mRNA_H-paniculata_contig1840.4510.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Match: A0A6H5JP15_9PHAE (Proteasome subunit alpha type n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP15_9PHAE) HSP 1 Score: 226 bits (576), Expect = 6.630e-68 Identity = 124/245 (50.61%), Postives = 168/245 (68.57%), Query Frame = 3
Query: 306 RGGAVSRDDVPYSFSLTSFSPRGSLTQIEYASNAVLEGALTVAITYEGGVVMASVCKAESPLVVDIARRKIAHVADSTALLYSGLAADSRILARCAQEWCLRYQLKFGSDAVVPLTALVSELALLMQEYTQMAGVRPFGVALLVAGFEPEDNAKSPQDDPSFGTDEDSGRPQSRLYKLEPSGRYSAWKAAAIGKGSAAAENILQREHKRVKDRNGALDFALSVVLRCASSETKRADIELAFVENG 1040
RGGA RDD YSFSLT++SP G L Q+EYA N+ L GAL++A+ Y GG+ MA+V + +SPLV+D+ RKIA ++D A+++SGLAAD+RIL + A+ CL Y+ KFG A++P+ LV+E+A ++QEYTQM GVRPFGVA LVAG + N LY+L+PSG ++WKAAAIGKGSA AE IL E + + DR+ AL+ ALS+ LRC+S T+ D+E A++E G
Sbjct: 43 RGGA--RDDGRYSFSLTTYSPEGRLNQLEYAMNSALGGALSIAVIYAGGIAMATVNQTKSPLVLDLLTRKIARLSDGIAIMHSGLAADARILTKKAEACCLGYKGKFGEQAIIPVGNLVTEVASILQEYTQMGGVRPFGVAFLVAGIGDDGNGL--------------------LYRLDPSGSVTSWKAAAIGKGSAEAEVILHEEFEDLVDRDHALELALSIALRCSSGTTEE-DVETAYIERG 264
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Match: D7FQX5_ECTSI (Proteasome subunit alpha type 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX5_ECTSI) HSP 1 Score: 172 bits (437), Expect = 1.840e-48 Identity = 95/194 (48.97%), Postives = 130/194 (67.01%), Query Frame = 3
Query: 459 MASVCKAESPLVVDIARRKIAHVADSTALLYSGLAADSRILARCAQEWCLRYQLKFGSDAVVPLTALVSELALLMQEYTQMAGVRPFGVALLVAGFEPEDNAKSPQDDPSFGTDEDSGRPQSRLYKLEPSGRYSAWKAAAIGKGSAAAENILQREHKRVKDRNGALDFALSVVLRCASSETKRADIELAFVENG 1040
MA+V + +SPLV+D+ RKIA ++D A+++SGLAAD+RIL + A+ CL Y+ KFG A++P+ LV+E+A ++QEYTQM GVRPFG A LVAG DD G LY+L+PSG ++WKAAAIGKGSA AE IL E + + DR+ AL+ ALS+ LRC+S T+ D+E A++E G
Sbjct: 1 MATVSQTKSPLVLDLLTRKIARLSDGIAIMHSGLAADARILTKKAEACCLGYKSKFGEQAIIPVGNLVTEVASILQEYTQMGGVRPFGAAFLVAGI----------DDDGHGL----------LYRLDPSGSVTSWKAAAIGKGSAEAEVILHDEFEDLVDRDHALELALSIALRCSSGTTEE-DVETAYIERG 173
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Match: A0A7S3D2Y5_9EUKA (Proteasome subunit alpha type n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D2Y5_9EUKA) HSP 1 Score: 144 bits (363), Expect = 6.680e-37 Identity = 92/238 (38.66%), Postives = 132/238 (55.46%), Query Frame = 3
Query: 330 DVPYSFSLTSFSPRGSLTQIEYASNAVLEGALTVAITYEGGVVMASVCKAESPLVVDIARRKIAHVADSTALLYSGLAADSRILARCAQEWCLRYQLKFGSDAVVPLTALVSELALLMQEYTQMAGVRPFGVALLVAGFEPEDNAKSPQDDPSFGTDEDSGRPQSRLYKLEPSGRYSAWKAAAIGKGSAAAENILQREHKRVKDRNGALDFALSVVLRCASSETKRADIELAFVENGR 1043
D YSFSLT+FSP G L QIEYA NAV GA + I GVV+A+ K SPL+ + + +KI V+D+ +Y+GL D+R+LA A++ Y L+ D + P++ LV E A ++Q+YTQ GVRPFGV+LLVAGF+ E LY+L+PSG Y AWKA+AIGK A+ L++ + + A+ A+ + E +IE+A + +
Sbjct: 2 DSAYSFSLTTFSPSGKLVQIEYALNAVAAGATALGIKATNGVVIATEKKIPSPLIEEESVQKIYPVSDNIGFVYAGLGPDARVLAAKARKEAQTY-LRLYQDTL-PVSQLVRETARVVQDYTQRGGVRPFGVSLLVAGFDEEGP---------------------HLYQLDPSGSYWAWKASAIGKNMINAKTFLEKRYSEEVELEDAIHTAILTLKEGFDGEVTEKNIEIAIATSDK 216
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Match: A0A0D2WKY9_CAPO3 (Proteasome subunit alpha type n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WKY9_CAPO3) HSP 1 Score: 144 bits (362), Expect = 9.590e-37 Identity = 87/242 (35.95%), Postives = 132/242 (54.55%), Query Frame = 3
Query: 339 YSFSLTSFSPRGSLTQIEYASNAVLEGALTVAITYEGGVVMASVCKAESPLVVDIARRKIAHVADSTALLYSGLAADSRILARCAQEWCLRYQLKFGSDAVVPLTALVSELALLMQEYTQMAGVRPFGVALLVAGFEPEDNAKSPQDDPSFGTDEDSGRPQSRLYKLEPSGRYSAWKAAAIGKGSAAAENILQREHKRVKDRNGALDFALSVVLRCASSETKRADIELAFVENGRIQIVDMS 1064
Y FSLT+FSP G L QIEYA NAV G +V I GVV+A+ K + L+ + + +K++ + D +YSG+ DSR+L R A++ +Y +G +P + LV E+A +MQEYTQ GVRPFGV+LLVAG+ D+ K P LY+++PSG Y AWKA+AIGK A L++ + + A+ A+ + + +IE+ + +++ M+
Sbjct: 5 YGFSLTTFSPSGKLVQIEYALNAVQGGTTSVGIKAVNGVVIATEKKLPTALIDESSLQKVSSINDKVGFVYSGMGPDSRVLLRKARKIAQQYYTTYGES--MPTSQLVREVASVMQEYTQSGGVRPFGVSLLVAGY---DSVKGPS-----------------LYQVDPSGSYWAWKASAIGKNMLNARTFLEKRYTETIELEDAIHTAILTLKEGFEGQMTEHNIEIGIADQKGYRVLSMA 224
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Match: A0A7S2F165_9CHLO (Proteasome subunit alpha type n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2F165_9CHLO) HSP 1 Score: 143 bits (360), Expect = 1.980e-36 Identity = 93/240 (38.75%), Postives = 137/240 (57.08%), Query Frame = 3
Query: 339 YSFSLTSFSPRGSLTQIEYASNAVLEGALTVAITYEGGVVMASVCKAESPLVVDIARRKIAHVADSTALLYSGLAADSRILARCAQEWCLRYQLKFGSDAVVPLTALVSELALLMQEYTQMAGVRPFGVALLVAGFEPEDNAKSPQDDPSFGTDEDSGRPQSRLYKLEPSGRYSAWKAAAIGKGSAAAENILQREHKRVKDRNGALDFALSVVLRCASSETKRADIELAFV-ENGRIQIV 1055
YSFSLT+FSP G L QIEYA NAV +GA ++ I + GVV+A+ K SPLV + +KI ++ D+ +YSG+ D R+L R A+ Y + +P++ LV E+A +MQE+TQ GVRPFGV+LLVAG D G PQ LY+++PSG Y AWKA+AIGK A+ L++ + + + A+ AL + E + +E+A V ++G+ ++
Sbjct: 6 YSFSLTTFSPSGKLVQIEYALNAVSQGATSLGIKAKNGVVLATEKKTPSPLVDESTVQKIVNITDNIGFVYSGMGGDYRVLVRRARRTAQAYYDVYKE--AIPVSQLVREVAAVMQEFTQSGGVRPFGVSLLVAG----------NDGLGHG-------PQ--LYQVDPSGTYFAWKASAIGKNMVNAKAFLEKRYDASVELDDAVHTALLTLKEGFDGELTKEKVEVAVVGDDGQFTVL 224
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Match: A0A4P9YXN7_9FUNG (Proteasome subunit alpha type n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YXN7_9FUNG) HSP 1 Score: 142 bits (359), Expect = 3.420e-36 Identity = 87/238 (36.55%), Postives = 132/238 (55.46%), Query Frame = 3
Query: 339 YSFSLTSFSPRGSLTQIEYASNAVLEGALTVAITYEGGVVMASVCKAESPLVVDIARRKIAHVADSTALLYSGLAADSRILARCAQEWCLRYQLKFGSDAVVPLTALVSELALLMQEYTQMAGVRPFGVALLVAGFEPEDNAKSPQDDPSFGTDEDSGRPQSRLYKLEPSGRYSAWKAAAIGKGSAAAENILQREHKRVKDRNGALDFALSVVLRCASSETKRADIELAFVENGRIQI 1052
Y+FSLT+FSP G L QIE+A AV +G +V I GVV+A+ K+ +PL+ D K++ + D+ L+YSG+ D+R+L A++ +Y+ +G + P LV E+A +MQEYTQ GVRPFGV+LLVAGF+ + PS LY+++PSG Y AWKA+AIGK A+ L++ + A+ A+ + E +IE+ + G + +
Sbjct: 5 YNFSLTTFSPAGKLGQIEHALQAVSQGVTSVGIRANNGVVIATEKKSATPLIDDTTIEKVSLICDNVGLVYSGMGPDARVLVNKARKEAQKYKRVYGENP--PAMVLVREIANIMQEYTQSGGVRPFGVSLLVAGFD--------ERGPS-------------LYQVDPSGTYFAWKASAIGKNMINAKTFLEKRFNDELELEDAVHTAILTLKEGFEGEMTENNIEIGVIGGGDVAV 219
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Match: A0A7S1T6A5_9RHOD (Proteasome subunit alpha type n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T6A5_9RHOD) HSP 1 Score: 142 bits (357), Expect = 5.090e-36 Identity = 86/241 (35.68%), Postives = 135/241 (56.02%), Query Frame = 3
Query: 330 DVPYSFSLTSFSPRGSLTQIEYASNAVLEGALTVAITYEGGVVMASVCKAESPLVVDIARRKIAHVADSTALLYSGLAADSRILARCAQEWCLRYQLKFGSDAVVPLTALVSELALLMQEYTQMAGVRPFGVALLVAGFEPEDNAKSPQDDPSFGTDEDSGRPQSRLYKLEPSGRYSAWKAAAIGKGSAAAENILQREHKRVKDRNGALDFALSVVLRCASSETKRADIELAFV-ENGRIQ 1049
+ YSFSLT+FSP G L QIEYA NAV GA ++ I GVV+A+ + SPL+ + + K++ + ++Y+G+ DSR+L R A++ +Y + +P++ LV E+A +MQEYTQ GVRPFGV+LLVAGF+ E LY+++PSG Y AWKA+AIGK A+ L++ + + + A+ A+ + ++IE+ + E+G+ +
Sbjct: 3 EADYSFSLTTFSPSGKLVQIEYALNAVATGATSLGIKARNGVVIATEKRMTSPLMDETSLLKVSLITGHVGMVYAGMGPDSRVLLRNARKSAQKYYQIYKEP--IPVSQLVREIASIMQEYTQSGGVRPFGVSLLVAGFDDEGP---------------------HLYQVDPSGSYFAWKASAIGKNMVNAKTFLEKRYSDDIELDDAIHTAILTLKEGFEGHVTESNIEIGVISEDGKFR 220
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Match: A0A388K5M7_CHABU (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K5M7_CHABU) HSP 1 Score: 140 bits (354), Expect = 1.380e-35 Identity = 89/234 (38.03%), Postives = 135/234 (57.69%), Query Frame = 3
Query: 330 DVPYSFSLTSFSPRGSLTQIEYASNAVLEGALTVAITYEGGVVMASVCKAESPLVVDIARRKIAHVADSTALLYSGLAADSRILARCAQEWCLRYQLKFGSDAVVPLTALVSELALLMQEYTQMAGVRPFGVALLVAGFEPEDNAKSPQDDPSFGTDEDSGRPQSRLYKLEPSGRYSAWKAAAIGKGSAAAENILQREHKRVKDRNGALDFALSVVLRCASSETKRADIELAFV 1031
D YSFSLT+FSP G L QIE+A NAV GA ++ I GVV+A+ K S LV + + RKI+ ++ + ++YSG+ DSR+L +++ +Y + + +P+ LV E+A +MQE+TQ GVRPFGV+LLVAG+ DS PQ LY+++PSG Y AWKA+AIGK +A A+ L++ + + A+ A+ + + ++IE+ V
Sbjct: 3 DSQYSFSLTTFSPSGQLVQIEHALNAVAAGATSLGIKASNGVVIATEKKLPSILVDEQSVRKISVLSKNIGVVYSGMGPDSRVLVSKSRKQAQQYFRLY--EEPIPIAQLVREIAAVMQEFTQSGGVRPFGVSLLVAGY-------------------DSSGPQ--LYQVDPSGSYFAWKASAIGKNTANAKTFLEKRYTEDMELEDAVHTAILTLKEGFEGQISGSNIEIGIV 213
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Match: A0A1Y1XYS2_9FUNG (Proteasome subunit alpha type n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XYS2_9FUNG) HSP 1 Score: 140 bits (353), Expect = 2.150e-35 Identity = 86/234 (36.75%), Postives = 126/234 (53.85%), Query Frame = 3
Query: 339 YSFSLTSFSPRGSLTQIEYASNAVLEGALTVAITYEGGVVMASVCKAESPLVVDIARRKIAHVADSTALLYSGLAADSRILARCAQEWCLRYQLKFGSDAVVPLTALVSELALLMQEYTQMAGVRPFGVALLVAGFEPEDNAKSPQDDPSFGTDEDSGRPQSRLYKLEPSGRYSAWKAAAIGKGSAAAENILQREHKRVKDRNGALDFALSVVLRCASSETKRADIELAFVENG 1040
YSFSLT+FSP G L QIEYA NAV +G ++ I G+V+A+ K SPL+ KI+ + + L+YSG+ D+R+L A++ Y+ + D P T LV ++A +MQE+TQ GVRPFGV+LLVAG++ K P LY+++PSG Y AWKA AIGK A+ L++ + + + A+ A+ + E IE+ + G
Sbjct: 5 YSFSLTTFSPSGKLVQIEYALNAVAQGVTSIGIKAANGIVIATEKKTASPLIDSTTVEKISTICPNVGLVYSGMGPDARVLVNKARKSAQVYRRVYQEDP--PNTMLVKDVAGVMQEFTQRGGVRPFGVSLLVAGYD----EKGPS-----------------LYQVDPSGSYWAWKATAIGKNMVNAKTFLEKRYNEEMELDDAIHTAILTLKEGYEGEMTEHSIEIGVIGGG 215
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Match: A0A812QIG7_9DINO (PAB1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812QIG7_9DINO) HSP 1 Score: 140 bits (352), Expect = 2.700e-35 Identity = 91/239 (38.08%), Postives = 138/239 (57.74%), Query Frame = 3
Query: 330 DVPYSFSLTSFSPRGSLTQIEYASNAVLEGALTVAITYEGGVVMASVCKAESPLVVDIARRKIAHVADSTALLYSGLAADSRILARCAQEWCLRYQLKFGSDAVVPLTALVSELALLMQEYTQMAGVRPFGVALLVAGFEPEDNAKSPQDDPSFGTDEDSGRPQSRLYKLEPSGRYSAWKAAAIGKGSAAAENILQREHKRVKDRNGALDFALSVVLRCASSETKRAD-IELAFVENGR 1043
D YSFSLT+F+P G L QIEYA N V EG + I + GVV+A+ K SPLV + K+ +++DS ++Y+G+ AD R+L R ++ +Y + ++P++ +V E A +MQE+TQ GVRPFGV+L++AGF+ DSG PQ L++++PSG Y WKA+AIGK A++ L++ + + A+ A+ + L+ E AD IE+ V N R
Sbjct: 3 DSEYSFSLTTFAPSGKLLQIEYALNRVAEGRPALGIKAKNGVVLATEKKVTSPLVDEKTLAKVENLSDSVGMVYAGMPADYRVLLRRGRKVAQQYYTMYRE--LIPVSQIVREEAAIMQEFTQSGGVRPFGVSLMIAGFD------------------DSG-PQ--LFQVDPSGTYFGWKASAIGKNHVNAKSFLEKRYSEDIELEDAIHTAI-LTLKEGFEEAITADNIEIGIVGNDR 217 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1840.4510.1 >prot_H-paniculata_contig1840.4510.1 ID=prot_H-paniculata_contig1840.4510.1|Name=mRNA_H-paniculata_contig1840.4510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=302bp MSSKCWPTRQMLAQWMLLFTATATLPLTIASSSTSQRWLSGKGAALATRGback to top mRNA from alignment at H-paniculata_contig1840:9446..12006+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1840.4510.1 ID=mRNA_H-paniculata_contig1840.4510.1|Name=mRNA_H-paniculata_contig1840.4510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2561bp|location=Sequence derived from alignment at H-paniculata_contig1840:9446..12006+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1840:9446..12006+ >mRNA_H-paniculata_contig1840.4510.1 ID=mRNA_H-paniculata_contig1840.4510.1|Name=mRNA_H-paniculata_contig1840.4510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1812bp|location=Sequence derived from alignment at H-paniculata_contig1840:9446..12006+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |