mRNA_H-paniculata_contig1071.453.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1071.453.1 vs. uniprot
Match: D7FMC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC7_ECTSI) HSP 1 Score: 112 bits (281), Expect = 1.920e-21 Identity = 71/176 (40.34%), Postives = 87/176 (49.43%), Query Frame = 2 Query: 1892 MVSDIMTVLSKVPWSMKTEEGARRCKQMLTELQTLMVAEKALVEERRVANRFKEVPPSDAMAVFVLGNAFIGLHCALQEFENLLPLARDVARCISDCPGLARYQLHGYHTALAVLRAFGKREEFATLVAAAPIELRRSTVTCRPLHFDTEGDLCSRAVCIKHCKAITELGKRHAAE 2419
MVSDIM +LS+V W+ + EE A++ K+ L+ELQ+L+ AEKALVEERR AN YQ H +H AL +L AFGKR EF L+A AP ELR S T RPL +D D CS AVC +H K I E+ K A E
Sbjct: 3 MVSDIMAMLSRVSWTARVEEAAQKTKRELSELQSLITAEKALVEERRSANWLD-------------------------------------------------YQPHAFHAALVILAAFGKRPEFELLLAVAPRELRLSESTGRPLTYDEHADTCSHAVCRRHAKVIVEMSKGLARE 129 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1071.453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1071.453.1 >prot_H-paniculata_contig1071.453.1 ID=prot_H-paniculata_contig1071.453.1|Name=mRNA_H-paniculata_contig1071.453.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1368bp MDESDAGAGCPKNSAPASVTVGTTTSASPALKARSGGRRRSCNRCSAKKEback to top mRNA from alignment at H-paniculata_contig1071:3552..27143- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1071.453.1 ID=mRNA_H-paniculata_contig1071.453.1|Name=mRNA_H-paniculata_contig1071.453.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=23592bp|location=Sequence derived from alignment at H-paniculata_contig1071:3552..27143- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1071:3552..27143- >mRNA_H-paniculata_contig1071.453.1 ID=mRNA_H-paniculata_contig1071.453.1|Name=mRNA_H-paniculata_contig1071.453.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=8208bp|location=Sequence derived from alignment at H-paniculata_contig1071:3552..27143- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |