mRNA_H-paniculata_contig18419.4523.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18419.4523.1
Unique NamemRNA_H-paniculata_contig18419.4523.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18419.4523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18419contigH-paniculata_contig18419:4789..5183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size395
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18419.4523.1prot_H-paniculata_contig18419.4523.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18419 4839..5156 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929428.4136481-UTR-H-paniculata_contig18419:4788..48381622929428.4136481-UTR-H-paniculata_contig18419:4788..4838Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18419 4789..4838 +
1691480857.1753104-UTR-H-paniculata_contig18419:4788..48381691480857.1753104-UTR-H-paniculata_contig18419:4788..4838Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18419 4789..4838 +
1622929428.4375827-UTR-H-paniculata_contig18419:5156..51831622929428.4375827-UTR-H-paniculata_contig18419:5156..5183Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18419 5157..5183 +
1691480857.1906264-UTR-H-paniculata_contig18419:5156..51831691480857.1906264-UTR-H-paniculata_contig18419:5156..5183Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18419 5157..5183 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929428.4259694-CDS-H-paniculata_contig18419:4838..51561622929428.4259694-CDS-H-paniculata_contig18419:4838..5156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18419 4839..5156 +
1691480857.1834276-CDS-H-paniculata_contig18419:4838..51561691480857.1834276-CDS-H-paniculata_contig18419:4838..5156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18419 4839..5156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18419.4523.1

>prot_H-paniculata_contig18419.4523.1 ID=prot_H-paniculata_contig18419.4523.1|Name=mRNA_H-paniculata_contig18419.4523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
MKYFTPRTNTFFWRIRDKIESCSPEFQNELVYYMCLAPSRTAYDTRKSNG
QAGYLTLMCPLVLKLRRIPFFFMPYTPIIRTCPVCEMFAGHINLIDHGPT
PERVG*
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mRNA from alignment at H-paniculata_contig18419:4789..5183+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18419.4523.1 ID=mRNA_H-paniculata_contig18419.4523.1|Name=mRNA_H-paniculata_contig18419.4523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=395bp|location=Sequence derived from alignment at H-paniculata_contig18419:4789..5183+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCTTGTTGGCGAGAGCCTACATGCTTCTGGTCCACAGCAGGTGGAGGAA
ATGAAATATTTCACCCCCCGGACGAATACGTTTTTTTGGCGTATTCGCGA
CAAAATTGAAAGTTGTTCGCCTGAGTTTCAGAACGAGCTAGTGTATTATA
TGTGCCTCGCACCATCCAGAACTGCTTATGATACTCGTAAATCGAATGGA
CAAGCCGGGTACTTGACTCTTATGTGCCCGCTCGTTCTAAAACTTCGACG
AATACCCTTCTTTTTCATGCCGTATACGCCAATTATTCGTACTTGTCCGG
TGTGTGAAATGTTTGCCGGGCATATTAACCTAATCGACCACGGACCTACG
CCCGAACGGGTAGGGTAGCTCGTGAACTGAGCATGATTGGAAGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig18419:4789..5183+

>mRNA_H-paniculata_contig18419.4523.1 ID=mRNA_H-paniculata_contig18419.4523.1|Name=mRNA_H-paniculata_contig18419.4523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig18419:4789..5183+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAATATTTCACCCCCCGGACGAATACGTTTTTTTGGCGTATTCGCGA
CAAAATTGAAAGTTGTTCGCCTGAGTTTCAGAACGAGCTAGTGTATTATA
TGTGCCTCGCACCATCCAGAACTGCTTATGATACTCGTAAATCGAATGGA
CAAGCCGGGTACTTGACTCTTATGTGCCCGCTCGTTCTAAAACTTCGACG
AATACCCTTCTTTTTCATGCCGTATACGCCAATTATTCGTACTTGTCCGG
TGTGTGAAATGTTTGCCGGGCATATTAACCTAATCGACCACGGACCTACG
CCCGAACGGGTAGGGTAGATGAAATATTTCACCCCCCGGACGAATACGTT
TTTTTGGCGTATTCGCGACAAAATTGAAAGTTGTTCGCCTGAGTTTCAGA
ACGAGCTAGTGTATTATATGTGCCTCGCACCATCCAGAACTGCTTATGAT
ACTCGTAAATCGAATGGACAAGCCGGGTACTTGACTCTTATGTGCCCGCT
CGTTCTAAAACTTCGACGAATACCCTTCTTTTTCATGCCGTATACGCCAA
TTATTCGTACTTGTCCGGTGTGTGAAATGTTTGCCGGGCATATTAACCTA
ATCGACCACGGACCTACGCCCGAACGGGTAGGGTAG
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