mRNA_H-paniculata_contig18435.4532.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18435.4532.1
Unique NamemRNA_H-paniculata_contig18435.4532.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18435.4532.1 vs. uniprot
Match: D7FPH2_ECTSI (UMP-CMP kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPH2_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 2.780e-61
Identity = 100/131 (76.34%), Postives = 114/131 (87.02%), Query Frame = 1
Query:   28 YVHLSAGELLRQERESGSEDGQLIDEYIRDGRIVPVGISLGLLQRAMKESGPFARFLIDGFPRNSDNVQGWDTVMNGFADVRRVLFLHCPEDVLERRLLSRGKSSGRTDDNAETARRRFQTFVKTTLPVCE 420
            YVHLSAGELLRQER SGS DGQLID+YI +GRIVPV ISL LL++AM+ S P +RFLIDGFPRN DN++GWD  M   AD+R VLFL+CPEDVLE+RLLSRGKSSGRTDDNAETA+RRFQT+V+ TLPV E
Sbjct:  199 YVHLSAGELLRQERASGSSDGQLIDDYIAEGRIVPVAISLALLRKAMETSEPHSRFLIDGFPRNRDNMEGWDEAMGDVADIRSVLFLYCPEDVLEKRLLSRGKSSGRTDDNAETAKRRFQTYVEMTLPVVE 329          
BLAST of mRNA_H-paniculata_contig18435.4532.1 vs. uniprot
Match: A0A835YW75_9STRA (UMP-CMP kinase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW75_9STRA)

HSP 1 Score: 181 bits (458), Expect = 7.870e-54
Identity = 92/131 (70.23%), Postives = 108/131 (82.44%), Query Frame = 1
Query:   28 YVHLSAGELLRQERESGSEDGQLIDEYIRDGRIVPVGISLGLLQRAMKESGPFARFLIDGFPRNSDNVQGWDTVMNGFADVRRVLFLHCPEDVLERRLLSRGKSSGRTDDNAETARRRFQTFVKTTLPVCE 420
            YVHLSAGELLRQ RESGSE+G L+DEY+R+GRIVPV +SLGLL++AM  SG   RFLIDGFPRN DN+ GW+ +M   ADV  VLFL CPE VLE RLL RG SSGR+DDN E+AR+RF+T+V+TTLPV E
Sbjct:   31 YVHLSAGELLRQARESGSEEGALLDEYLREGRIVPVELSLGLLRKAMIASGG-TRFLIDGFPRNQDNLDGWERIMGKEADVTCVLFLECPESVLEARLLHRGLSSGRSDDNLESARKRFRTYVETTLPVVE 160          
BLAST of mRNA_H-paniculata_contig18435.4532.1 vs. uniprot
Match: A0A7S2XUB9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUB9_9STRA)

HSP 1 Score: 172 bits (435), Expect = 2.150e-50
Identity = 84/129 (65.12%), Postives = 109/129 (84.50%), Query Frame = 1
Query:   28 YVHLSAGELLRQERESGSEDGQLIDEYIRDGRIVPVGISLGLLQRAMKESGPFARFLIDGFPRNSDNVQGWDTVMNGFADVRRVLFLHCPEDVLERRLLSRGKSSGRTDDNAETARRRFQTFVKTTLPV 414
            +VHLSAGELLRQER SGS DGQ+I+++I++G+IVPV ++LGLL++AM E+    RFLIDGFPRN DN+QGW+ VM G A V  VLF+ CPE  LERRLL RG++SGRTDDN E+AR+RF+T+V++T+PV
Sbjct:   18 FVHLSAGELLRQERASGSPDGQMIEDFIKEGKIVPVAVTLGLLRKAM-EASKGNRFLIDGFPRNWDNIQGWEEVMGGQAQVDCVLFIECPEAELERRLLHRGETSGRTDDNIESARKRFKTYVESTMPV 145          
BLAST of mRNA_H-paniculata_contig18435.4532.1 vs. uniprot
Match: UPI00106D6E0D (UMP-CMP kinase-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D6E0D)

HSP 1 Score: 167 bits (422), Expect = 5.810e-50
Identity = 78/129 (60.47%), Postives = 104/129 (80.62%), Query Frame = 1
Query:   28 YVHLSAGELLRQERESGSEDGQLIDEYIRDGRIVPVGISLGLLQRAMKESGPFARFLIDGFPRNSDNVQGWDTVMNGFADVRRVLFLHCPEDVLERRLLSRGKSSGRTDDNAETARRRFQTFVKTTLPV 414
            +VHLSAGELLRQER+SGS+DG LI +YI++G+IVPV I++ LLQ+AMK S P  RFL+DGFPRN DN+QGW   M+G  DV+ VLF  CPE+   RR++ RGK+SGRTDDN ++ R+RF+T+ + T+P+
Sbjct:   32 FVHLSAGELLRQERDSGSKDGNLIQDYIKEGKIVPVAITISLLQKAMKNS-PVKRFLVDGFPRNEDNLQGWSERMDGIVDVKCVLFFDCPEEECIRRIVERGKTSGRTDDNIDSLRKRFKTYKEQTMPI 159          
BLAST of mRNA_H-paniculata_contig18435.4532.1 vs. uniprot
Match: A0A7S2SV26_9STRA (UMP-CMP kinase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV26_9STRA)

HSP 1 Score: 164 bits (415), Expect = 9.380e-48
Identity = 84/128 (65.62%), Postives = 105/128 (82.03%), Query Frame = 1
Query:   31 VHLSAGELLRQERESGSEDGQLIDEYIRDGRIVPVGISLGLLQRAMKESGPFARFLIDGFPRNSDNVQGWDTVMNGFADVRRVLFLHCPEDVLERRLLSRGKSSGRTDDNAETARRRFQTFVKTTLPV 414
            VHLSAGELLR+ER SGS DGQLI+EY+RDGRIVPV ISLGLL++AM +    + FL+DGFPRN DNV+GW+ +M   A+V  VLFL CPE+  ERRLL RG++SGR+DDN E+AR+RF+TF + T+PV
Sbjct:  109 VHLSAGELLRKERASGSPDGQLIEEYLRDGRIVPVSISLGLLRQAM-DGDAGSCFLVDGFPRNWDNVEGWNELMQDSAEVLCVLFLDCPEEEQERRLLIRGETSGRSDDNLESARKRFKTFHQETMPV 235          
BLAST of mRNA_H-paniculata_contig18435.4532.1 vs. uniprot
Match: UPI000A2A4AAD (UMP-CMP kinase n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A4AAD)

HSP 1 Score: 162 bits (409), Expect = 9.610e-48
Identity = 78/129 (60.47%), Postives = 100/129 (77.52%), Query Frame = 1
Query:   28 YVHLSAGELLRQERESGSEDGQLIDEYIRDGRIVPVGISLGLLQRAMKESGPFARFLIDGFPRNSDNVQGWDTVMNGFADVRRVLFLHCPEDVLERRLLSRGKSSGRTDDNAETARRRFQTFVKTTLPV 414
            YVHLSAGELLR ER SGS+DG LI+ YIRDGRIVPV I++GLLQ+AM +     +FLIDGFPRN DN+ GW   M+G  D++ VLF  CPE+   +R++ RGKSSGR+DDN E+ R+RFQT+  +T+P+
Sbjct:   51 YVHLSAGELLRAERASGSKDGDLIESYIRDGRIVPVEITIGLLQKAMNKCSS-QKFLIDGFPRNEDNLMGWKREMDGKVDLKAVLFFDCPEEECIKRIMDRGKSSGRSDDNLESLRKRFQTYKNSTMPI 178          
BLAST of mRNA_H-paniculata_contig18435.4532.1 vs. uniprot
Match: A7SJH0_NEMVE (UMP-CMP kinase n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7SJH0_NEMVE)

HSP 1 Score: 156 bits (395), Expect = 7.430e-46
Identity = 76/131 (58.02%), Postives = 100/131 (76.34%), Query Frame = 1
Query:   28 YVHLSAGELLRQERESGSEDGQLIDEYIRDGRIVPVGISLGLLQRAMKESGPFARFLIDGFPRNSDNVQGWDTVMNGFADVRRVLFLHCPEDVLERRLLSRGKSSGRTDDNAETARRRFQTFVKTTLPVCE 420
            YVHLSAGELLR+ER SGS+DG LI+  + +G+IVPV I++ LLQ+AM +S    +FLIDGFPRN DN+QGW++ MN   DV+ VLF  CPED+   R++SRG+SSGR DDN E+ R+RF T   +T+P+ E
Sbjct:   33 YVHLSAGELLREERRSGSKDGDLIENCMTEGKIVPVAITVSLLQKAMAKSD-VQKFLIDGFPRNEDNLQGWESRMNDKVDVKAVLFFECPEDICIGRIMSRGQSSGRPDDNIESLRKRFHTHENSTMPIIE 162          
BLAST of mRNA_H-paniculata_contig18435.4532.1 vs. uniprot
Match: UPI001F033FC6 (UMP-CMP kinase-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F033FC6)

HSP 1 Score: 155 bits (391), Expect = 2.910e-45
Identity = 73/131 (55.73%), Postives = 100/131 (76.34%), Query Frame = 1
Query:   28 YVHLSAGELLRQERESGSEDGQLIDEYIRDGRIVPVGISLGLLQRAMKESGPFARFLIDGFPRNSDNVQGWDTVMNGFADVRRVLFLHCPEDVLERRLLSRGKSSGRTDDNAETARRRFQTFVKTTLPVCE 420
            +VHLSAGELLR ER+SGS+DG LI   I+DG+IVPV I++ L+Q+AM++S    +FL+DGFPRN DN+QGW+  M G  DV+ VLF  CPE+   RR++ RGK+SGR+DDN  + R+RF T+ + T+P+ E
Sbjct:   32 FVHLSAGELLRNERDSGSKDGNLIQNCIKDGKIVPVEITIALIQKAMEKSS-VKKFLVDGFPRNEDNLQGWNNRMTGIVDVKCVLFFDCPEEECIRRIVERGKTSGRSDDNIHSLRKRFNTYKEQTMPIIE 161          
BLAST of mRNA_H-paniculata_contig18435.4532.1 vs. uniprot
Match: A0A2D4BMP7_PYTIN (UMP-CMP kinase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMP7_PYTIN)

HSP 1 Score: 154 bits (390), Expect = 4.930e-45
Identity = 80/132 (60.61%), Postives = 104/132 (78.79%), Query Frame = 1
Query:   28 YVHLSAGELLRQERESGSEDGQLIDEYIRDGRIVPVGISLGLLQRAMKESGPFARFLIDGFPRNSDNVQGWDTVM-NGFADVRRVLFLHCPEDVLERRLLSRGKSSGRTDDNAETARRRFQTFVKTTLPVCE 420
            +VHLSAG+LLR+ER+SGSE+G+LID  I++G+IVPV I+L LLQ+AM  SG    FLIDGFPRN DN+QGW   M +    V  VLF  CPE+V+E RLL RGK+SGRTDDNAE  R+RF+T++++T+PV +
Sbjct:   33 FVHLSAGDLLREERQSGSENGELIDRMIKEGQIVPVQITLSLLQQAMIVSGR-ELFLIDGFPRNFDNLQGWQEQMPDEDYHVEGVLFYDCPENVMEERLLERGKTSGRTDDNAEAIRKRFRTYIESTMPVID 163          
BLAST of mRNA_H-paniculata_contig18435.4532.1 vs. uniprot
Match: A0A8C1BFM4_CYPCA (Nucleoside-diphosphate kinase n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1BFM4_CYPCA)

HSP 1 Score: 154 bits (389), Expect = 6.400e-45
Identity = 81/136 (59.56%), Postives = 103/136 (75.74%), Query Frame = 1
Query:   28 YVHLSAGELLRQERE-SGSEDGQLIDEYIRDGRIVPVGISLGLLQRAMKESGPFA----RFLIDGFPRNSDNVQGWDTVMNGFADVRRVLFLHCPEDVLERRLLSRGKSSGRTDDNAETARRRFQTFVKTTLPVCE 420
            Y HLSAG+LLR+ER  SGSE GQLID YI++GRIVPV I++ LL++AM+E+        RFLIDGFPRN DN+QGW+TVM+G ADV+ VLF  C  +V   R L RGKSSGRTDDN E+  +R QT++++T P+ E
Sbjct:   28 YTHLSAGDLLREERSRSGSEFGQLIDTYIKEGRIVPVEITISLLKKAMEETMKADEKNFRFLIDGFPRNQDNLQGWNTVMDGKADVKFVLFFDCGNEVCIDRCLERGKSSGRTDDNRESLEKRIQTYLQSTRPIIE 163          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18435.4532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPH2_ECTSI2.780e-6176.34UMP-CMP kinase n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A835YW75_9STRA7.870e-5470.23UMP-CMP kinase n=2 Tax=Tribonema minus TaxID=30337... [more]
A0A7S2XUB9_9STRA2.150e-5065.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI00106D6E0D5.810e-5060.47UMP-CMP kinase-like n=1 Tax=Dendronephthya gigante... [more]
A0A7S2SV26_9STRA9.380e-4865.63UMP-CMP kinase n=1 Tax=Rhizochromulina marina TaxI... [more]
UPI000A2A4AAD9.610e-4860.47UMP-CMP kinase n=1 Tax=Exaiptasia diaphana TaxID=2... [more]
A7SJH0_NEMVE7.430e-4658.02UMP-CMP kinase n=2 Tax=Nematostella vectensis TaxI... [more]
UPI001F033FC62.910e-4555.73UMP-CMP kinase-like n=1 Tax=Xenia sp. Carnegie-201... [more]
A0A2D4BMP7_PYTIN4.930e-4560.61UMP-CMP kinase n=1 Tax=Pythium insidiosum TaxID=11... [more]
A0A8C1BFM4_CYPCA6.400e-4559.56Nucleoside-diphosphate kinase n=1 Tax=Cyprinus car... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18435contigH-paniculata_contig18435:2323..3477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.5
Seed ortholog evalue8.4e-51
Seed eggNOG ortholog2880.D7FPH2
KEGG rclassRC00002
KEGG koko:K13800
KEGG ReactionR00158,R00512,R01665,R11891,R11892
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
KEGG ModuleM00052
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cytidylate kinase activity
EggNOG OGsCOG0563@1,KOG3079@2759
Ec32 ortholog descriptionAdenylate kinase/UMP-CMP kinase
Ec32 orthologEc-14_004920.1
EC2.7.4.14
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size420
Cds size420
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929429.3104377-CDS-H-paniculata_contig18435:2322..25081622929429.3104377-CDS-H-paniculata_contig18435:2322..2508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18435 2323..2508 -
1691480857.5490978-CDS-H-paniculata_contig18435:2322..25081691480857.5490978-CDS-H-paniculata_contig18435:2322..2508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18435 2323..2508 -
1622929429.3310444-CDS-H-paniculata_contig18435:3243..34771622929429.3310444-CDS-H-paniculata_contig18435:3243..3477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18435 3244..3477 -
1691480857.56141-CDS-H-paniculata_contig18435:3243..34771691480857.56141-CDS-H-paniculata_contig18435:3243..3477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18435 3244..3477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18435.4532.1prot_H-paniculata_contig18435.4532.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18435 2323..3477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18435.4532.1

>prot_H-paniculata_contig18435.4532.1 ID=prot_H-paniculata_contig18435.4532.1|Name=mRNA_H-paniculata_contig18435.4532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
MHTHTHTHSYVHLSAGELLRQERESGSEDGQLIDEYIRDGRIVPVGISLG
LLQRAMKESGPFARFLIDGFPRNSDNVQGWDTVMNGFADVRRVLFLHCPE
DVLERRLLSRGKSSGRTDDNAETARRRFQTFVKTTLPVCE
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mRNA from alignment at H-paniculata_contig18435:2323..3477-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18435.4532.1 ID=mRNA_H-paniculata_contig18435.4532.1|Name=mRNA_H-paniculata_contig18435.4532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1155bp|location=Sequence derived from alignment at H-paniculata_contig18435:2323..3477- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACACACACACACATACACACAGCTACGTACACCTGTCTGCGGGAGA GTTGCTGCGCCAGGAGCGCGAGAGTGGGTCGGAAGATGGACAGCTCATCG ATGAATACATTCGGGACGGGCGTATTGTGCCCGTGGGCATCAGCCTGGGG CTGTTGCAGCGAGCCATGAAGGAAAGCGGCCCTTTCGCGAGGTTTCTAAT TGACGGTTTCCCTCGCAACAGCGACAACGTCCAGGTACGCATGTATATAA AAAAGAAAAAAACATGAACCAAAAGAGAAGGCCGTTCAAAATGTTAATTG TGTGTGTGTGTGTGTGTGTGTGTGTATCGTTTCTCTTTATTTACTCATCG TTTGTTTGTTTTTTTCAATGTATGCTTTCGGTTATTTAGGTGCGGGGGAC AATAGATAACATGCTTTGGATCGCGTCAGAAGAACCATTTCTGAAATTAT TTGTAATTCAAGAAATGAAAAAACACTCTACAGTGAAAAATCTCATCTGA TCATTTCTGAAATTTCCAGGGGGAAAAAAAAAAAAGACGCTCACGGTGAG ATCGACCCCTAAAAAGGAATCTATGGGTGATTTTTCACCGACTTGATACA GGACCACGGGAAGGAACGGGACGAGACGGAGCGACCTTTACACTTTATTT GATCCAGGGATCCCGTCCCGTGAGCCTATATGGTTCTGGACCAACCCCTG GGCATTTTTCAAAACAATCTGTATGCCGTGTATACTAGCATATGTGGAAC CCCTCCACCGTTGTACCTGAGGAAGATGCTTGCTTCGCCTGCGTTAAAGA GTTGGAAAATGCACACAAACACACACACGCACACGCACACACACACACAC ACAAACACACACATTTTTCCGCGACTGCTACAAGTACCGACTGACCGTTG CATTCATATGGTAGGCGTTATTTTTTTCGACGCTCCGACTCGGTCGCACC CCGCCCCTCGCCACCCAAGGGGTGGGACACCGTGATGAATGGCTTCGCTG ACGTACGGCGTGTGCTATTCCTGCACTGCCCGGAGGACGTGCTCGAGCGG CGTTTGCTTTCGAGGGGGAAAAGCAGCGGGAGGACTGATGACAACGCGGA GACTGCTCGAAGACGATTCCAGACTTTCGTCAAGACCACTTTGCCGGTGT GTGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig18435:2323..3477-

>mRNA_H-paniculata_contig18435.4532.1 ID=mRNA_H-paniculata_contig18435.4532.1|Name=mRNA_H-paniculata_contig18435.4532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig18435:2323..3477- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACACACACACACATACACACAGCTACGTACACCTGTCTGCGGGAGA
GTTGCTGCGCCAGGAGCGCGAGAGTGGGTCGGAAGATGGACAGCTCATCG
ATGAATACATTCGGGACGGGCGTATTGTGCCCGTGGGCATCAGCCTGGGG
CTGTTGCAGCGAGCCATGAAGGAAAGCGGCCCTTTCGCGAGGTTTCTAAT
TGACGGTTTCCCTCGCAACAGCGACAACGTCCAGATGCACACACACACAC
ATACACACAGCTACGTACACCTGTCTGCGGGAGAGTTGCTGCGCCAGGAG
CGCGAGAGTGGGTCGGAAGATGGACAGCTCATCGATGAATACATTCGGGA
CGGGCGTATTGTGCCCGTGGGCATCAGCCTGGGGCTGTTGCAGCGAGCCA
TGAAGGAAAGCGGCCCTTTCGCGAGGTTTCTAATTGACGGTTTCCCTCGC
AACAGCGACAACGTCCAGGGGTGGGACACCGTGATGAATGGCTTCGCTGA
CGTACGGCGTGTGCTATTCCTGCACTGCCCGGAGGACGTGCTCGAGCGGC
GTTTGCTTTCGAGGGGGAAAAGCAGCGGGAGGACTGATGACAACGCGGAG
ACTGCTCGAAGACGATTCCAGACTTTCGTCAAGACCACTTTGCCGGTGTG
TGAAGGGTGGGACACCGTGATGAATGGCTTCGCTGACGTACGGCGTGTGC
TATTCCTGCACTGCCCGGAGGACGTGCTCGAGCGGCGTTTGCTTTCGAGG
GGGAAAAGCAGCGGGAGGACTGATGACAACGCGGAGACTGCTCGAAGACG
ATTCCAGACTTTCGTCAAGACCACTTTGCCGGTGTGTGAA
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