMQGNIKEDMLWQLHDIMLTKSMLback to top mRNA from alignment at H-paniculata_contig18450:934..1131- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18450.4541.1 ID=mRNA_H-paniculata_contig18450.4541.1|Name=mRNA_H-paniculata_contig18450.4541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig18450:934..1131- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18450:934..1131- >mRNA_H-paniculata_contig18450.4541.1 ID=mRNA_H-paniculata_contig18450.4541.1|Name=mRNA_H-paniculata_contig18450.4541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig18450:934..1131- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |