prot_H-paniculata_contig1843.4528.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1843.4528.1
Unique Nameprot_H-paniculata_contig1843.4528.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length107
Homology
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BLAST of mRNA_H-paniculata_contig1843.4528.1 vs. uniprot
Match: D7FK73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK73_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 4.900e-12
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0 
Query:   14 HMAGTVVVWWASTGLIMMKAKAHEGPVRQLQFDATKV 50
            H  GTVVVWWASTGLIMMK+K H GP+RQLQFDATKV
Sbjct: 1382 HEDGTVVVWWASTGLIMMKSKVHSGPIRQLQFDATKV 1418
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BLAST of mRNA_H-paniculata_contig1843.4528.1 vs. uniprot
Match: F0YJ40_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJ40_AURAN)

HSP 1 Score: 54.7 bits (130), Expect = 1.240e-6
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 0 
Query:   17 GTVVVWWASTGLIMMKAKAHEGPVRQLQFDATKVVS 52
            G ++VWW  TG I+ ++KAH+GPV  LQFDAT+VVS
Sbjct:  138 GHIIVWWLQTGDILQRSKAHDGPVFDLQFDATRVVS 173
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1843.4528.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK73_ECTSI4.900e-1283.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0YJ40_AURAN1.240e-661.11Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 66..103
e-value: 2.3E-7
score: 40.5
coord: 26..63
e-value: 0.62
score: 18.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 67..102
e-value: 6.0E-6
score: 26.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 73..107
score: 12.614
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 9..107
e-value: 4.8E-23
score: 83.3
NoneNo IPR availablePANTHERPTHR19846WD40 REPEAT PROTEINcoord: 15..104
NoneNo IPR availablePANTHERPTHR19846:SF1coord: 15..104
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..31
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 32..107
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 17..107
score: 16.876
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 17..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1843contigH-paniculata_contig1843:1011..1821 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1843.4528.1mRNA_H-paniculata_contig1843.4528.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1843 996..1821 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1843.4528.1 ID=prot_H-paniculata_contig1843.4528.1|Name=mRNA_H-paniculata_contig1843.4528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MHMNIHGVSNDAKHMAGTVVVWWASTGLIMMKAKAHEGPVRQLQFDATKV
VSCSTDGGIVVTDLTTGECTMTLRGHTGTVHAVAFDRSKIISAGDDGTLR
TWEWGTK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf