mRNA_H-paniculata_contig1840.4510.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1840.4510.1
Unique NamemRNA_H-paniculata_contig1840.4510.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Match: A0A6H5JP15_9PHAE (Proteasome subunit alpha type n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP15_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 6.630e-68
Identity = 124/245 (50.61%), Postives = 168/245 (68.57%), Query Frame = 3
Query:  306 RGGAVSRDDVPYSFSLTSFSPRGSLTQIEYASNAVLEGALTVAITYEGGVVMASVCKAESPLVVDIARRKIAHVADSTALLYSGLAADSRILARCAQEWCLRYQLKFGSDAVVPLTALVSELALLMQEYTQMAGVRPFGVALLVAGFEPEDNAKSPQDDPSFGTDEDSGRPQSRLYKLEPSGRYSAWKAAAIGKGSAAAENILQREHKRVKDRNGALDFALSVVLRCASSETKRADIELAFVENG 1040
            RGGA  RDD  YSFSLT++SP G L Q+EYA N+ L GAL++A+ Y GG+ MA+V + +SPLV+D+  RKIA ++D  A+++SGLAAD+RIL + A+  CL Y+ KFG  A++P+  LV+E+A ++QEYTQM GVRPFGVA LVAG   + N                      LY+L+PSG  ++WKAAAIGKGSA AE IL  E + + DR+ AL+ ALS+ LRC+S  T+  D+E A++E G
Sbjct:   43 RGGA--RDDGRYSFSLTTYSPEGRLNQLEYAMNSALGGALSIAVIYAGGIAMATVNQTKSPLVLDLLTRKIARLSDGIAIMHSGLAADARILTKKAEACCLGYKGKFGEQAIIPVGNLVTEVASILQEYTQMGGVRPFGVAFLVAGIGDDGNGL--------------------LYRLDPSGSVTSWKAAAIGKGSAEAEVILHEEFEDLVDRDHALELALSIALRCSSGTTEE-DVETAYIERG 264          
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Match: D7FQX5_ECTSI (Proteasome subunit alpha type 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX5_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 1.840e-48
Identity = 95/194 (48.97%), Postives = 130/194 (67.01%), Query Frame = 3
Query:  459 MASVCKAESPLVVDIARRKIAHVADSTALLYSGLAADSRILARCAQEWCLRYQLKFGSDAVVPLTALVSELALLMQEYTQMAGVRPFGVALLVAGFEPEDNAKSPQDDPSFGTDEDSGRPQSRLYKLEPSGRYSAWKAAAIGKGSAAAENILQREHKRVKDRNGALDFALSVVLRCASSETKRADIELAFVENG 1040
            MA+V + +SPLV+D+  RKIA ++D  A+++SGLAAD+RIL + A+  CL Y+ KFG  A++P+  LV+E+A ++QEYTQM GVRPFG A LVAG           DD   G           LY+L+PSG  ++WKAAAIGKGSA AE IL  E + + DR+ AL+ ALS+ LRC+S  T+  D+E A++E G
Sbjct:    1 MATVSQTKSPLVLDLLTRKIARLSDGIAIMHSGLAADARILTKKAEACCLGYKSKFGEQAIIPVGNLVTEVASILQEYTQMGGVRPFGAAFLVAGI----------DDDGHGL----------LYRLDPSGSVTSWKAAAIGKGSAEAEVILHDEFEDLVDRDHALELALSIALRCSSGTTEE-DVETAYIERG 173          
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Match: A0A7S3D2Y5_9EUKA (Proteasome subunit alpha type n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D2Y5_9EUKA)

HSP 1 Score: 144 bits (363), Expect = 6.680e-37
Identity = 92/238 (38.66%), Postives = 132/238 (55.46%), Query Frame = 3
Query:  330 DVPYSFSLTSFSPRGSLTQIEYASNAVLEGALTVAITYEGGVVMASVCKAESPLVVDIARRKIAHVADSTALLYSGLAADSRILARCAQEWCLRYQLKFGSDAVVPLTALVSELALLMQEYTQMAGVRPFGVALLVAGFEPEDNAKSPQDDPSFGTDEDSGRPQSRLYKLEPSGRYSAWKAAAIGKGSAAAENILQREHKRVKDRNGALDFALSVVLRCASSETKRADIELAFVENGR 1043
            D  YSFSLT+FSP G L QIEYA NAV  GA  + I    GVV+A+  K  SPL+ + + +KI  V+D+   +Y+GL  D+R+LA  A++    Y L+   D + P++ LV E A ++Q+YTQ  GVRPFGV+LLVAGF+ E                        LY+L+PSG Y AWKA+AIGK    A+  L++ +    +   A+  A+  +      E    +IE+A   + +
Sbjct:    2 DSAYSFSLTTFSPSGKLVQIEYALNAVAAGATALGIKATNGVVIATEKKIPSPLIEEESVQKIYPVSDNIGFVYAGLGPDARVLAAKARKEAQTY-LRLYQDTL-PVSQLVRETARVVQDYTQRGGVRPFGVSLLVAGFDEEGP---------------------HLYQLDPSGSYWAWKASAIGKNMINAKTFLEKRYSEEVELEDAIHTAILTLKEGFDGEVTEKNIEIAIATSDK 216          
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Match: A0A0D2WKY9_CAPO3 (Proteasome subunit alpha type n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WKY9_CAPO3)

HSP 1 Score: 144 bits (362), Expect = 9.590e-37
Identity = 87/242 (35.95%), Postives = 132/242 (54.55%), Query Frame = 3
Query:  339 YSFSLTSFSPRGSLTQIEYASNAVLEGALTVAITYEGGVVMASVCKAESPLVVDIARRKIAHVADSTALLYSGLAADSRILARCAQEWCLRYQLKFGSDAVVPLTALVSELALLMQEYTQMAGVRPFGVALLVAGFEPEDNAKSPQDDPSFGTDEDSGRPQSRLYKLEPSGRYSAWKAAAIGKGSAAAENILQREHKRVKDRNGALDFALSVVLRCASSETKRADIELAFVENGRIQIVDMS 1064
            Y FSLT+FSP G L QIEYA NAV  G  +V I    GVV+A+  K  + L+ + + +K++ + D    +YSG+  DSR+L R A++   +Y   +G    +P + LV E+A +MQEYTQ  GVRPFGV+LLVAG+   D+ K P                  LY+++PSG Y AWKA+AIGK    A   L++ +    +   A+  A+  +      +    +IE+   +    +++ M+
Sbjct:    5 YGFSLTTFSPSGKLVQIEYALNAVQGGTTSVGIKAVNGVVIATEKKLPTALIDESSLQKVSSINDKVGFVYSGMGPDSRVLLRKARKIAQQYYTTYGES--MPTSQLVREVASVMQEYTQSGGVRPFGVSLLVAGY---DSVKGPS-----------------LYQVDPSGSYWAWKASAIGKNMLNARTFLEKRYTETIELEDAIHTAILTLKEGFEGQMTEHNIEIGIADQKGYRVLSMA 224          
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Match: A0A7S2F165_9CHLO (Proteasome subunit alpha type n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2F165_9CHLO)

HSP 1 Score: 143 bits (360), Expect = 1.980e-36
Identity = 93/240 (38.75%), Postives = 137/240 (57.08%), Query Frame = 3
Query:  339 YSFSLTSFSPRGSLTQIEYASNAVLEGALTVAITYEGGVVMASVCKAESPLVVDIARRKIAHVADSTALLYSGLAADSRILARCAQEWCLRYQLKFGSDAVVPLTALVSELALLMQEYTQMAGVRPFGVALLVAGFEPEDNAKSPQDDPSFGTDEDSGRPQSRLYKLEPSGRYSAWKAAAIGKGSAAAENILQREHKRVKDRNGALDFALSVVLRCASSETKRADIELAFV-ENGRIQIV 1055
            YSFSLT+FSP G L QIEYA NAV +GA ++ I  + GVV+A+  K  SPLV +   +KI ++ D+   +YSG+  D R+L R A+     Y   +     +P++ LV E+A +MQE+TQ  GVRPFGV+LLVAG           D    G       PQ  LY+++PSG Y AWKA+AIGK    A+  L++ +    + + A+  AL  +      E  +  +E+A V ++G+  ++
Sbjct:    6 YSFSLTTFSPSGKLVQIEYALNAVSQGATSLGIKAKNGVVLATEKKTPSPLVDESTVQKIVNITDNIGFVYSGMGGDYRVLVRRARRTAQAYYDVYKE--AIPVSQLVREVAAVMQEFTQSGGVRPFGVSLLVAG----------NDGLGHG-------PQ--LYQVDPSGTYFAWKASAIGKNMVNAKAFLEKRYDASVELDDAVHTALLTLKEGFDGELTKEKVEVAVVGDDGQFTVL 224          
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Match: A0A4P9YXN7_9FUNG (Proteasome subunit alpha type n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YXN7_9FUNG)

HSP 1 Score: 142 bits (359), Expect = 3.420e-36
Identity = 87/238 (36.55%), Postives = 132/238 (55.46%), Query Frame = 3
Query:  339 YSFSLTSFSPRGSLTQIEYASNAVLEGALTVAITYEGGVVMASVCKAESPLVVDIARRKIAHVADSTALLYSGLAADSRILARCAQEWCLRYQLKFGSDAVVPLTALVSELALLMQEYTQMAGVRPFGVALLVAGFEPEDNAKSPQDDPSFGTDEDSGRPQSRLYKLEPSGRYSAWKAAAIGKGSAAAENILQREHKRVKDRNGALDFALSVVLRCASSETKRADIELAFVENGRIQI 1052
            Y+FSLT+FSP G L QIE+A  AV +G  +V I    GVV+A+  K+ +PL+ D    K++ + D+  L+YSG+  D+R+L   A++   +Y+  +G +   P   LV E+A +MQEYTQ  GVRPFGV+LLVAGF+        +  PS             LY+++PSG Y AWKA+AIGK    A+  L++      +   A+  A+  +      E    +IE+  +  G + +
Sbjct:    5 YNFSLTTFSPAGKLGQIEHALQAVSQGVTSVGIRANNGVVIATEKKSATPLIDDTTIEKVSLICDNVGLVYSGMGPDARVLVNKARKEAQKYKRVYGENP--PAMVLVREIANIMQEYTQSGGVRPFGVSLLVAGFD--------ERGPS-------------LYQVDPSGTYFAWKASAIGKNMINAKTFLEKRFNDELELEDAVHTAILTLKEGFEGEMTENNIEIGVIGGGDVAV 219          
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Match: A0A7S1T6A5_9RHOD (Proteasome subunit alpha type n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T6A5_9RHOD)

HSP 1 Score: 142 bits (357), Expect = 5.090e-36
Identity = 86/241 (35.68%), Postives = 135/241 (56.02%), Query Frame = 3
Query:  330 DVPYSFSLTSFSPRGSLTQIEYASNAVLEGALTVAITYEGGVVMASVCKAESPLVVDIARRKIAHVADSTALLYSGLAADSRILARCAQEWCLRYQLKFGSDAVVPLTALVSELALLMQEYTQMAGVRPFGVALLVAGFEPEDNAKSPQDDPSFGTDEDSGRPQSRLYKLEPSGRYSAWKAAAIGKGSAAAENILQREHKRVKDRNGALDFALSVVLRCASSETKRADIELAFV-ENGRIQ 1049
            +  YSFSLT+FSP G L QIEYA NAV  GA ++ I    GVV+A+  +  SPL+ + +  K++ +     ++Y+G+  DSR+L R A++   +Y   +     +P++ LV E+A +MQEYTQ  GVRPFGV+LLVAGF+ E                        LY+++PSG Y AWKA+AIGK    A+  L++ +    + + A+  A+  +          ++IE+  + E+G+ +
Sbjct:    3 EADYSFSLTTFSPSGKLVQIEYALNAVATGATSLGIKARNGVVIATEKRMTSPLMDETSLLKVSLITGHVGMVYAGMGPDSRVLLRNARKSAQKYYQIYKEP--IPVSQLVREIASIMQEYTQSGGVRPFGVSLLVAGFDDEGP---------------------HLYQVDPSGSYFAWKASAIGKNMVNAKTFLEKRYSDDIELDDAIHTAILTLKEGFEGHVTESNIEIGVISEDGKFR 220          
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Match: A0A388K5M7_CHABU (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K5M7_CHABU)

HSP 1 Score: 140 bits (354), Expect = 1.380e-35
Identity = 89/234 (38.03%), Postives = 135/234 (57.69%), Query Frame = 3
Query:  330 DVPYSFSLTSFSPRGSLTQIEYASNAVLEGALTVAITYEGGVVMASVCKAESPLVVDIARRKIAHVADSTALLYSGLAADSRILARCAQEWCLRYQLKFGSDAVVPLTALVSELALLMQEYTQMAGVRPFGVALLVAGFEPEDNAKSPQDDPSFGTDEDSGRPQSRLYKLEPSGRYSAWKAAAIGKGSAAAENILQREHKRVKDRNGALDFALSVVLRCASSETKRADIELAFV 1031
            D  YSFSLT+FSP G L QIE+A NAV  GA ++ I    GVV+A+  K  S LV + + RKI+ ++ +  ++YSG+  DSR+L   +++   +Y   +  +  +P+  LV E+A +MQE+TQ  GVRPFGV+LLVAG+                   DS  PQ  LY+++PSG Y AWKA+AIGK +A A+  L++ +    +   A+  A+  +      +   ++IE+  V
Sbjct:    3 DSQYSFSLTTFSPSGQLVQIEHALNAVAAGATSLGIKASNGVVIATEKKLPSILVDEQSVRKISVLSKNIGVVYSGMGPDSRVLVSKSRKQAQQYFRLY--EEPIPIAQLVREIAAVMQEFTQSGGVRPFGVSLLVAGY-------------------DSSGPQ--LYQVDPSGSYFAWKASAIGKNTANAKTFLEKRYTEDMELEDAVHTAILTLKEGFEGQISGSNIEIGIV 213          
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Match: A0A1Y1XYS2_9FUNG (Proteasome subunit alpha type n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XYS2_9FUNG)

HSP 1 Score: 140 bits (353), Expect = 2.150e-35
Identity = 86/234 (36.75%), Postives = 126/234 (53.85%), Query Frame = 3
Query:  339 YSFSLTSFSPRGSLTQIEYASNAVLEGALTVAITYEGGVVMASVCKAESPLVVDIARRKIAHVADSTALLYSGLAADSRILARCAQEWCLRYQLKFGSDAVVPLTALVSELALLMQEYTQMAGVRPFGVALLVAGFEPEDNAKSPQDDPSFGTDEDSGRPQSRLYKLEPSGRYSAWKAAAIGKGSAAAENILQREHKRVKDRNGALDFALSVVLRCASSETKRADIELAFVENG 1040
            YSFSLT+FSP G L QIEYA NAV +G  ++ I    G+V+A+  K  SPL+      KI+ +  +  L+YSG+  D+R+L   A++    Y+  +  D   P T LV ++A +MQE+TQ  GVRPFGV+LLVAG++     K P                  LY+++PSG Y AWKA AIGK    A+  L++ +    + + A+  A+  +      E     IE+  +  G
Sbjct:    5 YSFSLTTFSPSGKLVQIEYALNAVAQGVTSIGIKAANGIVIATEKKTASPLIDSTTVEKISTICPNVGLVYSGMGPDARVLVNKARKSAQVYRRVYQEDP--PNTMLVKDVAGVMQEFTQRGGVRPFGVSLLVAGYD----EKGPS-----------------LYQVDPSGSYWAWKATAIGKNMVNAKTFLEKRYNEEMELDDAIHTAILTLKEGYEGEMTEHSIEIGVIGGG 215          
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Match: A0A812QIG7_9DINO (PAB1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812QIG7_9DINO)

HSP 1 Score: 140 bits (352), Expect = 2.700e-35
Identity = 91/239 (38.08%), Postives = 138/239 (57.74%), Query Frame = 3
Query:  330 DVPYSFSLTSFSPRGSLTQIEYASNAVLEGALTVAITYEGGVVMASVCKAESPLVVDIARRKIAHVADSTALLYSGLAADSRILARCAQEWCLRYQLKFGSDAVVPLTALVSELALLMQEYTQMAGVRPFGVALLVAGFEPEDNAKSPQDDPSFGTDEDSGRPQSRLYKLEPSGRYSAWKAAAIGKGSAAAENILQREHKRVKDRNGALDFALSVVLRCASSETKRAD-IELAFVENGR 1043
            D  YSFSLT+F+P G L QIEYA N V EG   + I  + GVV+A+  K  SPLV +    K+ +++DS  ++Y+G+ AD R+L R  ++   +Y   +    ++P++ +V E A +MQE+TQ  GVRPFGV+L++AGF+                  DSG PQ  L++++PSG Y  WKA+AIGK    A++ L++ +    +   A+  A+ + L+    E   AD IE+  V N R
Sbjct:    3 DSEYSFSLTTFAPSGKLLQIEYALNRVAEGRPALGIKAKNGVVLATEKKVTSPLVDEKTLAKVENLSDSVGMVYAGMPADYRVLLRRGRKVAQQYYTMYRE--LIPVSQIVREEAAIMQEFTQSGGVRPFGVSLMIAGFD------------------DSG-PQ--LFQVDPSGTYFGWKASAIGKNHVNAKSFLEKRYSEDIELEDAIHTAI-LTLKEGFEEAITADNIEIGIVGNDR 217          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1840.4510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JP15_9PHAE6.630e-6850.61Proteasome subunit alpha type n=1 Tax=Ectocarpus s... [more]
D7FQX5_ECTSI1.840e-4848.97Proteasome subunit alpha type 2 n=1 Tax=Ectocarpus... [more]
A0A7S3D2Y5_9EUKA6.680e-3738.66Proteasome subunit alpha type n=2 Tax=Palpitomonas... [more]
A0A0D2WKY9_CAPO39.590e-3735.95Proteasome subunit alpha type n=1 Tax=Capsaspora o... [more]
A0A7S2F165_9CHLO1.980e-3638.75Proteasome subunit alpha type n=2 Tax=Pycnococcus ... [more]
A0A4P9YXN7_9FUNG3.420e-3636.55Proteasome subunit alpha type n=1 Tax=Syncephalis ... [more]
A0A7S1T6A5_9RHOD5.090e-3635.68Proteasome subunit alpha type n=1 Tax=Compsopogon ... [more]
A0A388K5M7_CHABU1.380e-3538.03PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
A0A1Y1XYS2_9FUNG2.150e-3536.75Proteasome subunit alpha type n=2 Tax=Basidiobolus... [more]
A0A812QIG7_9DINO2.700e-3538.08PAB1 protein n=1 Tax=Symbiodinium natans TaxID=878... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1840contigH-paniculata_contig1840:9446..12006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.2
Seed ortholog evalue3.8e-40
Seed eggNOG ortholog2880.D7FQX5
KEGG koko:K02726
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsKOG0181@1,KOG0181@2759
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Exons3
Model size1311
Cds size906
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1840.4510.1prot_H-paniculata_contig1840.4510.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1840 9607..11762 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929427.071032-UTR-H-paniculata_contig1840:9445..96061622929427.071032-UTR-H-paniculata_contig1840:9445..9606Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1840 9446..9606 +
1691480856.698131-UTR-H-paniculata_contig1840:9445..96061691480856.698131-UTR-H-paniculata_contig1840:9445..9606Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1840 9446..9606 +
1622929427.1333504-UTR-H-paniculata_contig1840:11762..120061622929427.1333504-UTR-H-paniculata_contig1840:11762..12006Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1840 11763..12006 +
1691480856.738061-UTR-H-paniculata_contig1840:11762..120061691480856.738061-UTR-H-paniculata_contig1840:11762..12006Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1840 11763..12006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929427.0879238-CDS-H-paniculata_contig1840:9606..98581622929427.0879238-CDS-H-paniculata_contig1840:9606..9858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1840 9607..9858 +
1691480856.7109141-CDS-H-paniculata_contig1840:9606..98581691480856.7109141-CDS-H-paniculata_contig1840:9606..9858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1840 9607..9858 +
1622929427.101401-CDS-H-paniculata_contig1840:10344..105051622929427.101401-CDS-H-paniculata_contig1840:10344..10505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1840 10345..10505 +
1691480856.72132-CDS-H-paniculata_contig1840:10344..105051691480856.72132-CDS-H-paniculata_contig1840:10344..10505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1840 10345..10505 +
1622929427.1167936-CDS-H-paniculata_contig1840:11269..117621622929427.1167936-CDS-H-paniculata_contig1840:11269..11762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1840 11270..11762 +
1691480856.7299337-CDS-H-paniculata_contig1840:11269..117621691480856.7299337-CDS-H-paniculata_contig1840:11269..11762Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1840 11270..11762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1840.4510.1

>prot_H-paniculata_contig1840.4510.1 ID=prot_H-paniculata_contig1840.4510.1|Name=mRNA_H-paniculata_contig1840.4510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=302bp
MSSKCWPTRQMLAQWMLLFTATATLPLTIASSSTSQRWLSGKGAALATRG
GAVSRDDVPYSFSLTSFSPRGSLTQIEYASNAVLEGALTVAITYEGGVVM
ASVCKAESPLVVDIARRKIAHVADSTALLYSGLAADSRILARCAQEWCLR
YQLKFGSDAVVPLTALVSELALLMQEYTQMAGVRPFGVALLVAGFEPEDN
AKSPQDDPSFGTDEDSGRPQSRLYKLEPSGRYSAWKAAAIGKGSAAAENI
LQREHKRVKDRNGALDFALSVVLRCASSETKRADIELAFVENGRIQIVDM
S*
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mRNA from alignment at H-paniculata_contig1840:9446..12006+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1840.4510.1 ID=mRNA_H-paniculata_contig1840.4510.1|Name=mRNA_H-paniculata_contig1840.4510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2561bp|location=Sequence derived from alignment at H-paniculata_contig1840:9446..12006+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGGTTATGAATACCTGTAAAATGATACACAATGGAGTGTTCAAACCGG CGTAAGTAGTTATGCTCGCGGGCTGGGTGAAACCTCGGAAGCAACACGGA TCCGAAACGCTGAGTGGTCGGTGACTTGAGCTTCCTCTGGGCACATAGTG AGCAAAGACCGATGTCTAGTAAATGTTGGCCTACGAGACAAATGTTGGCA CAGTGGATGCTGCTGTTTACTGCAACAGCTACGCTGCCCCTCACAATAGC CTCGAGCTCCACTTCCCAGCGATGGTTATCTGGAAAGGGTGCTGCATTGG CAACTCGAGGCGGAGCTGTTAGCAGGGATGACGTGCCTTATTCTTTTTCG CTGACCAGCTTCAGTCCTCGTGGGAGCTTGACGCAGATTGAATATGCTTC GAACGCAGTGTTGGTAAGACTTGAGTTGGTGAACGTACTAAATGCTGTTG TAATTTGTAGTGTACAGTGTTTCTTGACACTGTGGTCAAAATATTATTAA GATGACCGCGAGTTTGGTTTATCACAACCCCAGGTTTGCTGGACGGAACG GAGACCTGTGTCCATTGTGCACATGCCGCAGAAAAAAGGTAGTGAACATA ATCTAGCAACTGTACCGATAGCCCGACAAAAATTGTGAGTTGGTCTTCTG GTATAGTCATGGCTCCTGTTTTATGACGAAGAGAATGAAAATAACGGCGT CGAGGGTGTTTTTTCTAGTTACGATAGATATCACCCCCCCCCCCCCGTCC CCTAAAGATCACATCGGTTTAACAGGGGGAGTGTTATTTTGTGTAACCTA CTATACTTCCCTGTAGGTGTCGTTTCCTGATGCATTTACTACTGCCTTCA CCCTACAGTAGCTTGAAACATCATAACTCTCAAAACCGGCTATTCGCAGG AAGGTGCACTTACGGTGGCAATTACGTACGAGGGTGGCGTAGTGATGGCG TCCGTTTGCAAGGCAGAATCTCCGCTGGTGGTGGACATCGCGAGAAGAAA AATCGCGCATGTAGCGGACAGCACTGCCCTCCTCTACTCGGGTCTGGCAG CAGATTCAAGGTGAAGTCCTCTTGAGCGTTGTTTCCGTTCAACCGCCATG CTCTTATCAGTTGCTGTCATGTACAAAAGAGGAAACCATAGGCATACTTT CGAGCGCGTCCACTCCTACCCCCAAAACACACAGCACGCATGTTCATCGT AGCGACCGGTAAGTTCGTGGCGTGAGGCACCTCGATGCATGTCCTTGTAG CCTTGGGAACTTCCCGTCCTACAAGGTCGTATACGAGGTGTCCTCAAGCT ATCGACACGACTCGTCTTTGCAGAGCACTTCTAAGCAAAATGCACCTCAG CGCAAAATGTTATGATGGCGAAGTTGGGGAGGTAATGCTCGATGGTGCAG CACTTCGTGCTCGGTGCGTATCGACTTGTCGACAGGTTTGAGAGGTTGGA TCATGTTGCGGGGGTATTTGGCGGACGGGGTCTAAGTTACGGTTAGCCTC ACCTCCCCCTGTCTACGGACAAGCTGCGTCTATATGCTCATTAGTAGTGG AAACCTTTCGCCGTCTATCGGCTGTGTCCATCGATCAATGGAACTCAAGG ATTGTTCCGTCGACTGTACTGGAGCAGCATTTACGTAGTTCCACAGCTAG GCATACTCTCGTGGAGAATGACGCAGTTGTTGTCCACTCAAGGTGTTCGA AAGTGCATGCCAATTTGAATTGCGGTGTACCCAAAGATGTTCGGTTGGTG TGAAGTATGGTTTAGTGCTACAAATACAATGCGCGATGGGCTGACACGCT GTCCATTGCTTTTCCCGTTGTCAGGATCCTCGCACGATGTGCACAGGAAT GGTGCTTGCGGTATCAACTCAAATTTGGCAGTGATGCTGTCGTTCCACTG ACGGCCCTGGTTTCGGAGCTCGCCCTGTTGATGCAAGAGTACACCCAAAT GGCTGGCGTCCGGCCGTTTGGTGTGGCACTCCTGGTGGCAGGATTTGAGC CAGAGGACAATGCAAAAAGTCCACAAGATGATCCGAGCTTCGGCACAGAT GAAGACAGCGGTCGCCCTCAATCGCGACTGTATAAACTAGAACCATCTGG AAGATATTCCGCTTGGAAAGCTGCCGCAATTGGCAAGGGCTCAGCAGCGG CTGAAAACATATTGCAACGAGAACACAAAAGAGTCAAGGACAGGAACGGT GCGCTGGATTTTGCACTATCTGTGGTTCTCCGCTGTGCTTCCAGTGAGAC CAAACGAGCAGACATTGAATTAGCCTTCGTTGAAAATGGGAGAATCCAAA TCGTGGACATGTCATAATTTTTTTTACTAACTACTACAGAGTGACATGGT ATTTGATCCGACGACATATCTCGAGATCTACAACAAGAAAAGTGACTGAG AATTTTTGCATAGGCCTTGTCTTGTCTTTGCGAAGACATGAAATTTTGTT CAAAGCCGTCGGCCTCAAAGGAAGTTCGGCGAAAAAACCGAGTAATAATG GGAAAAGGGTATTTTGAGGTCTAAATTTCAAGATGTGAAATATATAACTC GAGATGAAGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1840:9446..12006+

>mRNA_H-paniculata_contig1840.4510.1 ID=mRNA_H-paniculata_contig1840.4510.1|Name=mRNA_H-paniculata_contig1840.4510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1812bp|location=Sequence derived from alignment at H-paniculata_contig1840:9446..12006+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTAGTAAATGTTGGCCTACGAGACAAATGTTGGCACAGTGGATGCT
GCTGTTTACTGCAACAGCTACGCTGCCCCTCACAATAGCCTCGAGCTCCA
CTTCCCAGCGATGGTTATCTGGAAAGGGTGCTGCATTGGCAACTCGAGGC
GGAGCTGTTAGCAGGGATGACGTGCCTTATTCTTTTTCGCTGACCAGCTT
CAGTCCTCGTGGGAGCTTGACGCAGATTGAATATGCTTCGAACGCAGTGT
TGATGTCTAGTAAATGTTGGCCTACGAGACAAATGTTGGCACAGTGGATG
CTGCTGTTTACTGCAACAGCTACGCTGCCCCTCACAATAGCCTCGAGCTC
CACTTCCCAGCGATGGTTATCTGGAAAGGGTGCTGCATTGGCAACTCGAG
GCGGAGCTGTTAGCAGGGATGACGTGCCTTATTCTTTTTCGCTGACCAGC
TTCAGTCCTCGTGGGAGCTTGACGCAGATTGAATATGCTTCGAACGCAGT
GTTGGAAGGTGCACTTACGGTGGCAATTACGTACGAGGGTGGCGTAGTGA
TGGCGTCCGTTTGCAAGGCAGAATCTCCGCTGGTGGTGGACATCGCGAGA
AGAAAAATCGCGCATGTAGCGGACAGCACTGCCCTCCTCTACTCGGGTCT
GGCAGCAGATTCAAGGAAGGTGCACTTACGGTGGCAATTACGTACGAGGG
TGGCGTAGTGATGGCGTCCGTTTGCAAGGCAGAATCTCCGCTGGTGGTGG
ACATCGCGAGAAGAAAAATCGCGCATGTAGCGGACAGCACTGCCCTCCTC
TACTCGGGTCTGGCAGCAGATTCAAGGATCCTCGCACGATGTGCACAGGA
ATGGTGCTTGCGGTATCAACTCAAATTTGGCAGTGATGCTGTCGTTCCAC
TGACGGCCCTGGTTTCGGAGCTCGCCCTGTTGATGCAAGAGTACACCCAA
ATGGCTGGCGTCCGGCCGTTTGGTGTGGCACTCCTGGTGGCAGGATTTGA
GCCAGAGGACAATGCAAAAAGTCCACAAGATGATCCGAGCTTCGGCACAG
ATGAAGACAGCGGTCGCCCTCAATCGCGACTGTATAAACTAGAACCATCT
GGAAGATATTCCGCTTGGAAAGCTGCCGCAATTGGCAAGGGCTCAGCAGC
GGCTGAAAACATATTGCAACGAGAACACAAAAGAGTCAAGGACAGGAACG
GTGCGCTGGATTTTGCACTATCTGTGGTTCTCCGCTGTGCTTCCAGTGAG
ACCAAACGAGCAGACATTGAATTAGCCTTCGTTGAAAATGGGAGAATCCA
AATCGTGGACATGTCATAAGATCCTCGCACGATGTGCACAGGAATGGTGC
TTGCGGTATCAACTCAAATTTGGCAGTGATGCTGTCGTTCCACTGACGGC
CCTGGTTTCGGAGCTCGCCCTGTTGATGCAAGAGTACACCCAAATGGCTG
GCGTCCGGCCGTTTGGTGTGGCACTCCTGGTGGCAGGATTTGAGCCAGAG
GACAATGCAAAAAGTCCACAAGATGATCCGAGCTTCGGCACAGATGAAGA
CAGCGGTCGCCCTCAATCGCGACTGTATAAACTAGAACCATCTGGAAGAT
ATTCCGCTTGGAAAGCTGCCGCAATTGGCAAGGGCTCAGCAGCGGCTGAA
AACATATTGCAACGAGAACACAAAAGAGTCAAGGACAGGAACGGTGCGCT
GGATTTTGCACTATCTGTGGTTCTCCGCTGTGCTTCCAGTGAGACCAAAC
GAGCAGACATTGAATTAGCCTTCGTTGAAAATGGGAGAATCCAAATCGTG
GACATGTCATAA
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