mRNA_H-paniculata_contig1841.4519.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 2.060e-19 Identity = 44/108 (40.74%), Postives = 69/108 (63.89%), Query Frame = 1
Query: 1 RSTTGTMFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGL-QLTSCEVRSDNRGALHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDHV 321
+S TG+M F A LI+FSSR+Q+I A ++E E + AK G+Y + ELG QL ++ +D R AL L +N +S+RS+HI++R+ AL+ W+ ++ +DHV
Sbjct: 744 KSVTGSMVFLAGDLIYFSSRVQRIVAQSSSEGEFFTINSTAKHGVYFSSLMGELGWSQLLKFKLLTDTRSALSLFSNGTFSNRSRHISVRYEALRGWVSSSRIALDHV 851
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 2.030e-18 Identity = 43/107 (40.19%), Postives = 69/107 (64.49%), Query Frame = 1
Query: 1 RSTTGTMFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDH 318
RSTTG +FF GLI + ++ Q + A T EAEL AL+ A++ +Y+ E+G + S + SD+ GAL +A+N+ +SSR+KHIA+RF L++ + H++ + H
Sbjct: 159 RSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHH 265
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 8.470e-18 Identity = 43/107 (40.19%), Postives = 69/107 (64.49%), Query Frame = 1
Query: 1 RSTTGTMFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDH 318
RSTTG +FF GLI + ++ Q + A T EAEL AL+ A++ +Y+ E+G + S + SD+ GAL +A+N+ +SSR+KHIA+RF L++ + H++ + H
Sbjct: 596 RSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHH 702
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Match: A0A6H5K4S9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S9_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 8.590e-18 Identity = 43/107 (40.19%), Postives = 69/107 (64.49%), Query Frame = 1
Query: 1 RSTTGTMFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDH 318
RSTTG +FF GLI + ++ Q + A T EAEL AL+ A++ +Y+ E+G + S + SD+ GAL +A+N+ +SSR+KHIA+RF L++ + H++ + H
Sbjct: 755 RSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHH 861
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Match: A0A2N9GG47_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GG47_FAGSY) HSP 1 Score: 84.0 bits (206), Expect = 1.420e-16 Identity = 42/107 (39.25%), Postives = 68/107 (63.55%), Query Frame = 1
Query: 1 RSTTGTMFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGLQLTSCEVRSDNRGALHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDHV 321
RSTTG +F + G I + S LQ I A T EAE +A+AK AK+ ++L G+ +ELGL ++ D++ A++LA N Y +R+KHI +RF +++ I ++++ V
Sbjct: 900 RSTTGYVFTLSGGPICWKSTLQSIVAMSTIEAEYMAVAKAAKEALWLKGLVKELGLNQGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKV 1006
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Match: A0A6H5JN55_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN55_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 2.600e-16 Identity = 42/107 (39.25%), Postives = 67/107 (62.62%), Query Frame = 1
Query: 1 RSTTGTMFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDH 318
RS TG +F GLI + ++ Q + A T EAEL AL+ A++ +Y+ E+G + S + SD+ GAL +A+N+ +SSR+KHIA+RF L + +RH++ + H
Sbjct: 673 RSPTGYLFSLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLGELTKRHRITLHH 779
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Match: A0A4Y1R6X5_PRUDU (Toll-Interleukin-Resistance domain family protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R6X5_PRUDU) HSP 1 Score: 79.7 bits (195), Expect = 3.950e-16 Identity = 39/107 (36.45%), Postives = 66/107 (61.68%), Query Frame = 1
Query: 1 RSTTGTMFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGLQLTSCEVRSDNRGALHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDHV 321
RSTTG +F + + + S+LQKI TTEAE +A+ + +K+ I+L G+ ELG + + SD++ A+HLA NS + SR+KHI +R+ ++ + L ++ +
Sbjct: 70 RSTTGYIFTVGNTAVSWMSQLQKIVTLSTTEAEYVAVTEASKEMIWLQGLLTELGFKQEKNVLHSDSQSAIHLAKNSAFHSRTKHIGLRYHFIRSLLEDEVLTLEKI 176
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Match: A0A6H5KY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY35_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 4.720e-16 Identity = 42/105 (40.00%), Postives = 66/105 (62.86%), Query Frame = 1
Query: 1 RSTTGTMFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHIAIRFAALKDWIRRHQLII 312
RSTTG MFF GLI + ++ Q + A T EAEL AL A++ +Y+ E+G + S + SD+ GAL +A+N+ +SSR+KHIA+RF ++ + H++ +
Sbjct: 456 RSTTGYMFFLGGGLISYGAKAQTLAAQNTVEAELQALGFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFPRELTKGHRITL 560
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Match: A0A2K3M3M2_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3M3M2_TRIPR) HSP 1 Score: 81.3 bits (199), Expect = 8.120e-16 Identity = 41/107 (38.32%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 1 RSTTGTMFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGLQLTSCEVRSDNRGALHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDHV 321
RSTTG +F G + + SR+QKI A TTEAE +A+ + +K+ I+L G+ ELG + SD++ A+HLA NS + SR+KHI +R+ ++ + L + +
Sbjct: 241 RSTTGYIFTVGTGAVSWISRIQKIVALSTTEAEYVAVTEASKELIWLQGLLTELGFIQEKSVLYSDSQSAIHLAKNSAFHSRTKHIGLRYHFIRSLLEDEVLTLSKI 347
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Match: A0A0L9UYY9_PHAAN (Uncharacterized protein n=3 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9UYY9_PHAAN) HSP 1 Score: 79.0 bits (193), Expect = 1.050e-15 Identity = 41/110 (37.27%), Postives = 66/110 (60.00%), Query Frame = 1
Query: 1 RSTTGTMFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGLQLTSCEVRSDNRGALHLAANSNYSSRSKHIAIRFAALKDWIRRHQLIIDHVLIS 330
RSTTG +F + + S++QKI A TTEAE +A+ + +K+ I+L G+ ELG + SD++ A+HLA NS + SR+KHI +R+ ++ + L + +L S
Sbjct: 86 RSTTGYIFTVGTTAVSWMSQIQKIVALSTTEAEYVAVTEASKELIWLQGLLTELGFIQEKTVLHSDSQSAIHLAKNSTFHSRTKHIDLRYHFIRSLLEDEVLTLRKILGS 195 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1841.4519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1841.4519.1 >prot_H-paniculata_contig1841.4519.1 ID=prot_H-paniculata_contig1841.4519.1|Name=mRNA_H-paniculata_contig1841.4519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp MFFFADGLIHFSSRLQKITATGTTEAELIALAKCAKQGIYLLGICRELGLback to top mRNA from alignment at H-paniculata_contig1841:23547..23879- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1841.4519.1 ID=mRNA_H-paniculata_contig1841.4519.1|Name=mRNA_H-paniculata_contig1841.4519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at H-paniculata_contig1841:23547..23879- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1841:23547..23879- >mRNA_H-paniculata_contig1841.4519.1 ID=mRNA_H-paniculata_contig1841.4519.1|Name=mRNA_H-paniculata_contig1841.4519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig1841:23547..23879- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |