mRNA_H-paniculata_contig1843.4530.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1843.4530.1
Unique NamemRNA_H-paniculata_contig1843.4530.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1843.4530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1843contigH-paniculata_contig1843:7031..7565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size535
Cds size423
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929429.1499164-UTR-H-paniculata_contig1843:7030..71421622929429.1499164-UTR-H-paniculata_contig1843:7030..7142Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1843 7031..7142 +
1691480857.472724-UTR-H-paniculata_contig1843:7030..71421691480857.472724-UTR-H-paniculata_contig1843:7030..7142Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1843 7031..7142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929429.1627932-CDS-H-paniculata_contig1843:7142..75651622929429.1627932-CDS-H-paniculata_contig1843:7142..7565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1843 7143..7565 +
1691480857.4818661-CDS-H-paniculata_contig1843:7142..75651691480857.4818661-CDS-H-paniculata_contig1843:7142..7565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1843 7143..7565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1843.4530.1prot_H-paniculata_contig1843.4530.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1843 7143..7565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1843.4530.1

>prot_H-paniculata_contig1843.4530.1 ID=prot_H-paniculata_contig1843.4530.1|Name=mRNA_H-paniculata_contig1843.4530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
MSSQFFPLPPSRLMALLVAALASRSAAAGSRLFQSHFATHGSLKVRLRAC
SSSSPVTAGMGTTTTMSLRGHGYSTRRLGGAPGKGSRRSSGGGNGGHGGN
RGGGVQKRTAAAGGRRSAFGEDRTSGTEARRWGGGGGWIDA
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mRNA from alignment at H-paniculata_contig1843:7031..7565+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1843.4530.1 ID=mRNA_H-paniculata_contig1843.4530.1|Name=mRNA_H-paniculata_contig1843.4530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=535bp|location=Sequence derived from alignment at H-paniculata_contig1843:7031..7565+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCGAGATCCTTCCTCCTCCTTCGCTGTGCCTCTCAGTGACCGAAAGCG
TCCCTTGACCGGGGCGCCATATCCACTGAGCAGCAGCAACGACAGCAACG
ACCAATAGCCTGATGAGCTCGCAGTTTTTCCCTCTTCCTCCGAGTCGCCT
CATGGCGTTGCTCGTCGCAGCCCTCGCGTCGCGCAGTGCTGCTGCCGGAT
CGAGACTGTTTCAATCCCATTTCGCTACCCATGGAAGTTTGAAGGTTAGG
CTTCGTGCTTGTTCTTCAAGCTCGCCGGTCACAGCTGGCATGGGTACAAC
GACCACCATGTCGCTGCGTGGGCATGGCTATAGCACGAGAAGATTAGGAG
GCGCACCTGGCAAGGGCTCGCGACGGAGTAGCGGTGGCGGGAACGGCGGC
CACGGAGGCAACAGAGGTGGGGGTGTTCAGAAAAGAACTGCGGCAGCAGG
GGGCAGAAGGTCTGCCTTCGGTGAAGACCGTACTAGTGGGACCGAGGCTC
GTCGGTGGGGTGGCGGTGGGGGTTGGATTGACGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1843:7031..7565+

>mRNA_H-paniculata_contig1843.4530.1 ID=mRNA_H-paniculata_contig1843.4530.1|Name=mRNA_H-paniculata_contig1843.4530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig1843:7031..7565+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCTCGCAGTTTTTCCCTCTTCCTCCGAGTCGCCTCATGGCGTTGCT
CGTCGCAGCCCTCGCGTCGCGCAGTGCTGCTGCCGGATCGAGACTGTTTC
AATCCCATTTCGCTACCCATGGAAGTTTGAAGGTTAGGCTTCGTGCTTGT
TCTTCAAGCTCGCCGGTCACAGCTGGCATGGGTACAACGACCACCATGTC
GCTGCGTGGGCATGGCTATAGCACGAGAAGATTAGGAGGCGCACCTGGCA
AGGGCTCGCGACGGAGTAGCGGTGGCGGGAACGGCGGCCACGGAGGCAAC
AGAGGTGGGGGTGTTCAGAAAAGAACTGCGGCAGCAGGGGGCAGAAGGTC
TGCCTTCGGTGAAGACCGTACTAGTGGGACCGAGGCTCGTCGGTGGGGTG
GCGGTGGGGGTTGGATTGACGCGATGAGCTCGCAGTTTTTCCCTCTTCCT
CCGAGTCGCCTCATGGCGTTGCTCGTCGCAGCCCTCGCGTCGCGCAGTGC
TGCTGCCGGATCGAGACTGTTTCAATCCCATTTCGCTACCCATGGAAGTT
TGAAGGTTAGGCTTCGTGCTTGTTCTTCAAGCTCGCCGGTCACAGCTGGC
ATGGGTACAACGACCACCATGTCGCTGCGTGGGCATGGCTATAGCACGAG
AAGATTAGGAGGCGCACCTGGCAAGGGCTCGCGACGGAGTAGCGGTGGCG
GGAACGGCGGCCACGGAGGCAACAGAGGTGGGGGTGTTCAGAAAAGAACT
GCGGCAGCAGGGGGCAGAAGGTCTGCCTTCGGTGAAGACCGTACTAGTGG
GACCGAGGCTCGTCGGTGGGGTGGCGGTGGGGGTTGGATTGACGCG
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