mRNA_H-paniculata_contig18404.4514.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18404.4514.1
Unique NamemRNA_H-paniculata_contig18404.4514.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18404.4514.1 vs. uniprot
Match: J3LC73_ORYBR (Uncharacterized protein n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3LC73_ORYBR)

HSP 1 Score: 71.6 bits (174), Expect = 8.190e-13
Identity = 33/82 (40.24%), Postives = 55/82 (67.07%), Query Frame = 1
Query:    1 VKLVTQPAQSPDLNINDLGFFASLKSRRY----GTVDDLVDGVKSMYDAYDVDTLERVWQSLFKRYNQVLRAMGGNDFEIEH 234
            ++++ QP  SPD+N+ DLGFFASL+S+ Y      +D+L+  V+  Y+ YD + + RV+ +L   + QV++A GGN ++I H
Sbjct:  479 IRIMNQPPNSPDMNVLDLGFFASLQSKTYLRNCSNMDELISNVEEEYNGYDSNLVNRVFLTLQSCFIQVMKADGGNGYKIPH 560          
BLAST of mRNA_H-paniculata_contig18404.4514.1 vs. uniprot
Match: A0A6G0X8U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8U9_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.510e-12
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 1
Query:    1 VKLVTQPAQSPDLNINDLGFFASLKSRRYG----TVDDLVDGVKSMYDAYDVDTLERVWQSLFKRYNQVLRAMGGNDFEIEH 234
            +KLVTQPA SPDLNI DLGFFA++++ +Y     T+D+ +D V   +     D L+ VW SL +R   ++   G N  ++EH
Sbjct:  301 IKLVTQPANSPDLNILDLGFFAAIQTLQYRKCPKTIDEFLDAVHESFHELKSDCLDSVWLSLHRRMATIIDHYGDNTMKLEH 382          
BLAST of mRNA_H-paniculata_contig18404.4514.1 vs. uniprot
Match: A0A6G0XDP2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XDP2_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.820e-12
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    7 LVTQPAQSPDLNINDLGFFASLKSRRYG----TVDDLVDGVKSMYDAYDVDTLERVWQSLFKRYNQVLRAMGGNDFEIEH 234
            +  QP  SPD N+ DLGFFAS++S +Y     +VD+LV  V   +D Y +  L ++WQSL     ++++A GGNDF++ H
Sbjct:   72 IAPQPPNSPDTNVLDLGFFASIQSLQYKHVPRSVDELVSCVMLEFDKYSMAKLSKIWQSLQLVLLEIVKAKGGNDFKLPH 151          
BLAST of mRNA_H-paniculata_contig18404.4514.1 vs. uniprot
Match: UPI00053F7236 (uncharacterized protein LOC104908485 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7236)

HSP 1 Score: 69.7 bits (169), Expect = 1.870e-12
Identity = 31/82 (37.80%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    1 VKLVTQPAQSPDLNINDLGFFASLKSRRYGT----VDDLVDGVKSMYDAYDVDTLERVWQSLFKRYNQVLRAMGGNDFEIEH 234
            +KL+ QPAQSPDLN+ DLGFF ++++  Y T    +D+L++ V+  YD +D + ++  W  L     ++L+  GGN+++  H
Sbjct:  155 IKLIQQPAQSPDLNVLDLGFFRAIQALMYQTFPKNIDELIENVQDAYDKFDPNVVKYTWLKLHWVMVEILKVKGGNNYKNPH 236          
BLAST of mRNA_H-paniculata_contig18404.4514.1 vs. uniprot
Match: A0A7S2FC44_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FC44_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.030e-12
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    1 VKLVTQPAQSPDLNINDLGFFASLKSRRYG-----TVDDLVDGVKSMYDAYDVDTLERVWQSLFKRYNQVLRAMGGNDFEIE 231
            +K+ TQPAQSPDLN+NDLGFF SLK          +V++++  ++  Y+    D L+R++ SL   Y  +L+  G NDF  E
Sbjct:   60 LKVTTQPAQSPDLNVNDLGFFRSLKCAATNVAEAFSVEEMIKYIRQAYEEMPADKLDRMFMSLINNYRLLLKHDGDNDFSQE 141          
BLAST of mRNA_H-paniculata_contig18404.4514.1 vs. uniprot
Match: UPI0019D5EA5F (uncharacterized protein LOC120691778 isoform X2 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5EA5F)

HSP 1 Score: 68.6 bits (166), Expect = 4.410e-12
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    1 VKLVTQPAQSPDLNINDLGFFASLKS----RRYGTVDDLVDGVKSMYDAYDVDTLERVWQSLFKRYNQVLRAMGGNDFEIEH 234
            ++L+ QP  SPDLN+ DLGFFASL+S    R    +DDL+D V+  +D YD  TL R + +L     +V++  GGN ++I H
Sbjct:  145 IRLINQPTNSPDLNVLDLGFFASLQSLTNERVSRNLDDLIDNVQKEFDNYDPTTLNREFLTLQGCMIEVMKDGGGNRYKISH 226          
BLAST of mRNA_H-paniculata_contig18404.4514.1 vs. uniprot
Match: UPI0019D68C4E (uncharacterized protein LOC120691778 isoform X1 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D68C4E)

HSP 1 Score: 68.6 bits (166), Expect = 5.580e-12
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    1 VKLVTQPAQSPDLNINDLGFFASLKS----RRYGTVDDLVDGVKSMYDAYDVDTLERVWQSLFKRYNQVLRAMGGNDFEIEH 234
            ++L+ QP  SPDLN+ DLGFFASL+S    R    +DDL+D V+  +D YD  TL R + +L     +V++  GGN ++I H
Sbjct:  170 IRLINQPTNSPDLNVLDLGFFASLQSLTNERVSRNLDDLIDNVQKEFDNYDPTTLNREFLTLQGCMIEVMKDGGGNRYKISH 251          
BLAST of mRNA_H-paniculata_contig18404.4514.1 vs. uniprot
Match: UPI000B797FC7 (uncharacterized protein LOC110699849 n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B797FC7)

HSP 1 Score: 68.6 bits (166), Expect = 8.740e-12
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    1 VKLVTQPAQSPDLNINDLGFFASLKSRRYG----TVDDLVDGVKSMYDAYDVDTLERVWQSLFKRYNQVLRAMGGNDFEIEH 234
            ++ + QPAQSPDLN+ DLG F S++S +Y      +D+LV  VK  YD +D +  + +W +L     ++L+A GGN ++I H
Sbjct:  237 IQFIFQPAQSPDLNVLDLGLFRSIQSLQYQFFPKDLDELVQKVKDSYDTFDPEVNKYIWVTLQNCMIKILKAKGGNKYKIPH 318          
BLAST of mRNA_H-paniculata_contig18404.4514.1 vs. uniprot
Match: UPI0014935307 (uncharacterized protein LOC117833175 n=1 Tax=Setaria viridis TaxID=4556 RepID=UPI0014935307)

HSP 1 Score: 68.2 bits (165), Expect = 1.060e-11
Identity = 34/82 (41.46%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 VKLVTQPAQSPDLNINDLGFFASLKSRRYGTV----DDLVDGVKSMYDAYDVDTLERVWQSLFKRYNQVLRAMGGNDFEIEH 234
            ++L+ QP  SPD+N+ DLGFFASL+S  Y T+    +DL+  VK+ Y+ YD  ++  V+ +L     +V++A GGN ++I H
Sbjct:  220 IRLMNQPPNSPDMNVLDLGFFASLQSLTYTTISNNMNDLIANVKNEYENYDHRSIRNVFLTLQGCMIEVMKASGGNKYKIPH 301          
BLAST of mRNA_H-paniculata_contig18404.4514.1 vs. uniprot
Match: UPI000B77CF5C (uncharacterized protein LOC110698865 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B77CF5C)

HSP 1 Score: 67.4 bits (163), Expect = 2.510e-11
Identity = 33/82 (40.24%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 VKLVTQPAQSPDLNINDLGFFASLKSRRYGT----VDDLVDGVKSMYDAYDVDTLERVWQSLFKRYNQVLRAMGGNDFEIEH 234
            ++ V QPAQSPDLN+ DLG F S++S +Y +    +++LV+ VK  YD ++    + +W +L K   ++L+A GGN ++I H
Sbjct:  373 IQFVFQPAQSPDLNVLDLGLFRSIQSLQYQSFPRDLEELVEKVKQSYDTFNPHVNKYIWVTLQKCMIKILKAEGGNKYKIPH 454          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18404.4514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
J3LC73_ORYBR8.190e-1340.24Uncharacterized protein n=1 Tax=Oryza brachyantha ... [more]
A0A6G0X8U9_9STRA1.510e-1242.68Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6G0XDP2_9STRA1.820e-1242.50Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
UPI00053F72361.870e-1237.80uncharacterized protein LOC104908485 n=1 Tax=Beta ... [more]
A0A7S2FC44_9STRA3.030e-1241.46Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI0019D5EA5F4.410e-1243.90uncharacterized protein LOC120691778 isoform X2 n=... [more]
UPI0019D68C4E5.580e-1243.90uncharacterized protein LOC120691778 isoform X1 n=... [more]
UPI000B797FC78.740e-1240.24uncharacterized protein LOC110699849 n=2 Tax=Cheno... [more]
UPI00149353071.060e-1141.46uncharacterized protein LOC117833175 n=1 Tax=Setar... [more]
UPI000B77CF5C2.510e-1140.24uncharacterized protein LOC110698865 n=1 Tax=Cheno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18404contigH-paniculata_contig18404:214..459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score73.2
Seed ortholog evalue6.2e-11
Seed eggNOG ortholog4533.OB02G22400.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759,37TMG@33090,3GG9M@35493,3IN2T@38820,3M2XW@4447
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons2
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929427.51449-CDS-H-paniculata_contig18404:213..2941622929427.51449-CDS-H-paniculata_contig18404:213..294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18404 214..294 +
1691480856.85358-CDS-H-paniculata_contig18404:213..2941691480856.85358-CDS-H-paniculata_contig18404:213..294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18404 214..294 +
1622929427.5521524-CDS-H-paniculata_contig18404:306..4591622929427.5521524-CDS-H-paniculata_contig18404:306..459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18404 307..459 +
1691480856.8643928-CDS-H-paniculata_contig18404:306..4591691480856.8643928-CDS-H-paniculata_contig18404:306..459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18404 307..459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18404.4514.1prot_H-paniculata_contig18404.4514.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18404 214..459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18404.4514.1

>prot_H-paniculata_contig18404.4514.1 ID=prot_H-paniculata_contig18404.4514.1|Name=mRNA_H-paniculata_contig18404.4514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
VKLVTQPAQSPDLNINDLGFFASLKSRRYGTVDDLVDGVKSMYDAYDVDT
LERVWQSLFKRYNQVLRAMGGNDFEIEH
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mRNA from alignment at H-paniculata_contig18404:214..459+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18404.4514.1 ID=mRNA_H-paniculata_contig18404.4514.1|Name=mRNA_H-paniculata_contig18404.4514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=246bp|location=Sequence derived from alignment at H-paniculata_contig18404:214..459+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAACTCGTAACGCAGCCTGCACAATCGCCGGATCTCAACATCAACGA TTTGGGATTTTTTGCGTCTCTGAAGAGCAGGGTATAGGGAGAGCGCTACG GCACGGTCGACGACCTGGTAGATGGAGTAAAGAGCATGTACGACGCCTAC GATGTAGACACGTTAGAGAGAGTATGGCAAAGTCTGTTCAAAAGGTACAA TCAGGTTTTGCGAGCCATGGGAGGGAACGATTTCGAGATAGAGCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig18404:214..459+

>mRNA_H-paniculata_contig18404.4514.1 ID=mRNA_H-paniculata_contig18404.4514.1|Name=mRNA_H-paniculata_contig18404.4514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig18404:214..459+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAACTCGTAACGCAGCCTGCACAATCGCCGGATCTCAACATCAACGA
TTTGGGATTTTTTGCGTCTCTGAAGAGCAGGGTGAAACTCGTAACGCAGC
CTGCACAATCGCCGGATCTCAACATCAACGATTTGGGATTTTTTGCGTCT
CTGAAGAGCAGGCGCTACGGCACGGTCGACGACCTGGTAGATGGAGTAAA
GAGCATGTACGACGCCTACGATGTAGACACGTTAGAGAGAGTATGGCAAA
GTCTGTTCAAAAGGTACAATCAGGTTTTGCGAGCCATGGGAGGGAACGAT
TTCGAGATAGAGCACCGCTACGGCACGGTCGACGACCTGGTAGATGGAGT
AAAGAGCATGTACGACGCCTACGATGTAGACACGTTAGAGAGAGTATGGC
AAAGTCTGTTCAAAAGGTACAATCAGGTTTTGCGAGCCATGGGAGGGAAC
GATTTCGAGATAGAGCAC
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