mRNA_H-paniculata_contig18444.4536.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Match: A0A8H8JVA7_9AGAM (Pol polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JVA7_9AGAM) HSP 1 Score: 73.2 bits (178), Expect = 2.300e-13 Identity = 31/76 (40.79%), Postives = 51/76 (67.11%), Query Frame = 1
Query: 1 TTEPLELVHTNIAGPVDKSFGGCRFPIIFVDDYSRMCKACTSRQKSEALWALKQVERDVARANGLRIKRLRLDRGG 228
T++PLEL+H+++ GP+D S GG R+ ++FVDDY+RM C + K + A +++ + ++G R+K LR D GG
Sbjct: 139 TSQPLELLHSDVCGPLDASIGGVRYVLLFVDDYTRMAWVCLLKTKDQVFEAFRRLRAHLELSSGHRVKTLRTDGGG 214
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Match: A0A8H8MSC5_9AGAM (Pol polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8MSC5_9AGAM) HSP 1 Score: 69.7 bits (169), Expect = 3.840e-12 Identity = 30/76 (39.47%), Postives = 50/76 (65.79%), Query Frame = 1
Query: 1 TTEPLELVHTNIAGPVDKSFGGCRFPIIFVDDYSRMCKACTSRQKSEALWALKQVERDVARANGLRIKRLRLDRGG 228
T++PLEL+H+++ GP+D S GG R+ + FVDDY+RM C + K + A ++ + + ++G R+K L+ D GG
Sbjct: 613 TSQPLELLHSDVCGPLDASIGGVRYVLSFVDDYTRMAWVCLLKTKDQVFEAFRRPQAHLELSSGHRVKTLQTDGGG 688
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Match: A0A6N2K750_SALVM (Integrase catalytic domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2K750_SALVM) HSP 1 Score: 67.0 bits (162), Expect = 3.380e-11 Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 10 PLELVHTNIAGPVD-KSFGGCRFPIIFVDDYSRMCKACTSRQKSEALWALKQVERDVARANGLRIKRLRLDRGG 228
PL+LVHT++ GP+ +S GG R+ I F+DDYSR+C R KS AL K+ + V +G ++K++R DRGG
Sbjct: 44 PLQLVHTDLCGPMQHESNGGNRYFITFIDDYSRVCWVYFLRNKSNALTVFKKYKALVELQSGFKVKKMRSDRGG 117
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Match: A0A4Y1REW6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REW6_PRUDU) HSP 1 Score: 66.6 bits (161), Expect = 4.620e-11 Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1
Query: 10 PLELVHTNIAGPV-DKSFGGCRFPIIFVDDYSRMCKACTSRQKSEALWALKQVERDVARANGLRIKRLRLDRGG 228
PLEL+HT++ GP+ ++S GG ++ I F+DDYSRMC R KS + K+ + V +G +K+LR DRGG
Sbjct: 432 PLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFKVFVELQSGFNLKKLRSDRGG 505
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Match: A0A4Y1R3A1_PRUDU (BURP domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R3A1_PRUDU) HSP 1 Score: 66.6 bits (161), Expect = 4.630e-11 Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1
Query: 10 PLELVHTNIAGPV-DKSFGGCRFPIIFVDDYSRMCKACTSRQKSEALWALKQVERDVARANGLRIKRLRLDRGG 228
PLEL+HT++ GP+ ++S GG ++ I F+DDYSRMC R KS + K+ + V +G +K+LR DRGG
Sbjct: 124 PLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFKVFVELQSGFNLKKLRSDRGG 197
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Match: UPI0007191E71 (uncharacterized protein LOC106797953 n=2 Tax=Glycine subgen. Soja TaxID=1462606 RepID=UPI0007191E71) HSP 1 Score: 66.2 bits (160), Expect = 6.270e-11 Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1
Query: 4 TEPLELVHTNIAGPVD-KSFGGCRFPIIFVDDYSRMCKACTSRQKSEALWALKQVERDVARANGLRIKRLRLDRGG 228
T+PLEL+HTN+ GP+ SFG ++ ++F+DDYSR ++KSE K+ + V + +GL IK +R DRGG
Sbjct: 421 TKPLELIHTNVCGPIKPNSFGKNKYFLLFIDDYSRKAWVYFLKEKSEVFENFKKFKALVEKESGLSIKAMRSDRGG 496
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Match: A0A445G8E4_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445G8E4_GLYSO) HSP 1 Score: 66.2 bits (160), Expect = 6.380e-11 Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1
Query: 4 TEPLELVHTNIAGPVD-KSFGGCRFPIIFVDDYSRMCKACTSRQKSEALWALKQVERDVARANGLRIKRLRLDRGG 228
T+PLEL+HTN+ GP+ SFG ++ ++F+DDYSR ++KSE K+ + V + +GL IK +R DRGG
Sbjct: 482 TKPLELIHTNVCGPIKPNSFGKNKYFLLFIDDYSRKAWVYFLKEKSEVFENFKKFKALVEKESGLSIKAMRSDRGG 557
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY) HSP 1 Score: 66.2 bits (160), Expect = 6.410e-11 Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 10 PLELVHTNIAGPVD-KSFGGCRFPIIFVDDYSRMCKACTSRQKSEALWALKQVERDVARANGLRIKRLRLDRGG 228
PLE+VHT+IAGP D S GG R+ + F+DD+SR C ++KSEAL L++ + + +G +K LR DRGG
Sbjct: 1310 PLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGG 1383
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Match: A0A6A3BY51_HIBSY (Histone acetyltransferase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BY51_HIBSY) HSP 1 Score: 66.2 bits (160), Expect = 6.420e-11 Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 10 PLELVHTNIAGPVD-KSFGGCRFPIIFVDDYSRMCKACTSRQKSEALWALKQVERDVARANGLRIKRLRLDRGG 228
PLE+VHT+IAGP D S GG R+ + F+DD+SR C ++KSEAL L++ + + +G +K LR DRGG
Sbjct: 388 PLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGG 461
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Match: A0A8H8NE85_9AGAM (Pol polyprotein/retrotransposon n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8NE85_9AGAM) HSP 1 Score: 65.9 bits (159), Expect = 8.670e-11 Identity = 30/76 (39.47%), Postives = 48/76 (63.16%), Query Frame = 1
Query: 1 TTEPLELVHTNIAGPVDKSFGGCRFPIIFVDDYSRMCKACTSRQKSEALWALKQVERDVARANGLRIKRLRLDRGG 228
T+EPL++VH+++ GP+D S GG R+ + +DD+SRM C + K + A K+ + ++G R+K LR D GG
Sbjct: 629 TSEPLQVVHSDLCGPLDASVGGSRYVLSLIDDFSRMAWICVLKTKDQVFEAFKRWCAYIELSSGHRVKTLRTDGGG 704 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18444.4536.1 >prot_H-paniculata_contig18444.4536.1 ID=prot_H-paniculata_contig18444.4536.1|Name=mRNA_H-paniculata_contig18444.4536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp TTEPLELVHTNIAGPVDKSFGGCRFPIIFVDDYSRMCKACTSRQKSEALWback to top mRNA from alignment at H-paniculata_contig18444:4926..5156+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18444.4536.1 ID=mRNA_H-paniculata_contig18444.4536.1|Name=mRNA_H-paniculata_contig18444.4536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig18444:4926..5156+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18444:4926..5156+ >mRNA_H-paniculata_contig18444.4536.1 ID=mRNA_H-paniculata_contig18444.4536.1|Name=mRNA_H-paniculata_contig18444.4536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig18444:4926..5156+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |