mRNA_H-paniculata_contig18450.4542.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18450.4542.1
Unique NamemRNA_H-paniculata_contig18450.4542.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18450.4542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18450contigH-paniculata_contig18450:3154..3691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size538
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18450.4542.1prot_H-paniculata_contig18450.4542.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18450 3323..3658 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929430.0502-UTR-H-paniculata_contig18450:3153..33221622929430.0502-UTR-H-paniculata_contig18450:3153..3322Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18450 3154..3322 +
1691480857.8834968-UTR-H-paniculata_contig18450:3153..33221691480857.8834968-UTR-H-paniculata_contig18450:3153..3322Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18450 3154..3322 +
1622929430.0829823-UTR-H-paniculata_contig18450:3658..36911622929430.0829823-UTR-H-paniculata_contig18450:3658..3691Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18450 3659..3691 +
1691480857.9029791-UTR-H-paniculata_contig18450:3658..36911691480857.9029791-UTR-H-paniculata_contig18450:3658..3691Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18450 3659..3691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929430.0662773-CDS-H-paniculata_contig18450:3322..36581622929430.0662773-CDS-H-paniculata_contig18450:3322..3658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18450 3323..3658 +
1691480857.8930857-CDS-H-paniculata_contig18450:3322..36581691480857.8930857-CDS-H-paniculata_contig18450:3322..3658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18450 3323..3658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18450.4542.1

>prot_H-paniculata_contig18450.4542.1 ID=prot_H-paniculata_contig18450.4542.1|Name=mRNA_H-paniculata_contig18450.4542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MSSQVKLFPSSQLRRIFDAEDSAIEMTYISTGYKKVFFLLKSSIYFIVLF
PNHVCTIHGYRHIVAQAWQCQTVHIATNDVAIVNATDNKQTNITARKRKI
MLDNTAPLEKG*
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mRNA from alignment at H-paniculata_contig18450:3154..3691+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18450.4542.1 ID=mRNA_H-paniculata_contig18450.4542.1|Name=mRNA_H-paniculata_contig18450.4542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=538bp|location=Sequence derived from alignment at H-paniculata_contig18450:3154..3691+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGTTTTTTCATTAGCCTTGTTACTCCCCAAAAAATATGCCATGCTTAA
AATAGATATTGTACTCATCTGCAAAATTTGAGTACGACAATTTCAGGGGA
AAAGGAGTGTTCACCGTTTGGGCGCCGTGTAGATTCAATTGTTGGCTTTG
CTGAAGTAATCACACATACATGTCAAGTCAAGTCAAGTTGTTCCCAAGCT
CTCAACTAAGAAGGATATTCGACGCCGAAGACTCAGCGATTGAAATGACA
TATATATCAACAGGGTACAAAAAAGTTTTCTTTCTGCTTAAAAGCTCTAT
TTACTTTATCGTGTTATTCCCCAATCATGTATGTACAATCCATGGATACC
GTCATATTGTAGCGCAAGCGTGGCAATGTCAGACGGTACACATCGCTACC
AATGACGTCGCTATTGTTAATGCAACCGACAACAAACAAACCAATATCAC
CGCTAGAAAAAGAAAAATCATGCTGGACAATACTGCACCCCTAGAAAAAG
GATAAACACGAATACTTGCGAATGTTTTTTACAAAAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig18450:3154..3691+

>mRNA_H-paniculata_contig18450.4542.1 ID=mRNA_H-paniculata_contig18450.4542.1|Name=mRNA_H-paniculata_contig18450.4542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig18450:3154..3691+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAAGTCAAGTCAAGTTGTTCCCAAGCTCTCAACTAAGAAGGATATT
CGACGCCGAAGACTCAGCGATTGAAATGACATATATATCAACAGGGTACA
AAAAAGTTTTCTTTCTGCTTAAAAGCTCTATTTACTTTATCGTGTTATTC
CCCAATCATGTATGTACAATCCATGGATACCGTCATATTGTAGCGCAAGC
GTGGCAATGTCAGACGGTACACATCGCTACCAATGACGTCGCTATTGTTA
ATGCAACCGACAACAAACAAACCAATATCACCGCTAGAAAAAGAAAAATC
ATGCTGGACAATACTGCACCCCTAGAAAAAGGATAAATGTCAAGTCAAGT
CAAGTTGTTCCCAAGCTCTCAACTAAGAAGGATATTCGACGCCGAAGACT
CAGCGATTGAAATGACATATATATCAACAGGGTACAAAAAAGTTTTCTTT
CTGCTTAAAAGCTCTATTTACTTTATCGTGTTATTCCCCAATCATGTATG
TACAATCCATGGATACCGTCATATTGTAGCGCAAGCGTGGCAATGTCAGA
CGGTACACATCGCTACCAATGACGTCGCTATTGTTAATGCAACCGACAAC
AAACAAACCAATATCACCGCTAGAAAAAGAAAAATCATGCTGGACAATAC
TGCACCCCTAGAAAAAGGATAA
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