mRNA_H-paniculata_contig1844.4535.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1844.4535.1
Unique NamemRNA_H-paniculata_contig1844.4535.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1844.4535.1 vs. uniprot
Match: D7G0U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U4_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 8.650e-21
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 SRRSRPVMARLGVPLVEGDLIVKDQAWATPPEDGRHYHQMVPMEVFTLLGRLTSPY 168
            +RRSRPVM+RLGVP VEGDLIVKDQ WATP  DGRHYH +VP+EV+  LG L SPY
Sbjct:  441 NRRSRPVMSRLGVPFVEGDLIVKDQEWATPKSDGRHYHMLVPVEVWEFLGVLISPY 496
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BLAST of mRNA_H-paniculata_contig1844.4535.1 vs. uniprot
Match: D7FJP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP0_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.140e-13
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 SRRSRPVMARLGVPLVEGDLIVKDQAWATPPEDGRHYHQMVPMEVFTLLGRLTSP 165
            SRR+RPVM+RLGVPLV+   IV+ Q WA+ P DGRH+H++VP+EV  LL  L +P
Sbjct:  235 SRRARPVMSRLGVPLVDAARIVEGQGWASNPSDGRHFHKIVPIEVVDLLSVLGAP 289
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BLAST of mRNA_H-paniculata_contig1844.4535.1 vs. uniprot
Match: D7FKK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK8_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 4.830e-12
Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 SRRSRPVMARLGVPLVEGDLIVKDQAWATPPEDGRHYHQMVPME 132
            SRR+RPVM+RLGVP+V+   IV+ Q WA+P  DGRH+H++VP+E
Sbjct:   98 SRRARPVMSRLGVPVVDAAKIVEGQGWASPANDGRHFHKLVPIE 141
[Close]
BLAST of mRNA_H-paniculata_contig1844.4535.1 vs. uniprot
Match: D7FJN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN9_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 4.970e-11
Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 SRRSRPVMARLGVPLVEGDLIVKDQAWATPPEDGRHYHQMVPME 132
            SRR+RPVM+RLGVP+V+   IV+ Q WA+P  DGRH+H++VP+E
Sbjct:  314 SRRARPVMSRLGVPVVDAAKIVEGQGWASPANDGRHFHKLVPIE 357
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1844.4535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G0U4_ECTSI8.650e-2175.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJP0_ECTSI1.140e-1360.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKK8_ECTSI4.830e-1261.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJN9_ECTSI4.970e-1161.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1844contigH-paniculata_contig1844:23855..24031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size156
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929429.595977-CDS-H-paniculata_contig1844:23854..240101622929429.595977-CDS-H-paniculata_contig1844:23854..24010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1844 23855..24010 -
1691480857.6407387-CDS-H-paniculata_contig1844:23854..240101691480857.6407387-CDS-H-paniculata_contig1844:23854..24010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1844 23855..24010 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929429.605867-UTR-H-paniculata_contig1844:24010..240311622929429.605867-UTR-H-paniculata_contig1844:24010..24031Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1844 24011..24031 -
1691480857.6519272-UTR-H-paniculata_contig1844:24010..240311691480857.6519272-UTR-H-paniculata_contig1844:24010..24031Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1844 24011..24031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1844.4535.1prot_H-paniculata_contig1844.4535.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1844 23855..24010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1844.4535.1

>prot_H-paniculata_contig1844.4535.1 ID=prot_H-paniculata_contig1844.4535.1|Name=mRNA_H-paniculata_contig1844.4535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
MARLGVPLVEGDLIVKDQAWATPPEDGRHYHQMVPMEVFTLLGRLTSPYG
I*
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mRNA from alignment at H-paniculata_contig1844:23855..24031-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1844.4535.1 ID=mRNA_H-paniculata_contig1844.4535.1|Name=mRNA_H-paniculata_contig1844.4535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig1844:23855..24031- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTAGGCGATCTAGACCAGTAATGGCTAGGTTGGGAGTTCCGCTTGTGGA
GGGTGATCTTATCGTTAAGGACCAAGCTTGGGCAACACCTCCCGAAGACG
GTCGACATTACCACCAAATGGTGCCGATGGAGGTTTTTACCTTACTCGGG
CGCCTCACGTCTCCATACGGAATATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1844:23855..24031-

>mRNA_H-paniculata_contig1844.4535.1 ID=mRNA_H-paniculata_contig1844.4535.1|Name=mRNA_H-paniculata_contig1844.4535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig1844:23855..24031- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTAGGTTGGGAGTTCCGCTTGTGGAGGGTGATCTTATCGTTAAGGA
CCAAGCTTGGGCAACACCTCCCGAAGACGGTCGACATTACCACCAAATGG
TGCCGATGGAGGTTTTTACCTTACTCGGGCGCCTCACGTCTCCATACGGA
ATATAGATGGCTAGGTTGGGAGTTCCGCTTGTGGAGGGTGATCTTATCGT
TAAGGACCAAGCTTGGGCAACACCTCCCGAAGACGGTCGACATTACCACC
AAATGGTGCCGATGGAGGTTTTTACCTTACTCGGGCGCCTCACGTCTCCA
TACGGAATATAG
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