mRNA_H-paniculata_contig1843.4528.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1843.4528.1
Unique NamemRNA_H-paniculata_contig1843.4528.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1843.4528.1 vs. uniprot
Match: D7FK73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK73_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 3.170e-12
Identity = 35/52 (67.31%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   10 CVMHMNIHGVSNDAKHMAGTVVVWWASTGLIMMKAKAHEGPVRQLQFDATKV 165
            CV +  +  VS    H  GTVVVWWASTGLIMMK+K H GP+RQLQFDATKV
Sbjct: 1370 CVSYGRLELVSG---HEDGTVVVWWASTGLIMMKSKVHSGPIRQLQFDATKV 1418
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BLAST of mRNA_H-paniculata_contig1843.4528.1 vs. uniprot
Match: F0YJ40_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJ40_AURAN)

HSP 1 Score: 54.3 bits (129), Expect = 2.000e-6
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   64 GTVVVWWASTGLIMMKAKAHEGPVRQLQFDATKVVS 171
            G ++VWW  TG I+ ++KAH+GPV  LQFDAT+VVS
Sbjct:  138 GHIIVWWLQTGDILQRSKAHDGPVFDLQFDATRVVS 173
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1843.4528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK73_ECTSI3.170e-1267.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0YJ40_AURAN2.000e-661.11Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1843contigH-paniculata_contig1843:996..1821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue5.5e-10
Seed eggNOG ortholog2880.D7FK73
KEGG koko:K10260,ko:K10265,ko:K10266
KEGG Pathwayko04120,map04120
KEGG ModuleM00387
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
EggNOG OGsKOG0274@1,KOG0274@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121,ko04131
Exons2
Model size336
Cds size321
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1843.4528.1prot_H-paniculata_contig1843.4528.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1843 1011..1821 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929428.9710903-UTR-H-paniculata_contig1843:995..10101622929428.9710903-UTR-H-paniculata_contig1843:995..1010Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1843 996..1010 +
1691480857.4094625-UTR-H-paniculata_contig1843:995..10101691480857.4094625-UTR-H-paniculata_contig1843:995..1010Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1843 996..1010 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929428.989373-CDS-H-paniculata_contig1843:1010..11571622929428.989373-CDS-H-paniculata_contig1843:1010..1157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1843 1011..1157 +
1691480857.4258866-CDS-H-paniculata_contig1843:1010..11571691480857.4258866-CDS-H-paniculata_contig1843:1010..1157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1843 1011..1157 +
1622929429.0113742-CDS-H-paniculata_contig1843:1647..18211622929429.0113742-CDS-H-paniculata_contig1843:1647..1821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1843 1648..1821 +
1691480857.4367664-CDS-H-paniculata_contig1843:1647..18211691480857.4367664-CDS-H-paniculata_contig1843:1647..1821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1843 1648..1821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1843.4528.1

>prot_H-paniculata_contig1843.4528.1 ID=prot_H-paniculata_contig1843.4528.1|Name=mRNA_H-paniculata_contig1843.4528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MHMNIHGVSNDAKHMAGTVVVWWASTGLIMMKAKAHEGPVRQLQFDATKV
VSCSTDGGIVVTDLTTGECTMTLRGHTGTVHAVAFDRSKIISAGDDGTLR
TWEWGTK
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mRNA from alignment at H-paniculata_contig1843:996..1821+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1843.4528.1 ID=mRNA_H-paniculata_contig1843.4528.1|Name=mRNA_H-paniculata_contig1843.4528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=826bp|location=Sequence derived from alignment at H-paniculata_contig1843:996..1821+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAACACCATGTGTGATGCACATGAACATTCACGGTGTCTCAAATGACGC
AAAACATATGGCAGGGACCGTGGTGGTATGGTGGGCCTCTACCGGTCTAA
TAATGATGAAGGCCAAGGCCCACGAAGGGCCTGTCCGGCAGCTTCAATTT
GACGCAACCAAGGTGACCACCATGATATTCAGACGCACTGTCAACCAAAG
GGCCATCGGGTTGGCGGTGCCGCGAGCTAACAGAGGCTCGCATAACTCTG
AGGAAAACCAAGAGAGGGTAATTCTCGGCAATGATTGGAACTAATTCCTT
TTGAAGCACAGAGGTTGAAACAGCGCGCTCATTGAAGCTTTTAAAATATT
CAAATGTAGCGTGTTGCTTCATAGATTGTTGTTTTTCCGATCTAGATAAT
ATCTACCTGTTACAAAGGCCCGTGGGCTCGTATCTTACTTTGCGGATCGT
GCATTGTAGTAAATAAGCATGTGTAGCAGTGAATTTGGACACTCCCACTC
CCTATGGTCCAAGGAAGCGTGTTACAGTGCGGACGGAGTGCTAGATAGAT
CCACTCGATCTCAACGCGAATAAATGCCACACGATGATCCCATACTGAAA
AAATATGGTGCTGATCTGAGAGCCTCCTTTGCCCGTCCCCTCTCCCAAAA
AGGTCGTATCTTGCAGCACGGACGGAGGGATTGTGGTGACGGACCTAACC
ACGGGAGAATGCACCATGACCCTCAGAGGACACACGGGCACCGTCCATGC
CGTTGCCTTCGACCGATCCAAAATTATCAGCGCTGGCGATGACGGCACTC
TTCGCACATGGGAATGGGGCACAAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1843:996..1821+

>mRNA_H-paniculata_contig1843.4528.1 ID=mRNA_H-paniculata_contig1843.4528.1|Name=mRNA_H-paniculata_contig1843.4528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig1843:996..1821+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACATGAACATTCACGGTGTCTCAAATGACGCAAAACATATGGCAGG
GACCGTGGTGGTATGGTGGGCCTCTACCGGTCTAATAATGATGAAGGCCA
AGGCCCACGAAGGGCCTGTCCGGCAGCTTCAATTTGACGCAACCAAGATG
CACATGAACATTCACGGTGTCTCAAATGACGCAAAACATATGGCAGGGAC
CGTGGTGGTATGGTGGGCCTCTACCGGTCTAATAATGATGAAGGCCAAGG
CCCACGAAGGGCCTGTCCGGCAGCTTCAATTTGACGCAACCAAGGTCGTA
TCTTGCAGCACGGACGGAGGGATTGTGGTGACGGACCTAACCACGGGAGA
ATGCACCATGACCCTCAGAGGACACACGGGCACCGTCCATGCCGTTGCCT
TCGACCGATCCAAAATTATCAGCGCTGGCGATGACGGCACTCTTCGCACA
TGGGAATGGGGCACAAAAGTCGTATCTTGCAGCACGGACGGAGGGATTGT
GGTGACGGACCTAACCACGGGAGAATGCACCATGACCCTCAGAGGACACA
CGGGCACCGTCCATGCCGTTGCCTTCGACCGATCCAAAATTATCAGCGCT
GGCGATGACGGCACTCTTCGCACATGGGAATGGGGCACAAAA
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