mRNA_H-paniculata_contig1841.4517.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1841.4517.1 vs. uniprot
Match: D7G1M2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M2_ECTSI) HSP 1 Score: 252 bits (643), Expect = 1.810e-76 Identity = 136/214 (63.55%), Postives = 159/214 (74.30%), Query Frame = 1
Query: 829 EVAYDALTYAGLMTAGPFFVSQKDLGFGSPSVILDMDKLACYIAEKILDMDLESWRRRGGDTSV-PNAVGNSRPGVGVEERNFSQDEDSVTHLAALRVQDMTLAAARVALRKIRTEFGASDDIPADASLVVLCSATTNALYLGELLLPRRAMNTLFILDFADSVVPDDEMGKKLRSSDA-GEIANDLGLLPSGRGSVPLVISGDALRAWAAQED 1464
VA ALTYAGLMTAGPFFVS+KDLGFGSPS++LDMDK+ CY+AEKILD+DL+ WRRRGGD + VGN++PGVG+EERNFSQDE SV+H AALRVQDMTLAA R ALRK+R E S D S+V+L SATTNA +LGELLLP RA+ TL LDF+ V D +G++L DA G LGLLP G S P+VI+GDAL W Q D
Sbjct: 12 RVAMTALTYAGLMTAGPFFVSRKDLGFGSPSLVLDMDKMGCYVAEKILDIDLDIWRRRGGDEAAGAGTVGNNKPGVGIEERNFSQDERSVSHSAALRVQDMTLAAGRAALRKLRAELRHSGDGEGSGSVVILASATTNAQHLGELLLPVRAIETLLSLDFSRPVKTDVGLGQQLAVGDAAGAAVEGLGLLPGG--SSPIVITGDALEDWLVQPD 223
BLAST of mRNA_H-paniculata_contig1841.4517.1 vs. uniprot
Match: D7G1M1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M1_ECTSI) HSP 1 Score: 176 bits (447), Expect = 5.010e-48 Identity = 101/166 (60.84%), Postives = 121/166 (72.89%), Query Frame = 1
Query: 391 AAQGEAAAVAGLRELRLQGDDPRASTQSSLKVLVDGVAAAEGQELLITEASVILQRCPRLAEAAEAGTLSAALAAAATSTPRGSSEYLLEGLEREVVGELYTAWFVAVKKWRQKALAVEKYRNTNPTANAAVYTYMVNCCLRQGMWEVAYDALTYAGLMTAGPFFV 888
AA+GE+ A GLR LR Q D+ ++Q+ + D + +GQELL TEASVILQRCPRLAEAA+AG L A L+++A + G S++LLE LE+EVV EL T W V+VKKWRQKALAVEKYR+TNPTANA VYTYM NCC RQGMWEVAYD GL P F+
Sbjct: 44 AAEGESRA--GLRALRKQIDEGAPASQTIGTIANDVIV--DGQELLTTEASVILQRCPRLAEAAKAGELLAGLSSSANTRAGGESDFLLENLEKEVVAELDTPWDVSVKKWRQKALAVEKYRSTNPTANAVVYTYMTNCCCRQGMWEVAYDG----GLSCLAPRFL 201
BLAST of mRNA_H-paniculata_contig1841.4517.1 vs. uniprot
Match: A0A835YY85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY85_9STRA) HSP 1 Score: 119 bits (299), Expect = 1.250e-26 Identity = 84/238 (35.29%), Postives = 119/238 (50.00%), Query Frame = 1
Query: 619 ATSTPRGSSEYLLEGLEREVVGELYTAWFVAVKKWRQKALAVEKYRNTNPTANAAVYTYMVNCCLRQGMWEVAYDALTYAGLMTAGPFFVSQ-KDLGFGSPSVILDMDKLACYIAEKILDMDLESWRRRGGDTSVPNAVGNSRPGVGVEERNFSQDEDSVTHLAALRVQDMTLAAARVALRKIRTEFGASDDIPADASLVVLCSATTNALYLGELLLPRRAMNTLFILDFADSVVPDD 1329
A + PR S+ E +V G + T + + +ALAVEKYR TNP A +Y+YM N C+ QGM +VA +ALTYAG+ AGPFFV+ LG G+ + +L+ D+++ YIAE Q+++S +H +ALRVQDMTLAA RVALR++ + A LV+L S + L E+LLP + L +LD + D
Sbjct: 46 AAAAPRASALLSASLSEEDVFGAVAT-----LDADKSQALAVEKYRCTNPQYVAGIYSYMANTCIYQGMPDVANEALTYAGMPPAGPFFVTAGTKLGDGTTATVLNCDRMSAYIAE--------------------------------------QNDESTSHESALRVQDMTLAAVRVALRQLLPKLQAGGQYEGQ-DLVILASCRRGSQPLQEILLPVNRIKLLLMLDLVPAFTNQD 239
BLAST of mRNA_H-paniculata_contig1841.4517.1 vs. uniprot
Match: A0A0G4E8S9_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4E8S9_VITBC) HSP 1 Score: 119 bits (298), Expect = 1.700e-26 Identity = 75/182 (41.21%), Postives = 105/182 (57.69%), Query Frame = 1
Query: 634 RGSSEY-LLEGLEREVVGELYTAWFVAVKKWRQKAL-AVEKYRNTNPTANAAVYTYMVNCCLRQGMWEVAYDALTYAGLMTAGPFFVSQKD-LGFGSPS--VILDMDKLACYIAEKILDMDLESWRRRGGDTSVPNAVGNSRPGVGVEERNFSQDEDSVTHLAALRVQDMTLAAARVALRKI 1164
RGS + +++G+ REV E T W AV++WR+K + KYR TNP A VYT+MVN + G WE A DALTYAGL+ AGPFFV G +P + +D+LA Y+AE +LD+D+ S +R G + G+EE + Q +++ + A V+DM AAARV LR +
Sbjct: 29 RGSVDATVVDGVLREV--EKPTGWEDAVRRWRRKTQGSAFKYRITNPVGTAGVYTWMVNVLVHHGQWETARDALTYAGLIPAGPFFVKPASAFGLSAPGDPPVYHLDRLALYVAESMLDVDIGSGQRDG-----------EKRVTGLEELHCGQMDEAASVEGAAAVKDMAYAAARVGLRDL 197 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1841.4517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1841.4517.1 >prot_H-paniculata_contig1841.4517.1 ID=prot_H-paniculata_contig1841.4517.1|Name=mRNA_H-paniculata_contig1841.4517.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=482bp MLPAVQKSMRHRSIFLTLGLCRLLIVTVTVLIINTPSSKLCTSDALVVNWback to top mRNA from alignment at H-paniculata_contig1841:431..14756- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1841.4517.1 ID=mRNA_H-paniculata_contig1841.4517.1|Name=mRNA_H-paniculata_contig1841.4517.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=14326bp|location=Sequence derived from alignment at H-paniculata_contig1841:431..14756- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1841:431..14756- >mRNA_H-paniculata_contig1841.4517.1 ID=mRNA_H-paniculata_contig1841.4517.1|Name=mRNA_H-paniculata_contig1841.4517.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2892bp|location=Sequence derived from alignment at H-paniculata_contig1841:431..14756- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |