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Homology
BLAST of mRNA_H-paniculata_contig18410.4520.1 vs. uniprot
Match: A0A6H5JP45_9PHAE (BPL/LPL catalytic domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JP45_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 2.020e-6 Identity = 34/73 (46.58%), Postives = 39/73 (53.42%), Query Frame = 2
Query: 218 AARDRFRVEEASISDV-PGFEDSGED--------------SGGWMERCRTKFVGLDGKPLPVPEGGHPTMTVS 391
AA + F +EEASISDV P DS WME CRTKFVGLDGK +P P GGH T++
Sbjct: 215 AAGEHFVLEEASISDVLPDNHDSSNXXXXXXXXXXXXXXXGSAWMEACRTKFVGLDGKAVPPPPGGHDDTTLA 287
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 63.9 |
| Seed ortholog evalue | 5.5e-08 |
| Seed eggNOG ortholog | 2880.D8LFX0 |
| KEGG rclass | RC00043,RC00070,RC00090,RC00992,RC02896 |
| KEGG ko | ko:K03800 |
| KEGG Reaction | R07770,R07771,R11143 |
| KEGG Pathway | ko00785,ko01100,map00785,map01100 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | lipoate-protein ligase activity |
| EggNOG OGs | COG0095@1,KOG3159@2759 |
| Ec32 ortholog description | Biotin/lipoate A/B protein ligase family |
| Ec32 ortholog | Ec-05_005190.1 |
| EC | 6.3.1.20 |
| COG Functional cat. | H |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000 |
| Exons | 2 |
| Model size | 866 |
| Cds size | 345 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18410.4520.1 >prot_H-paniculata_contig18410.4520.1 ID=prot_H-paniculata_contig18410.4520.1|Name=mRNA_H-paniculata_contig18410.4520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MQQYSLFPLWAGATLRHNGVCAVQLAATAQWNQRVYCSLPAALLLHQAHG
GTAEAARDRFRVEEASISDVPGFEDSGEDSGGWMERCRTKFVGLDGKPLP
VPEGGHPTMTVSSS* back to topmRNA from alignment at H-paniculata_contig18410:2212..4267- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig18410.4520.1 ID=mRNA_H-paniculata_contig18410.4520.1|Name=mRNA_H-paniculata_contig18410.4520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2056bp|location=Sequence derived from alignment at H-paniculata_contig18410:2212..4267- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCGTTGTATGCTGCAGAAATGGTGCTACATGCAGCAGTATACCAATTT
GCTGCATGCAGCAGTACTCTCTATTTCCTTTGTGGGCGGGCGCAACTCTA
CGGCATAATGGTGTGTGCGCTGTCCAGCTGGCTGCCACCGCTCAATGGAA
TCAACGCGTGTACTGCAGTCTGCCAGCTGCACTACTTTTACATCAAGCAC
ACGGTGGTACGGCTGCTGTGTCAGTCCTTGACTTACGTGAGCATGATAAG
AAAAGCCGATACCCTTTTGCACCTAGCGTCGACATTTGATAATCTAAGTT
CATGTACATAACCCCTTTTTTTATCATATGTTTGTCGACATATGGGTCTG
ATCGTAACTCGACCGAAGCGATTGTCTCCGTCGAAATTCGGTACCTCCCG
TCCCCTCATCTTTTTCGACACGGGACAGTCAAAAACCACGCGTCGAAATT
TACAGCTATATAAGCTTGTTGATCTGTAACAGTGATGGCCGAATCGGAAT
ACTTTCAACCCTGCGCTCGAGTTATCACTACAATCGACTCAGTAGACTGC
TGTGCTTGGTGCCCACGTGTAGGGATACCAAGCTGTGCTCGTAGGCCATA
GGTATTGAGTCAAAGAGGAGAAAACGGCGAACTGCATGGACGGACGTAGC
CGTGGTTCTAGCACTACAGCACTGATACCCTAGAGAAGAATATATAGGTG
GGGAAGACGAAATGATTTTGTTTTTGGGAGTCCTTCTACAGCTAAGCTAA
CCACTGGTCTGCATGTGGTATGTAGTTGCACCCGCTCCCCTTTCTAAACA
TATAAAAAGCGTTTTGAAGTAGCACTTAGTTGGTTTTGCGGTGCGCTGTT
GTATGCCCTCACTGATTCTGTTCTGTTAAAGGCAATGTAGGGATGTTTGG
GCGAATGCCTAAATGTGGAAGCAGCGGAATAGGTTTTTGCCTCAGCCTTC
CGGGGGTTAAAAAACAAAAAAAATGCCCTCACTGATTTTACAAAAACTAG
ACGCATACGCTTCAATTTTCCGGTTTTACTCACCTGATGTGCCTGTTTGT
TCTGGTTTTGCTGATGGATGGATGTACACAGCTCAAGCATCATTTCTACT
ACACGACCTTAGCAGGAGTGCAAAGACGATTTCACATGTCTGATTTTTGG
CTGCCCTGCTTAGAATATCCGGGAACAGTATACCTTATTTGCCACGCGGA
GTTTTCTACAGCGATGAGGAGTTGTTCTGTGCGACGTAAACAAAACGCCG
AAAACTTCAGATCGTAGAATTTGATATGTCGGGCGTGTGAAATATTGACT
ATTGTACTGTATATCGTGAGAAGAAAAGAACGTAACCCCCCCATCTAACC
CCCTCCCCCGCCCACCCGTCGGCTCTCATATCCCCTTATCCTCATTCGAG
GCAGGAGGCCGCCAGAGACAGGTTTCGAGTGGAGGAGGCATCTATTTCAG
ATGTACCAGGCTTTGAGGATTCGGGCGAGGATAGCGGAGGGTGGATGGAG
CGTTGTCGTACCAAGTTCGTCGGGTTAGATGGCAAACCTTTGCCTGTCCC
CGAGGGCGGGCACCCGACCATGACTGTATCCTCTTCGTGATGTATGCTTG
TTGATGTTCTGGATCTCGTACCGTCCAAAAGATTCACGTATTTGCTGGCC
ACAGTGGTGAACAATGACGAATACGTCGATATAGTGTAGTGGTTCATGAG
CAGCTAGCTCTCGGCAGTGGGTTCATGCATTTCAAGTGCCTACTAGTAGG
CCATTTGTTTGTCGCTTTACGAGCCTTTCCCCCTTGGATTTAGAGACTTT
TCAGCCAACGGGAGGGGAGGAAATCTGTACTTTCGATGACAGGTTGTCTT
GGTTTAAGTCTGAGATCATTTCGGAACAGTTGTTTTTGGGCCGTAGCGGA
TTCAATTTCACCACTTGGTCACATGCAAGTTGTCACCGTGTTGCCCCTGC
CCCCTCTGTCGAAATGGCTCTTAGCACAAGTGAGACGGGCAGTATATTTA
TCGTGCCGTTTCCCAACATGCAAATAATATATAAGCTCCGCATAACTGAT
CAAGAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig18410:2212..4267- >mRNA_H-paniculata_contig18410.4520.1 ID=mRNA_H-paniculata_contig18410.4520.1|Name=mRNA_H-paniculata_contig18410.4520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig18410:2212..4267- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCAGTACTCTCTATTTCCTTTGTGGGCGGGCGCAACTCTACGGCA
TAATGGTGTGTGCGCTGTCCAGCTGGCTGCCACCGCTCAATGGAATCAAC
GCGTGTACTGCAGTCTGCCAGCTGCACTACTTTTACATCAAGCACACGGT
GGTACGGCTATGCAGCAGTACTCTCTATTTCCTTTGTGGGCGGGCGCAAC
TCTACGGCATAATGGTGTGTGCGCTGTCCAGCTGGCTGCCACCGCTCAAT
GGAATCAACGCGTGTACTGCAGTCTGCCAGCTGCACTACTTTTACATCAA
GCACACGGTGGTACGGCTGAGGCCGCCAGAGACAGGTTTCGAGTGGAGGA
GGCATCTATTTCAGATGTACCAGGCTTTGAGGATTCGGGCGAGGATAGCG
GAGGGTGGATGGAGCGTTGTCGTACCAAGTTCGTCGGGTTAGATGGCAAA
CCTTTGCCTGTCCCCGAGGGCGGGCACCCGACCATGACTGTATCCTCTTC
GTGAGAGGCCGCCAGAGACAGGTTTCGAGTGGAGGAGGCATCTATTTCAG
ATGTACCAGGCTTTGAGGATTCGGGCGAGGATAGCGGAGGGTGGATGGAG
CGTTGTCGTACCAAGTTCGTCGGGTTAGATGGCAAACCTTTGCCTGTCCC
CGAGGGCGGGCACCCGACCATGACTGTATCCTCTTCGTGA back to top
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