mRNA_H-paniculata_contig1844.4534.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1844.4534.1
Unique NamemRNA_H-paniculata_contig1844.4534.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1844.4534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1844contigH-paniculata_contig1844:2669..6182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_002920.1
Exons5
Model size1392
Cds size903
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1844.4534.1prot_H-paniculata_contig1844.4534.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1844 3158..6182 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929429.4633162-UTR-H-paniculata_contig1844:2668..31571622929429.4633162-UTR-H-paniculata_contig1844:2668..3157Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1844 2669..3157 -
1691480857.5877192-UTR-H-paniculata_contig1844:2668..31571691480857.5877192-UTR-H-paniculata_contig1844:2668..3157Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1844 2669..3157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929429.5112813-CDS-H-paniculata_contig1844:3157..33271622929429.5112813-CDS-H-paniculata_contig1844:3157..3327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1844 3158..3327 -
1691480857.5988865-CDS-H-paniculata_contig1844:3157..33271691480857.5988865-CDS-H-paniculata_contig1844:3157..3327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1844 3158..3327 -
1622929429.5280204-CDS-H-paniculata_contig1844:3775..38321622929429.5280204-CDS-H-paniculata_contig1844:3775..3832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1844 3776..3832 -
1691480857.6075432-CDS-H-paniculata_contig1844:3775..38321691480857.6075432-CDS-H-paniculata_contig1844:3775..3832Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1844 3776..3832 -
1622929429.539149-CDS-H-paniculata_contig1844:4647..49041622929429.539149-CDS-H-paniculata_contig1844:4647..4904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1844 4648..4904 -
1691480857.6156437-CDS-H-paniculata_contig1844:4647..49041691480857.6156437-CDS-H-paniculata_contig1844:4647..4904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1844 4648..4904 -
1622929429.5510669-CDS-H-paniculata_contig1844:5501..57601622929429.5510669-CDS-H-paniculata_contig1844:5501..5760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1844 5502..5760 -
1691480857.623653-CDS-H-paniculata_contig1844:5501..57601691480857.623653-CDS-H-paniculata_contig1844:5501..5760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1844 5502..5760 -
1622929429.5642366-CDS-H-paniculata_contig1844:6022..61821622929429.5642366-CDS-H-paniculata_contig1844:6022..6182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1844 6023..6182 -
1691480857.6313846-CDS-H-paniculata_contig1844:6022..61821691480857.6313846-CDS-H-paniculata_contig1844:6022..6182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1844 6023..6182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1844.4534.1

>prot_H-paniculata_contig1844.4534.1 ID=prot_H-paniculata_contig1844.4534.1|Name=mRNA_H-paniculata_contig1844.4534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=301bp
GLAIAAIANRGVKAQTLCEIFDAAEISGRTDATALFDEVNELSFACADNE
FFLGFDLNRHTVSGTIQSLRFSCTDGEVSKRFGGSDEFGESSQVFDVGIF
SIESKEVEHESYPYIGRLYVKGYDLTLANGLVEKPWGPYGVEAGENYTDT
ALSTDCQSTGLEAFATGVTVWASEKFVYGIRFACAEVTATCYPPSYPDPP
TPAPSDPLYFPQLTPAPTEATAGVISIDTKAPMAALTETKEEASGSRWFD
AAWEVAVTVLGALVTGAAAMLLRSCWGNPLRCCKRPVLNDTPSKRDISLA
*
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mRNA from alignment at H-paniculata_contig1844:2669..6182-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1844.4534.1 ID=mRNA_H-paniculata_contig1844.4534.1|Name=mRNA_H-paniculata_contig1844.4534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3514bp|location=Sequence derived from alignment at H-paniculata_contig1844:2669..6182- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACTGGCGATTGCTGCAATAGCCAACCGAGGAGTCAAGGCTCAGACGCT
CTGTGAAATTTTTGACGCTGCGGAGATTTCGGGGAGAACCGACGCTACCG
CGTTATTCGATGAAGTGAATGAACTTTCCTTCGCGTGTGCGGACAATGAG
TTTTTCCTAGGTGGGTCAAGTTGAAAAGCCGACTGGTTTTGAGACGGGCG
TGGAGGGATTCAATCAAACCTGTCTGTTTCACTTGCCGTCCCCTACATGT
TAGTGCTTTTTATGGATTAATAGAAGGCTAGCCCACGCTTCAATGTTTGC
ATTTCGAAATGGCGTCTGGTACGTACTTCTCGCGAACGGACCAACCTGTC
GATGTACTCTGAGCTGATCATTTAGTTTCCCAATTCTTCACGTCTGTGAT
TGCTATATATGGAACGACTCAGGTTTTGACCTTAATCGTCACACGGTCAG
CGGGACAATCCAATCGCTACGCTTTTCCTGCACGGACGGAGAAGTGTCAA
AACGGTTCGGCGGAAGCGATGAGTTTGGGGAAAGTAGTCAGGTTTTCGAC
GTCGGGATCTTTTCTATCGAAAGCAAAGAAGTGGAGCATGAATCCTACCC
ATACATAGGAAGACTGTACGTGAAGGGCTATGACCTTACGTTGGCAAATG
GGCTTGTTGAAAAGCCGTGGGGACCTTATGGGTGAGCTGTGTTGTGCTGT
ATTATCACGTACACCACGGATATTGTAGAAGGAACGCCTAACGAGTGAGT
CGATGTGACGGAAGTATGTTCCAGAGCCTCCGTGGACTGGCCATACGGAC
GGGAGAATGTTGACGCTTGTATTGTTTTATTCTGGAGGTCTAGAGACTTC
ATCGCAGGACGCTATATATCCTACGACTACAGTAGACTGACAATACTGCA
ATTGGTGGAGGTCAGACAACAAAGAAATGACGGAGCGACTCTGCGCAGGA
AAAAATTATCTTTCTATCTGCTCTCAGAGTGCCTACCACTCATCTTGCTG
ACCTTACTACCAGCTGTTGATATCGAAGGAACCTGTCGCAATTTACCTTG
TCATGTACAATACGGGTGCCCTGACAAGAGGCTCTCATTCCGAATGAGGC
TTGAATCCTTTTTGCTACGGTTAATCGTGAGCATTATTTAGTATGGGGCT
CGAGGGAAATTGGTTATTTTTCTTTGTTTTGGAGACTTGAAATTTTTGTT
ATGGGGCCCGCGCTCATGTTTTATCACTCCCCCGCGCTCACGTCTTATCG
TATCTCATCATCTGTTGCGCTTGGCTAGGGTTGAAGCGGGAGAAAATTAC
ACCGATACAGCTTTGTCTACCGATTGCCAAAGCACGGGATTGGAGGCGTT
CGCCACTGGGGTCACCGTTTGGGCCAGCGAGAAATTCGTGTACGGCATTC
GGTTTGCCTGTGCTGAAGTCACGGCTACGTGCTATCCGCCAAGCTATCCG
GACCCACCTACCCCAGCGCCTTCAGACCCACTGTATTTCCCACAGCTAAC
ACCCGCCCCGACAGAGGCTACTGCAGGCGTCATATGTGAGGGATTTCTGT
AGGAGAGCTTTGCGAATGTCCAAGCGCGTAGCTCTTGTTGATACCCGACA
TGGCCTAGATATCGTGAGCCGCCCAATAGGGTACACCGCTGTCAACTCGA
GACGCACTTGTTTCGTAGGAGATTGATTTTTGGATTCACCACTCTGCTGC
TGCTGCATTAAATCCTCTCTAGCGCTGGAGACTGTTTCAGAGCAAAAAAA
GCAACTAATGACAACGTTGGGCGTTTAAGTCGTTGTCGGCAGAACCATAC
CAACTACCTGTCGGCTGCTGCAGGTACTGTCTGTGCTGGACTGCCTATTT
GAACAGCGGCGGCTCCTTATCCCCGTATTCATGTCAGCGCCATCGTTATT
ACTTGTTCGGTGTTGGTCATTAGACAGAGGTTATATGGGAATCGGCGCCG
AAGGGGTCAAGTTCATTGGACTCTTTCGGGTACTGGAACGCGCATCTACG
GCGTGCCGAATCAAAAGACTTCCAAGTGTTTCGTGTATGTCCGCTGTGAC
AGGTTTGATTTGACACGAGCTGTGGGAAGTACATATTGTGCGAAGATACC
GCGTCACGCAGCAAAAAATCGAGCATGAAAATATACCACAATTTTATTCT
TTCTACTGCTGCTTTGTCGTACTGGTTGAAGTCGGAGTAGATAAGACACA
TGTCAAGCTCATGGATGGATAGAAAGATACACATAACGTGACTGTAACCC
AGTAGGGCGCCCCAACTCAAGCATCAACAGAGGTTGTACGACTTTCTCTC
ATCACCGTTTCCCTTTTGCTCACCTGCGACTCAAATCCCGACGACGCCAG
CTATCGACACGAAGGCGCCGATGGCGGCGCTGACTGAAACAAAAGAAGAA
GCATCAGGTACGGATCTACGGTTTCGATTCGCGTGTATGACAAGATAGCC
GCCGAGGTCTTGAGTTCACCGTTTTTACCTTCGCCGACCGTGAGGTTCTA
GGCAACGACGCCACATAGTTGCTAGGGCATTGGGTGACCTTACAATGATT
TCGTCTCTCGAGGTCGCTCCTGAGACCCATAGTCTCTATAGTCACCGCCT
GGTAGGCGATGTCCATCTGCGATATCGCTTGTCGTGACCACCTTGGGTCT
TAGCCCCGAGTCTTTATCATGCACCCAATATTTGTGTTACGCTATTTAGG
GATTTACGCACAACACACGAGAGCTCTGTGTACCTCCAAACACCGCGTTT
TACTTTGAAGTCGTCCGCTTTGTAGCCCCTTGTATTTTCCCCTTATTCCC
ACTGTACTGTTTTTTTTGCCGGTCATTTTGCGTCCTCCTTCGGATGATGG
CGAAGGCTCGCGATGGTTCGACGCTGCGTGGGAAGTGGCTGTCACCGTGC
TTGGAGCTCTGGTGACTGGGGCAGCAGCTATGCTGCTTAGGTCATGTTGG
GGAAATCCGTTGAGGTGTTGCAAGAGACCAGTGCTTAATGACACACCGTC
GAAGCGAGATATATCTTTGGCCTGAATTAAGCCGGCAGCTTTGGTGTAAT
AGATTGTTGCTGTGGTCTGCTTGATAGTGGCAGTTACTATTGCTCCTGTC
GTGGATTGCAGATGTGGTATTTTTATAGTGTCGATGTGGTACTCTAAATT
AGAGATGTCTCTGCAGTAGGTAGCGTAGATGTTTCGTTCGTATGACTGCT
TTTCCGTACCTGAGGCGGCCGATCGCTCTCTGCGAGTGGGGTTACTAGTT
AGTCTTGAACGGTGACGAATTTTTCCTGGACATTCAATCGTTTTTACGTA
TTCATGTCGAGCTGGGAATATATGGGAGAGCACGGTGTATACTAGCAGGT
AGTTCCCTCGGATATATATTTTTTGCCGTCTGACGCAAGCTCGGAGAATG
GTCGGAATCCATTACTCCATGTAACCAATCCGGGGTTGCTCATATTTTAC
GCTGAAATTATTAGGGCAGCGTGATTGTCGCTCTCGCAGGCAAATTGCAG
CATGTGCTTTGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1844:2669..6182-

>mRNA_H-paniculata_contig1844.4534.1 ID=mRNA_H-paniculata_contig1844.4534.1|Name=mRNA_H-paniculata_contig1844.4534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1806bp|location=Sequence derived from alignment at H-paniculata_contig1844:2669..6182- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACTGGCGATTGCTGCAATAGCCAACCGAGGAGTCAAGGCTCAGACGCT
CTGTGAAATTTTTGACGCTGCGGAGATTTCGGGGAGAACCGACGCTACCG
CGTTATTCGATGAAGTGAATGAACTTTCCTTCGCGTGTGCGGACAATGAG
TTTTTCCTAGGGACTGGCGATTGCTGCAATAGCCAACCGAGGAGTCAAGG
CTCAGACGCTCTGTGAAATTTTTGACGCTGCGGAGATTTCGGGGAGAACC
GACGCTACCGCGTTATTCGATGAAGTGAATGAACTTTCCTTCGCGTGTGC
GGACAATGAGTTTTTCCTAGGTTTTGACCTTAATCGTCACACGGTCAGCG
GGACAATCCAATCGCTACGCTTTTCCTGCACGGACGGAGAAGTGTCAAAA
CGGTTCGGCGGAAGCGATGAGTTTGGGGAAAGTAGTCAGGTTTTCGACGT
CGGGATCTTTTCTATCGAAAGCAAAGAAGTGGAGCATGAATCCTACCCAT
ACATAGGAAGACTGTACGTGAAGGGCTATGACCTTACGTTGGCAAATGGG
CTTGTTGAAAAGCCGTGGGGACCTTATGGGTTTTGACCTTAATCGTCACA
CGGTCAGCGGGACAATCCAATCGCTACGCTTTTCCTGCACGGACGGAGAA
GTGTCAAAACGGTTCGGCGGAAGCGATGAGTTTGGGGAAAGTAGTCAGGT
TTTCGACGTCGGGATCTTTTCTATCGAAAGCAAAGAAGTGGAGCATGAAT
CCTACCCATACATAGGAAGACTGTACGTGAAGGGCTATGACCTTACGTTG
GCAAATGGGCTTGTTGAAAAGCCGTGGGGACCTTATGGGGTTGAAGCGGG
AGAAAATTACACCGATACAGCTTTGTCTACCGATTGCCAAAGCACGGGAT
TGGAGGCGTTCGCCACTGGGGTCACCGTTTGGGCCAGCGAGAAATTCGTG
TACGGCATTCGGTTTGCCTGTGCTGAAGTCACGGCTACGTGCTATCCGCC
AAGCTATCCGGACCCACCTACCCCAGCGCCTTCAGACCCACTGTATTTCC
CACAGCTAACACCCGCCCCGACAGAGGCTACTGCAGGCGTCATATGGTTG
AAGCGGGAGAAAATTACACCGATACAGCTTTGTCTACCGATTGCCAAAGC
ACGGGATTGGAGGCGTTCGCCACTGGGGTCACCGTTTGGGCCAGCGAGAA
ATTCGTGTACGGCATTCGGTTTGCCTGTGCTGAAGTCACGGCTACGTGCT
ATCCGCCAAGCTATCCGGACCCACCTACCCCAGCGCCTTCAGACCCACTG
TATTTCCCACAGCTAACACCCGCCCCGACAGAGGCTACTGCAGGCGTCAT
ATCTATCGACACGAAGGCGCCGATGGCGGCGCTGACTGAAACAAAAGAAG
AAGCATCAGCTATCGACACGAAGGCGCCGATGGCGGCGCTGACTGAAACA
AAAGAAGAAGCATCAGGCTCGCGATGGTTCGACGCTGCGTGGGAAGTGGC
TGTCACCGTGCTTGGAGCTCTGGTGACTGGGGCAGCAGCTATGCTGCTTA
GGTCATGTTGGGGAAATCCGTTGAGGTGTTGCAAGAGACCAGTGCTTAAT
GACACACCGTCGAAGCGAGATATATCTTTGGCCTGAGCTCGCGATGGTTC
GACGCTGCGTGGGAAGTGGCTGTCACCGTGCTTGGAGCTCTGGTGACTGG
GGCAGCAGCTATGCTGCTTAGGTCATGTTGGGGAAATCCGTTGAGGTGTT
GCAAGAGACCAGTGCTTAATGACACACCGTCGAAGCGAGATATATCTTTG
GCCTGA
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