mRNA_H-paniculata_contig18417.4522.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18417.4522.1
Unique NamemRNA_H-paniculata_contig18417.4522.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18417.4522.1 vs. uniprot
Match: D8LIW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIW9_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 5.370e-30
Identity = 66/100 (66.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:    1 QLRESLFNGAANDGGGVGRREATVDKALNEARSAPLSLQASFRRGAARVDSLLAGEGPQPIGEWEVKHVLRQSEEELKGKELASRERIENLVATVRLESA 300
            QLR+SLF  +    GG   RE  VD AL  ARSAPL +Q   RRGA R+DSLL GEGPQP+GEWEVKH LRQ EEEL+GK+LASRERIE ++ATVR E+A
Sbjct:  524 QLRDSLFKESV--AGGRSLREKAVDAALELARSAPLDMQGRVRRGAGRIDSLLGGEGPQPVGEWEVKHALRQGEEELRGKDLASRERIEEILATVRQETA 621
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18417.4522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIW9_ECTSI5.370e-3066.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18417contigH-paniculata_contig18417:3364..4782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929428.35597-CDS-H-paniculata_contig18417:3363..34831622929428.35597-CDS-H-paniculata_contig18417:3363..3483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18417 3364..3483 -
1691480857.157521-CDS-H-paniculata_contig18417:3363..34831691480857.157521-CDS-H-paniculata_contig18417:3363..3483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18417 3364..3483 -
1622929428.37535-CDS-H-paniculata_contig18417:4602..47821622929428.37535-CDS-H-paniculata_contig18417:4602..4782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18417 4603..4782 -
1691480857.167486-CDS-H-paniculata_contig18417:4602..47821691480857.167486-CDS-H-paniculata_contig18417:4602..4782Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18417 4603..4782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18417.4522.1prot_H-paniculata_contig18417.4522.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18417 3364..4782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18417.4522.1

>prot_H-paniculata_contig18417.4522.1 ID=prot_H-paniculata_contig18417.4522.1|Name=mRNA_H-paniculata_contig18417.4522.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
QLRESLFNGAANDGGGVGRREATVDKALNEARSAPLSLQASFRRGAARVD
SLLAGEGPQPIGEWEVKHVLRQSEEELKGKELASRERIENLVATVRLESA
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mRNA from alignment at H-paniculata_contig18417:3364..4782-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18417.4522.1 ID=mRNA_H-paniculata_contig18417.4522.1|Name=mRNA_H-paniculata_contig18417.4522.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1419bp|location=Sequence derived from alignment at H-paniculata_contig18417:3364..4782- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTGAGAGAATCGCTGTTCAACGGAGCTGCGAATGATGGTGGAGGGGT
TGGTAGAAGGGAGGCGACTGTGGACAAAGCGTTGAATGAAGCTCGATCGG
CGCCGCTGAGCCTGCAGGCAAGTTTCCGACGCGGAGCGGCGCGTGTAGAC
TCTCTGTTGGCGGGAGAAGGACCTCAGCCGGTGGGTTACTGTATCTCCAG
AGTTATGTACGTTTGGCCCTTAGGGGCTTAGTTTTCGCAACGATCAATAC
ATAAATCTCTTGTCGAAAGATCGCGACTACTGGTGAATAAGTCTGCAGGA
TATTAACATGTTGACTAGCCCTAGACAGCTAGTTAACGTATCTCAGGCCC
ACAAGGGCCTTGGATGACTGATTCACCTGCGTACAGCGTAAATGTGCGTC
CCGCACGACATTCAAAACTTAAAACCAGCCACCAAAGTAGGCATTGCTCT
TTCGAGAGCCAATCTCTCGCGAGGGCGTCGTTTTCGTAACACTTTTCTTT
AATATTCTAGCTCTATTCAACATCCAATCCCGTCATTCCTCAGTTTGAGA
ATGCGCGCGATCAAGGGCTTCGTATCAAGAGTATCTGTGAATTTCATTAT
TCGCCTAAATTTATTCACGTATGTTTATCTGTGAGCTATGCACCATAACA
TACTCGTGATATGAAGAACTAAACATTATACAGGAAGGGGGGGTGAGGGG
GCCATAAACAGAGAATAGGTGATACATAACAAGTTCGTCGCGTACGGTTC
GGGCGCATGCATAGTCATATTTACGAGAATACGAGGGCATGCGATCTGAC
TACAGGCGTTCCGCACCGACGTTAGTATTGGGCAGAGCGTCCCATGGCTT
TATTTCGACGATTTTGTGTTTTCAAAGCATGGCGTAGTATGCACCGCTAG
TAGTCGTTTTGTGCGTTATGAATTAGCTACGTGCAAGACGTTACCATACG
TATTGAAACGTTATTGCTTTTTCGTGGGCCACCATCTACCGATATATCAC
AGCACGTGTAGTAGATGTCATTGTCCTCTTCGCTCTCTCTATTTTCGTCG
CCGTCAGGTTGGCGTCTCACATTGCCATTCTTAGCATCCCTGGTATTCTG
TTACAGCGTGACAAGGAAATCTGTTGGTATTGTTATTGAAGGATATCTGA
ATGCGCCCAAGCAAACAAGTCGATTTATTGTAATGTACATAAAATTTGCG
CGATTTGTGTTATAAACTTGTCGTTGGTCCTGCTCTGCCCCTGCTGCGTG
TGCACCCCGCGGGCTTCGTTGTGCACAATCTGCATTATTTGCGTCGTAGA
TAGGAGAGTGGGAGGTGAAGCATGTTTTGAGGCAAAGCGAGGAAGAGCTG
AAGGGCAAAGAGCTGGCCAGTCGCGAGAGGATCGAGAATCTAGTAGCAAC
AGTCCGACTAGAGTCCGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig18417:3364..4782-

>mRNA_H-paniculata_contig18417.4522.1 ID=mRNA_H-paniculata_contig18417.4522.1|Name=mRNA_H-paniculata_contig18417.4522.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig18417:3364..4782- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTGAGAGAATCGCTGTTCAACGGAGCTGCGAATGATGGTGGAGGGGT
TGGTAGAAGGGAGGCGACTGTGGACAAAGCGTTGAATGAAGCTCGATCGG
CGCCGCTGAGCCTGCAGGCAAGTTTCCGACGCGGAGCGGCGCGTGTAGAC
TCTCTGTTGGCGGGAGAAGGACCTCAGCCGCAGCTGAGAGAATCGCTGTT
CAACGGAGCTGCGAATGATGGTGGAGGGGTTGGTAGAAGGGAGGCGACTG
TGGACAAAGCGTTGAATGAAGCTCGATCGGCGCCGCTGAGCCTGCAGGCA
AGTTTCCGACGCGGAGCGGCGCGTGTAGACTCTCTGTTGGCGGGAGAAGG
ACCTCAGCCGATAGGAGAGTGGGAGGTGAAGCATGTTTTGAGGCAAAGCG
AGGAAGAGCTGAAGGGCAAAGAGCTGGCCAGTCGCGAGAGGATCGAGAAT
CTAGTAGCAACAGTCCGACTAGAGTCCGCAATAGGAGAGTGGGAGGTGAA
GCATGTTTTGAGGCAAAGCGAGGAAGAGCTGAAGGGCAAAGAGCTGGCCA
GTCGCGAGAGGATCGAGAATCTAGTAGCAACAGTCCGACTAGAGTCCGCA
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