mRNA_H-paniculata_contig18447.4537.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18447.4537.1
Unique NamemRNA_H-paniculata_contig18447.4537.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18447.4537.1 vs. uniprot
Match: D7FNB2_ECTSI (SSD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNB2_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 4.520e-22
Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 1
Query:   34 RQERAEAAMKSAGASVLTGITLTKLVGVSVLAIAPSLLFRVYYFRMYMATVLAGAF 201
            RQERAEAAMKSAGASVLTGITLTKLVGVSVLAIAPSLLFRVYYFRMYMATV  GAF
Sbjct: 1267 RQERAEAAMKSAGASVLTGITLTKLVGVSVLAIAPSLLFRVYYFRMYMATVAVGAF 1322          
BLAST of mRNA_H-paniculata_contig18447.4537.1 vs. uniprot
Match: A0A4D9CZ93_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ93_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 5.180e-13
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   34 RQERAEAAMKSAGASVLTGITLTKLVGVSVLAIAPSLLFRVYYFRMYMATVLAGAF 201
            R++RA  A+ S GASVL GITLTKLVG++VLA+APS LFRVYYFRMY+  +  GAF
Sbjct:  383 REKRAWHALSSMGASVLCGITLTKLVGIAVLAVAPSHLFRVYYFRMYVCLICVGAF 438          
BLAST of mRNA_H-paniculata_contig18447.4537.1 vs. uniprot
Match: A0A7R9Z1D3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z1D3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.290e-12
Identity = 34/56 (60.71%), Postives = 45/56 (80.36%), Query Frame = 1
Query:   34 RQERAEAAMKSAGASVLTGITLTKLVGVSVLAIAPSLLFRVYYFRMYMATVLAGAF 201
            R +RA+AA+   G++V+TGIT TK VGV VLA APS LFR+YYFRMY+  +++GAF
Sbjct:   23 RNDRAKAAVTEMGSAVITGITCTKFVGVLVLAWAPSHLFRLYYFRMYVGIIVSGAF 78          
BLAST of mRNA_H-paniculata_contig18447.4537.1 vs. uniprot
Match: K8YSC8_NANGC (Niemann-Pick C1 protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSC8_NANGC)

HSP 1 Score: 69.3 bits (168), Expect = 3.420e-12
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   34 RQERAEAAMKSAGASVLTGITLTKLVGVSVLAIAPSLLFRVYYFRMYMATVLAGAF 201
            R++RA  A+ S GASVL GITLTK VG++VLA+APS LFRVYYFRMY++ +  GAF
Sbjct:  607 REKRAWHALSSMGASVLCGITLTKFVGIAVLAVAPSHLFRVYYFRMYVSLIGVGAF 662          
BLAST of mRNA_H-paniculata_contig18447.4537.1 vs. uniprot
Match: W7TJL6_9STRA (Patched family protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJL6_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.430e-12
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   34 RQERAEAAMKSAGASVLTGITLTKLVGVSVLAIAPSLLFRVYYFRMYMATVLAGAF 201
            R++RA  A+ S GASVL GITLTK VG++VLA+APS LFRVYYFRMY++ +  GAF
Sbjct:  651 REKRAWHALSSMGASVLCGITLTKFVGIAVLAVAPSHLFRVYYFRMYVSLIGVGAF 706          
BLAST of mRNA_H-paniculata_contig18447.4537.1 vs. uniprot
Match: A0A150GTL6_GONPE (SSD domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GTL6_GONPE)

HSP 1 Score: 67.8 bits (164), Expect = 1.180e-11
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 1
Query:   25 YCCRQERAEAAMKSAGASVLTGITLTKLVGVSVLAIAPSLLFRVYYFRMYMATVLAGA 198
            Y  R  RA AA++S GASVL+G+TLTKLVGV+VLA A + +F VYYFR+Y A V+AGA
Sbjct:  483 YARRCARAAAALRSVGASVLSGVTLTKLVGVAVLAFARTQIFEVYYFRLYAALVVAGA 540          
BLAST of mRNA_H-paniculata_contig18447.4537.1 vs. uniprot
Match: A0A835YXX1_9STRA (SSD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX1_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.210e-11
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   34 RQERAEAAMKSAGASVLTGITLTKLVGVSVLAIAPSLLFRVYYFRMYMATVLAGAF 201
            R+ERA  A++  G SV  GITLTKLVGV VLA APS LFR+YYFR YM+ V  GAF
Sbjct: 1179 REERAARALRGTGRSVFFGITLTKLVGVFVLAFAPSQLFRLYYFRQYMSIVAVGAF 1234          
BLAST of mRNA_H-paniculata_contig18447.4537.1 vs. uniprot
Match: A0A5A8C2S7_CAFRO (SSD domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C2S7_CAFRO)

HSP 1 Score: 67.4 bits (163), Expect = 1.650e-11
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 1
Query:   34 RQERAEAAMKSAGASVLTGITLTKLVGVSVLAIAPSLLFRVYYFRMYMATVLAGAF 201
            R  RA  A+   G++V+TGITLTKLVGV VLA APS +FR+YYFRMY+A ++AGAF
Sbjct: 1185 RLVRARKALAEMGSNVVTGITLTKLVGVLVLAWAPSQMFRLYYFRMYLAIIIAGAF 1240          
BLAST of mRNA_H-paniculata_contig18447.4537.1 vs. uniprot
Match: A0A5A8DI96_CAFRO (SSD domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DI96_CAFRO)

HSP 1 Score: 67.4 bits (163), Expect = 1.660e-11
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 1
Query:   34 RQERAEAAMKSAGASVLTGITLTKLVGVSVLAIAPSLLFRVYYFRMYMATVLAGAF 201
            R  RA  A+   G++V+TGITLTKLVGV VLA APS +FR+YYFRMY+A ++AGAF
Sbjct: 1977 RLVRARKALAEMGSNVVTGITLTKLVGVLVLAWAPSQMFRLYYFRMYLAIIIAGAF 2032          
BLAST of mRNA_H-paniculata_contig18447.4537.1 vs. uniprot
Match: A0A507DED8_9FUNG (SSD domain-containing protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DED8_9FUNG)

HSP 1 Score: 67.0 bits (162), Expect = 2.250e-11
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   34 RQERAEAAMKSAGASVLTGITLTKLVGVSVLAIAPSLLFRVYYFRMYMATVLAGAF 201
            + ERA  A+   G+SV +GITLTK VGVSVLA APS  F VYYFRMY+A VL GAF
Sbjct: 1175 KNERAFKALVEMGSSVFSGITLTKFVGVSVLAFAPSKFFEVYYFRMYLAIVLLGAF 1230          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18447.4537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNB2_ECTSI4.520e-2296.43SSD domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A4D9CZ93_9STRA5.180e-1367.86Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7R9Z1D3_9STRA3.290e-1260.71Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
K8YSC8_NANGC3.420e-1266.07Niemann-Pick C1 protein n=1 Tax=Nannochloropsis ga... [more]
W7TJL6_9STRA3.430e-1266.07Patched family protein (Fragment) n=1 Tax=Nannochl... [more]
A0A150GTL6_GONPE1.180e-1163.79SSD domain-containing protein n=1 Tax=Gonium pecto... [more]
A0A835YXX1_9STRA1.210e-1166.07SSD domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A5A8C2S7_CAFRO1.650e-1164.29SSD domain-containing protein n=3 Tax=Cafeteria ro... [more]
A0A5A8DI96_CAFRO1.660e-1164.29SSD domain-containing protein n=2 Tax=Cafeteria ro... [more]
A0A507DED8_9FUNG2.250e-1166.07SSD domain-containing protein n=2 Tax=Synchytrium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18447contigH-paniculata_contig18447:4745..4945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue4.5e-18
Seed eggNOG ortholog2880.D7FNB2
KEGG koko:K12385
KEGG TC2.A.6.6
KEGG Pathwayko04142,ko04979,map04142,map04979
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular response to sterol depletion
EggNOG OGsKOG1933@1,KOG1933@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size201
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929429.676083-CDS-H-paniculata_contig18447:4744..49451622929429.676083-CDS-H-paniculata_contig18447:4744..4945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18447 4745..4945 +
1691480857.6736243-CDS-H-paniculata_contig18447:4744..49451691480857.6736243-CDS-H-paniculata_contig18447:4744..4945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18447 4745..4945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18447.4537.1prot_H-paniculata_contig18447.4537.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18447 4745..4945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18447.4537.1

>prot_H-paniculata_contig18447.4537.1 ID=prot_H-paniculata_contig18447.4537.1|Name=mRNA_H-paniculata_contig18447.4537.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MYWPADLLYCCRQERAEAAMKSAGASVLTGITLTKLVGVSVLAIAPSLLF
RVYYFRMYMATVLAGAF
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mRNA from alignment at H-paniculata_contig18447:4745..4945+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18447.4537.1 ID=mRNA_H-paniculata_contig18447.4537.1|Name=mRNA_H-paniculata_contig18447.4537.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig18447:4745..4945+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACTGGCCTGCCGACCTGTTGTACTGCTGTAGGCAAGAGCGTGCTGA GGCGGCGATGAAAAGCGCAGGCGCTTCCGTGCTGACTGGCATCACCTTGA CCAAGCTTGTCGGGGTTAGCGTGCTTGCAATTGCCCCGTCACTCCTGTTC CGCGTCTACTACTTCCGAATGTACATGGCCACAGTGTTGGCAGGCGCTTT C
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Coding sequence (CDS) from alignment at H-paniculata_contig18447:4745..4945+

>mRNA_H-paniculata_contig18447.4537.1 ID=mRNA_H-paniculata_contig18447.4537.1|Name=mRNA_H-paniculata_contig18447.4537.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig18447:4745..4945+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACTGGCCTGCCGACCTGTTGTACTGCTGTAGGCAAGAGCGTGCTGA
GGCGGCGATGAAAAGCGCAGGCGCTTCCGTGCTGACTGGCATCACCTTGA
CCAAGCTTGTCGGGGTTAGCGTGCTTGCAATTGCCCCGTCACTCCTGTTC
CGCGTCTACTACTTCCGAATGTACATGGCCACAGTGTTGGCAGGCGCTTT
CATGTACTGGCCTGCCGACCTGTTGTACTGCTGTAGGCAAGAGCGTGCTG
AGGCGGCGATGAAAAGCGCAGGCGCTTCCGTGCTGACTGGCATCACCTTG
ACCAAGCTTGTCGGGGTTAGCGTGCTTGCAATTGCCCCGTCACTCCTGTT
CCGCGTCTACTACTTCCGAATGTACATGGCCACAGTGTTGGCAGGCGCTT
TC
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