mRNA_H-paniculata_contig18444.4536.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18444.4536.1
Unique NamemRNA_H-paniculata_contig18444.4536.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Match: A0A8H8JVA7_9AGAM (Pol polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JVA7_9AGAM)

HSP 1 Score: 73.2 bits (178), Expect = 2.300e-13
Identity = 31/76 (40.79%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    1 TTEPLELVHTNIAGPVDKSFGGCRFPIIFVDDYSRMCKACTSRQKSEALWALKQVERDVARANGLRIKRLRLDRGG 228
            T++PLEL+H+++ GP+D S GG R+ ++FVDDY+RM   C  + K +   A +++   +  ++G R+K LR D GG
Sbjct:  139 TSQPLELLHSDVCGPLDASIGGVRYVLLFVDDYTRMAWVCLLKTKDQVFEAFRRLRAHLELSSGHRVKTLRTDGGG 214          
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Match: A0A8H8MSC5_9AGAM (Pol polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8MSC5_9AGAM)

HSP 1 Score: 69.7 bits (169), Expect = 3.840e-12
Identity = 30/76 (39.47%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    1 TTEPLELVHTNIAGPVDKSFGGCRFPIIFVDDYSRMCKACTSRQKSEALWALKQVERDVARANGLRIKRLRLDRGG 228
            T++PLEL+H+++ GP+D S GG R+ + FVDDY+RM   C  + K +   A ++ +  +  ++G R+K L+ D GG
Sbjct:  613 TSQPLELLHSDVCGPLDASIGGVRYVLSFVDDYTRMAWVCLLKTKDQVFEAFRRPQAHLELSSGHRVKTLQTDGGG 688          
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Match: A0A6N2K750_SALVM (Integrase catalytic domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2K750_SALVM)

HSP 1 Score: 67.0 bits (162), Expect = 3.380e-11
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   10 PLELVHTNIAGPVD-KSFGGCRFPIIFVDDYSRMCKACTSRQKSEALWALKQVERDVARANGLRIKRLRLDRGG 228
            PL+LVHT++ GP+  +S GG R+ I F+DDYSR+C     R KS AL   K+ +  V   +G ++K++R DRGG
Sbjct:   44 PLQLVHTDLCGPMQHESNGGNRYFITFIDDYSRVCWVYFLRNKSNALTVFKKYKALVELQSGFKVKKMRSDRGG 117          
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Match: A0A4Y1REW6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REW6_PRUDU)

HSP 1 Score: 66.6 bits (161), Expect = 4.620e-11
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   10 PLELVHTNIAGPV-DKSFGGCRFPIIFVDDYSRMCKACTSRQKSEALWALKQVERDVARANGLRIKRLRLDRGG 228
            PLEL+HT++ GP+ ++S GG ++ I F+DDYSRMC     R KS  +   K+ +  V   +G  +K+LR DRGG
Sbjct:  432 PLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFKVFVELQSGFNLKKLRSDRGG 505          
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Match: A0A4Y1R3A1_PRUDU (BURP domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R3A1_PRUDU)

HSP 1 Score: 66.6 bits (161), Expect = 4.630e-11
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   10 PLELVHTNIAGPV-DKSFGGCRFPIIFVDDYSRMCKACTSRQKSEALWALKQVERDVARANGLRIKRLRLDRGG 228
            PLEL+HT++ GP+ ++S GG ++ I F+DDYSRMC     R KS  +   K+ +  V   +G  +K+LR DRGG
Sbjct:  124 PLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFKVFVELQSGFNLKKLRSDRGG 197          
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Match: UPI0007191E71 (uncharacterized protein LOC106797953 n=2 Tax=Glycine subgen. Soja TaxID=1462606 RepID=UPI0007191E71)

HSP 1 Score: 66.2 bits (160), Expect = 6.270e-11
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    4 TEPLELVHTNIAGPVD-KSFGGCRFPIIFVDDYSRMCKACTSRQKSEALWALKQVERDVARANGLRIKRLRLDRGG 228
            T+PLEL+HTN+ GP+   SFG  ++ ++F+DDYSR       ++KSE     K+ +  V + +GL IK +R DRGG
Sbjct:  421 TKPLELIHTNVCGPIKPNSFGKNKYFLLFIDDYSRKAWVYFLKEKSEVFENFKKFKALVEKESGLSIKAMRSDRGG 496          
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Match: A0A445G8E4_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445G8E4_GLYSO)

HSP 1 Score: 66.2 bits (160), Expect = 6.380e-11
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    4 TEPLELVHTNIAGPVD-KSFGGCRFPIIFVDDYSRMCKACTSRQKSEALWALKQVERDVARANGLRIKRLRLDRGG 228
            T+PLEL+HTN+ GP+   SFG  ++ ++F+DDYSR       ++KSE     K+ +  V + +GL IK +R DRGG
Sbjct:  482 TKPLELIHTNVCGPIKPNSFGKNKYFLLFIDDYSRKAWVYFLKEKSEVFENFKKFKALVEKESGLSIKAMRSDRGG 557          
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY)

HSP 1 Score: 66.2 bits (160), Expect = 6.410e-11
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   10 PLELVHTNIAGPVD-KSFGGCRFPIIFVDDYSRMCKACTSRQKSEALWALKQVERDVARANGLRIKRLRLDRGG 228
            PLE+VHT+IAGP D  S GG R+ + F+DD+SR C     ++KSEAL  L++ +    + +G  +K LR DRGG
Sbjct: 1310 PLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGG 1383          
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Match: A0A6A3BY51_HIBSY (Histone acetyltransferase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BY51_HIBSY)

HSP 1 Score: 66.2 bits (160), Expect = 6.420e-11
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   10 PLELVHTNIAGPVD-KSFGGCRFPIIFVDDYSRMCKACTSRQKSEALWALKQVERDVARANGLRIKRLRLDRGG 228
            PLE+VHT+IAGP D  S GG R+ + F+DD+SR C     ++KSEAL  L++ +    + +G  +K LR DRGG
Sbjct:  388 PLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGG 461          
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Match: A0A8H8NE85_9AGAM (Pol polyprotein/retrotransposon n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8NE85_9AGAM)

HSP 1 Score: 65.9 bits (159), Expect = 8.670e-11
Identity = 30/76 (39.47%), Postives = 48/76 (63.16%), Query Frame = 1
Query:    1 TTEPLELVHTNIAGPVDKSFGGCRFPIIFVDDYSRMCKACTSRQKSEALWALKQVERDVARANGLRIKRLRLDRGG 228
            T+EPL++VH+++ GP+D S GG R+ +  +DD+SRM   C  + K +   A K+    +  ++G R+K LR D GG
Sbjct:  629 TSEPLQVVHSDLCGPLDASVGGSRYVLSLIDDFSRMAWICVLKTKDQVFEAFKRWCAYIELSSGHRVKTLRTDGGG 704          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18444.4536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H8JVA7_9AGAM2.300e-1340.79Pol polyprotein/retrotransposon n=1 Tax=Ceratobasi... [more]
A0A8H8MSC5_9AGAM3.840e-1239.47Pol polyprotein/retrotransposon n=1 Tax=Ceratobasi... [more]
A0A6N2K750_SALVM3.380e-1145.95Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y1REW6_PRUDU4.620e-1144.59Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A4Y1R3A1_PRUDU4.630e-1144.59BURP domain-containing protein n=1 Tax=Prunus dulc... [more]
UPI0007191E716.270e-1143.42uncharacterized protein LOC106797953 n=2 Tax=Glyci... [more]
A0A445G8E4_GLYSO6.380e-1143.42Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A2WXP0_HIBSY6.410e-1147.30Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=10... [more]
A0A6A3BY51_HIBSY6.420e-1147.30Histone acetyltransferase n=2 Tax=Hibiscus syriacu... [more]
A0A8H8NE85_9AGAM8.670e-1139.47Pol polyprotein/retrotransposon n=2 Tax=Ceratobasi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18444contigH-paniculata_contig18444:4926..5156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue2.4e-07
Seed eggNOG ortholog67593.Physo140614
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929429.6387713-CDS-H-paniculata_contig18444:4925..51561622929429.6387713-CDS-H-paniculata_contig18444:4925..5156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18444 4926..5156 +
1691480857.661858-CDS-H-paniculata_contig18444:4925..51561691480857.661858-CDS-H-paniculata_contig18444:4925..5156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18444 4926..5156 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18444.4536.1prot_H-paniculata_contig18444.4536.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18444 4926..5156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18444.4536.1

>prot_H-paniculata_contig18444.4536.1 ID=prot_H-paniculata_contig18444.4536.1|Name=mRNA_H-paniculata_contig18444.4536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
TTEPLELVHTNIAGPVDKSFGGCRFPIIFVDDYSRMCKACTSRQKSEALW
ALKQVERDVARANGLRIKRLRLDRGG*
back to top

mRNA from alignment at H-paniculata_contig18444:4926..5156+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18444.4536.1 ID=mRNA_H-paniculata_contig18444.4536.1|Name=mRNA_H-paniculata_contig18444.4536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig18444:4926..5156+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGACCGAGCCGTTGGAGCTGGTGCACACCAACATAGCCGGACCAGTGGA CAAGTCCTTCGGAGGTTGTCGCTTCCCCATCATCTTCGTGGACGACTACA GCAGAATGTGCAAAGCCTGTACCTCGCGACAAAAGTCGGAGGCACTGTGG GCCCTGAAGCAAGTCGAGAGGGATGTAGCGAGGGCAAACGGTTTGCGGAT TAAGCGCCTTCGGTTGGATCGGGGAGGATAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig18444:4926..5156+

>mRNA_H-paniculata_contig18444.4536.1 ID=mRNA_H-paniculata_contig18444.4536.1|Name=mRNA_H-paniculata_contig18444.4536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig18444:4926..5156+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGACCGAGCCGTTGGAGCTGGTGCACACCAACATAGCCGGACCAGTGGA
CAAGTCCTTCGGAGGTTGTCGCTTCCCCATCATCTTCGTGGACGACTACA
GCAGAATGTGCAAAGCCTGTACCTCGCGACAAAAGTCGGAGGCACTGTGG
GCCCTGAAGCAAGTCGAGAGGGATGTAGCGAGGGCAAACGGTTTGCGGAT
TAAGCGCCTTCGGTTGGATCGGGGAGGATAAACGACCGAGCCGTTGGAGC
TGGTGCACACCAACATAGCCGGACCAGTGGACAAGTCCTTCGGAGGTTGT
CGCTTCCCCATCATCTTCGTGGACGACTACAGCAGAATGTGCAAAGCCTG
TACCTCGCGACAAAAGTCGGAGGCACTGTGGGCCCTGAAGCAAGTCGAGA
GGGATGTAGCGAGGGCAAACGGTTTGCGGATTAAGCGCCTTCGGTTGGAT
CGGGGAGGATAA
back to top