mRNA_H-paniculata_contig18406.4515.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18406.4515.1
Unique NamemRNA_H-paniculata_contig18406.4515.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18406.4515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18406contigH-paniculata_contig18406:124..1941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size661
Cds size570
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18406.4515.1prot_H-paniculata_contig18406.4515.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18406 124..1851 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929427.5963876-CDS-H-paniculata_contig18406:123..4261622929427.5963876-CDS-H-paniculata_contig18406:123..426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18406 124..426 -
1691480856.876545-CDS-H-paniculata_contig18406:123..4261691480856.876545-CDS-H-paniculata_contig18406:123..426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18406 124..426 -
1622929427.6196775-CDS-H-paniculata_contig18406:956..10491622929427.6196775-CDS-H-paniculata_contig18406:956..1049Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18406 957..1049 -
1691480856.8858173-CDS-H-paniculata_contig18406:956..10491691480856.8858173-CDS-H-paniculata_contig18406:956..1049Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18406 957..1049 -
1622929427.6326802-CDS-H-paniculata_contig18406:1677..18511622929427.6326802-CDS-H-paniculata_contig18406:1677..1851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18406 1678..1851 -
1691480856.8942916-CDS-H-paniculata_contig18406:1677..18511691480856.8942916-CDS-H-paniculata_contig18406:1677..1851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18406 1678..1851 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929427.6611407-UTR-H-paniculata_contig18406:1851..19411622929427.6611407-UTR-H-paniculata_contig18406:1851..1941Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18406 1852..1941 -
1691480856.903121-UTR-H-paniculata_contig18406:1851..19411691480856.903121-UTR-H-paniculata_contig18406:1851..1941Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18406 1852..1941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18406.4515.1

>prot_H-paniculata_contig18406.4515.1 ID=prot_H-paniculata_contig18406.4515.1|Name=mRNA_H-paniculata_contig18406.4515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
MNLLCVSFSPNEQIVRFMGKGQVTIFGIDPVYENVQFVVGPLATVVFVGR
TILFERGEGSTEPIFIVEGDGVLSFDMGGSRDIKKKGRVVDKSALVKKSP
RGFFVLTNKAQVYATDTFLSVQRSRPPHGTEAGDLVHDSTTHAELLDVSA
TTATSSSPREDMATTAANEPDSTSTVTVRTTTLDVSVMAK
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mRNA from alignment at H-paniculata_contig18406:124..1941-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18406.4515.1 ID=mRNA_H-paniculata_contig18406.4515.1|Name=mRNA_H-paniculata_contig18406.4515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1818bp|location=Sequence derived from alignment at H-paniculata_contig18406:124..1941- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACATACTGTTCTCCTCCGATCTTGTGAAGAACGGGGGGCTCAAGTAAAT
GTGATGAAAGCCAGGGACGGGAAACAAGTGCGATCCGATAATGAATCTCC
TCTGTGTGTCTTTCTCTCCCAACGAGCAGATCGTGCGCTTCATGGGCAAA
GGACAGGTTACGATCTTTGGGATAGATCCAGTCTACGAAAACGTGCAATT
CGTGGTCGGGCCTCTGGCGACAGTCGTATTCGTGGGCCGTACAATCCTGT
TCGAGCGCGGCGAGGTCAGTTGAACGAATCCATAGTACACTTGACTTGTA
GAAAAGTCGCAACGCGTTTTTGTTCATTGTGGCTCTAGGCCCGCTGTGTC
GTGATGTATCTCTTGGGTTGCCGTAGCCAGGCTCTCGTTCGGTGATGATA
ATGAACGTCTAGCACGTACCCGTGTGACAAGGTATATTATGTGTTCTGAT
GGCCGCCACGGAGCTTTCTGGTTTCATGCATATGTGCTATGCACTTTTAT
GCAAGGCGAGAAAACGGCGGTCACTCGCAGCCATGAGAGGTCGATTTTGT
TCCAAGTGTGAGCAACTGGCGTTCCAGGATTCGAGGTTGGGTTTTCGCCC
CGTTTCACCACGCGTGTCTGTGTGCAAGACGTGATGGGACAGCGGTGAGC
TGTACTGTACAAATTTCCTGCTTGGCCCCGCTCGCTAAACTGGTTGTGCA
ACACGCTCCAACGATCCCACGACTGTTCGCCGCTGACTTGGAAAGCCTAC
AGCGTAGTAGTGGTGGGTACAGGAAACAATCGAATCGCCGTGGTATTTTT
GCTCCCGTTCCAGGACGCCGAAGTTGGCTAGGCGTTTCCTCTCACTCCCC
CGCCTGCCCCACAACGTTCCTGTGCTACTACATGTAATACAGGGGTCAAC
CGAGCCGATATTCATCGTAGAAGGTGACGGTGTTCTATCTTTCGATATGG
GTGGAAGCCGCGACATCAAGAAGAAAGGCAGAGTGGTGAGAAAACACGGT
AGTTGATGTGTTTCCGAATTGGTCCCATGTCGTGTGTTGTTCGAGAATGT
GGTATTTTTCTTTTCGTCGTTTCGAGATTCATGGAAAATATCCTCTTGCA
TTCCCCGTGAGAGAGGTTGTGTCAACGGCTTGGTTTTCGGTGGATGTGAC
GAAGAACCCTTGTGGTGCACTGGTCGTACTAGTTGACTGATTGGTTATGA
AGTACGACATGTTGGTGTGCTTTCGCATGTGTTGGGTGAGGGTGGGTGTT
GCTGGTAGTGTGCAGTTATTTGTGTCGATACACTGGCGATCGGCTGTTCG
CCACCGTGGCACTTTAGTGTTGCAAATGATGGGAGTTTCGGCTTAGAGCT
GGCTGATGAATTGCTACAGTATCTACGCACACACGTACATTGGGCATATC
ATGGCAAATAGCCTGCTGTATTCCTGTCTGGAGTCGCCCCAATGCTAACC
CGCACCGTCCCCCTTTTTACCGCTCTTTTCCGTTCCGTTCCATCGCGACC
TTACTGTTGCCTCAGGTAGACAAAAGCGCTCTGGTGAAGAAGTCGCCGAG
AGGCTTCTTTGTGTTAACAAACAAAGCTCAAGTATACGCCACGGATACCT
TCCTATCCGTGCAACGCTCACGGCCGCCGCACGGCACTGAAGCAGGTGAT
CTCGTCCACGACAGCACGACTCATGCGGAGCTGTTGGACGTTAGTGCAAC
CACGGCTACGTCGTCCTCACCACGTGAGGACATGGCTACGACTGCCGCCA
ACGAGCCAGACTCCACAAGTACTGTCACTGTCCGGACCACCACGTTGGAC
GTCAGTGTAATGGCGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig18406:124..1941-

>mRNA_H-paniculata_contig18406.4515.1 ID=mRNA_H-paniculata_contig18406.4515.1|Name=mRNA_H-paniculata_contig18406.4515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at H-paniculata_contig18406:124..1941- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATCTCCTCTGTGTGTCTTTCTCTCCCAACGAGCAGATCGTGCGCTT
CATGGGCAAAGGACAGGTTACGATCTTTGGGATAGATCCAGTCTACGAAA
ACGTGCAATTCGTGGTCGGGCCTCTGGCGACAGTCGTATTCGTGGGCCGT
ACAATCCTGTTCGAGCGCGGCGAGATGAATCTCCTCTGTGTGTCTTTCTC
TCCCAACGAGCAGATCGTGCGCTTCATGGGCAAAGGACAGGTTACGATCT
TTGGGATAGATCCAGTCTACGAAAACGTGCAATTCGTGGTCGGGCCTCTG
GCGACAGTCGTATTCGTGGGCCGTACAATCCTGTTCGAGCGCGGCGAGGG
GTCAACCGAGCCGATATTCATCGTAGAAGGTGACGGTGTTCTATCTTTCG
ATATGGGTGGAAGCCGCGACATCAAGAAGAAAGGCAGAGTGGGGTCAACC
GAGCCGATATTCATCGTAGAAGGTGACGGTGTTCTATCTTTCGATATGGG
TGGAAGCCGCGACATCAAGAAGAAAGGCAGAGTGGTAGACAAAAGCGCTC
TGGTGAAGAAGTCGCCGAGAGGCTTCTTTGTGTTAACAAACAAAGCTCAA
GTATACGCCACGGATACCTTCCTATCCGTGCAACGCTCACGGCCGCCGCA
CGGCACTGAAGCAGGTGATCTCGTCCACGACAGCACGACTCATGCGGAGC
TGTTGGACGTTAGTGCAACCACGGCTACGTCGTCCTCACCACGTGAGGAC
ATGGCTACGACTGCCGCCAACGAGCCAGACTCCACAAGTACTGTCACTGT
CCGGACCACCACGTTGGACGTCAGTGTAATGGCGAAGGTAGACAAAAGCG
CTCTGGTGAAGAAGTCGCCGAGAGGCTTCTTTGTGTTAACAAACAAAGCT
CAAGTATACGCCACGGATACCTTCCTATCCGTGCAACGCTCACGGCCGCC
GCACGGCACTGAAGCAGGTGATCTCGTCCACGACAGCACGACTCATGCGG
AGCTGTTGGACGTTAGTGCAACCACGGCTACGTCGTCCTCACCACGTGAG
GACATGGCTACGACTGCCGCCAACGAGCCAGACTCCACAAGTACTGTCAC
TGTCCGGACCACCACGTTGGACGTCAGTGTAATGGCGAAG
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