mRNA_H-paniculata_contig18387.4503.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18387.4503.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT) HSP 1 Score: 136 bits (343), Expect = 7.020e-36 Identity = 72/184 (39.13%), Postives = 103/184 (55.98%), Query Frame = 1
Query: 31 RPDIAYAVDQATRRMEDPCREDFSTCKRIFLYLDTVPDFSITFGGKSNGHGLEGFVYAYWTEDVEDRKSTTGYAFKLNGCAISRCSRNQTLVTWSSAEAEYVAAGEAGKETVDLRELLGSIGFGCRRSTTLFEDNKSAINLSIGSGAHCRTNHIGVCWHGNREWIREGVLTLKYVQTGDQLADI 582
RPD+A AV ++ M P +E + KR+ Y+ ++ + F GKS L G+ A W D++ R+ST+GY F++NG +S CS+ Q VT S+ EAEYVA A +E V LR LL IG + + + EDN+ AI LS H RT HI V +H RE + + + + Y T LAD+
Sbjct: 101 RPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIGEKQDQPSIMNEDNQGAIELSKNPRFHNRTKHIDVAYHFVREKVGDKSINVNYCSTDKMLADV 284
BLAST of mRNA_H-paniculata_contig18387.4503.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT) HSP 1 Score: 136 bits (342), Expect = 4.670e-35 Identity = 70/192 (36.46%), Postives = 112/192 (58.33%), Query Frame = 1
Query: 7 IIFCNAFYRPDIAYAVDQATRRMEDPCREDFSTCKRIFLYLDTVPDFSITFGGKSNGHGLEGFVYAYWTEDVEDRKSTTGYAFKLNGCAISRCSRNQTLVTWSSAEAEYVAAGEAGKETVDLRELLGSIGFGCRRSTTLFEDNKSAINLSIGSGAHCRTNHIGVCWHGNREWIREGVLTLKYVQTGDQLADI 582
+++ ++ RPDI +AV+ + + E ++ KRIF YL ++ + + +N + GF A W D+ DRKST+GY F++NG A+S S+ QT V S+AEAEYVA A +E + +R+LL + + T++EDN+SAI +S H R+ HI + +H R+ + + LT+ Y TG LAD+
Sbjct: 170 LLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADL 360
BLAST of mRNA_H-paniculata_contig18387.4503.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT) HSP 1 Score: 139 bits (350), Expect = 1.240e-34 Identity = 71/192 (36.98%), Postives = 112/192 (58.33%), Query Frame = 1
Query: 7 IIFCNAFYRPDIAYAVDQATRRMEDPCREDFSTCKRIFLYLDTVPDFSITFGGKSNGHGLEGFVYAYWTEDVEDRKSTTGYAFKLNGCAISRCSRNQTLVTWSSAEAEYVAAGEAGKETVDLRELLGSIGFGCRRSTTLFEDNKSAINLSIGSGAHCRTNHIGVCWHGNREWIREGVLTLKYVQTGDQLADI 582
+++ ++ RPDI +AV+ + +P E ++ KRIF YL ++ + + +N + GF A W D+ DRKST+GY F++NG A+S S+ QT V S+AEAEYVA A +E + +R+LL + T++EDN+SAI +S H R+ HI + +H R+ + + LT+ Y TG LAD+
Sbjct: 1059 LLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCV-GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSKNPQFHGRSKHIDIKYHFVRDQVEKKTLTVLYCPTGSMLADL 1249
BLAST of mRNA_H-paniculata_contig18387.4503.1 vs. uniprot
Match: A0A0L9VUJ5_PHAAN (Uncharacterized protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9VUJ5_PHAAN) HSP 1 Score: 130 bits (328), Expect = 1.580e-34 Identity = 71/184 (38.59%), Postives = 112/184 (60.87%), Query Frame = 1
Query: 31 RPDIAYAVDQATRRMEDPCREDFSTCKRIFLYLDTVPDFSITFGGKSNGHGLEGFVYAYWTEDVEDRKSTTGYAFKLNGCAISRCSRNQTLVTWSSAEAEYVAAGEAGKETVDLRELLGSIGFGCRRSTTLFEDNKSAINLSIGSGAHCRTNHIGVCWHGNREWIREGVLTLKYVQTGDQLADI 582
RPDIA+AV +R M +P E ++ KR+ Y+ D ++ FGG + G+V + + D++ RKSTTGY FKL G +S S+ QT+V S+ EAEY+AA +A KE + ++ LL +G + T++ D++SA++++ H RT HIGV +H RE + +G + L+ + T D LAD+
Sbjct: 23 RPDIAHAVGAVSRFMANPGEEHWNAVKRVLRYIKGTSDVALCFGGSK--FIVRGYVDSDYAGDLDKRKSTTGYVFKLAGGVVSWLSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHK-QNKITVYCDSQSALHIARNPAFHSRTKHIGVQYHFVREVVEKGDVDLEKICTKDNLADV 203
BLAST of mRNA_H-paniculata_contig18387.4503.1 vs. uniprot
Match: A0A4S4L493_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4L493_9AGAM) HSP 1 Score: 138 bits (347), Expect = 2.570e-34 Identity = 73/184 (39.67%), Postives = 99/184 (53.80%), Query Frame = 1
Query: 31 RPDIAYAVDQATRRMEDPCREDFSTCKRIFLYLDTVPDFSITFGGKSNGHGLEGFVYAYWTEDVEDRKSTTGYAFKLNGCAISRCSRNQTLVTWSSAEAEYVAAGEAGKETVDLRELLGSIGFGCRRSTTLFEDNKSAINLSIGSGAHCRTNHIGVCWHGNREWIREGVLTLKYVQTGDQLADI 582
RPD+AY V ++ P E R+F YL D + + GK + GL G+V A W DV DR+S +GY FK+ AIS S+ Q SS AEYV+ A KE + LR LL +G C ++T L DN+SA+ ++ H T HIG H E + G L L+YV TG+Q+AD+
Sbjct: 547 RPDLAYTVGALSQHSSSPSEEALHALMRVFKYLRGTSDMKLIYQGKKS-KGLTGYVXADWAGDVNDRRSISGYVFKIAEGAISWSSKKQGSTALSSTXAEYVSGAHAAKELIWLRTLLAELGLPCDKATPLLTDNQSAMAIAQNXVYHALTKHIGAXXHFLXEKVASGELRLEYVPTGEQVADV 729
BLAST of mRNA_H-paniculata_contig18387.4503.1 vs. uniprot
Match: UPI00193C8901 (secreted RxLR effector protein 161-like n=1 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193C8901) HSP 1 Score: 129 bits (324), Expect = 5.940e-34 Identity = 73/191 (38.22%), Postives = 104/191 (54.45%), Query Frame = 1
Query: 10 IFCNAFYRPDIAYAVDQATRRMEDPCREDFSTCKRIFLYLDTVPDFSITFGGKSNGHGLEGFVYAYWTEDVEDRKSTTGYAFKLNGCAISRCSRNQTLVTWSSAEAEYVAAGEAGKETVDLRELLGSIGFGCRRSTTLFEDNKSAINLSIGSGAHCRTNHIGVCWHGNREWIREGVLTLKYVQTGDQLADI 582
+F RPDIA+AV + + + + ++ KRI YL D + + + +EG+V A + ED+E R+STTGY F L A++ ++ Q +VT S+ EAEYVAA A KE + LR LL + C R+T +F DN+S + L S H RT HI V H RE + G + K V T Q AD+
Sbjct: 1 MFLATVTRPDIAFAVGKVSAFLNNHDVNHWNAVKRIIRYLLNTVDRGVLYESGGSNEEIEGYVDADFAEDLETRRSTTGYVFLLGNGAVTWTAQRQKMVTISTTEAEYVAAAAAAKEAIWLRRLLSGLERNCNRATKVFIDNQSTLRLVQNSEFHKRTKHIDVRCHFIREKVLSGKIDTKCVNTTKQKADL 191
BLAST of mRNA_H-paniculata_contig18387.4503.1 vs. uniprot
Match: H3G656_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G656_PHYRM) HSP 1 Score: 129 bits (324), Expect = 6.260e-34 Identity = 70/185 (37.84%), Postives = 103/185 (55.68%), Query Frame = 1
Query: 31 RPDIAYAVDQATRRMEDPCREDFSTCKRIFLYLDTVPDFSITFGGKSNGHGLEGFVYAYWTEDVEDRKSTTGYAFKLNGCAISRCSRNQTLVTWSSAEAEYVAAGEAGKETVDLRELLGSIG-FGCRRSTTLFEDNKSAINLSIGSGAHCRTNHIGVCWHGNREWIREGVLTLKYVQTGDQLADI 582
RPD+A AV ++ DPC + KR+ YL P + F + + G+ G+ A W D+E R+ST+GYAF +NG IS S+ Q V SS EAEY+A EA +E V L+ L +G + +++DN+ +I L+ H RT HI + +H RE + +G + L+Y+ T D LADI
Sbjct: 22 RPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYKDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYISTTDMLADI 205
BLAST of mRNA_H-paniculata_contig18387.4503.1 vs. uniprot
Match: UPI001372DC10 (Ty1/Copia family RNAse HI domain-containing protein n=3 Tax=Bacteria TaxID=2 RepID=UPI001372DC10) HSP 1 Score: 131 bits (329), Expect = 1.220e-33 Identity = 73/185 (39.46%), Postives = 103/185 (55.68%), Query Frame = 1
Query: 31 RPDIAYAVDQATRRMEDPCREDFSTCKRIFLYLDTVPDFSITFGGKSNGHGLEGFVYAYWTEDVEDRKSTTGYAFKLNGCAISRCSRNQTLVTWSSAEAEYVAAGEAGKETVDLRELLGSIG-FGCRRSTTLFEDNKSAINLSIGSGAHCRTNHIGVCWHGNREWIREGVLTLKYVQTGDQLADI 582
RPD+A AV ++ DPC + KR+F Y+ + F S GL+G+ A W D+E R+ST+GYAF +NG IS S+ Q V SS EAEY+A EA +E V L+ L +G + ++EDN+ +I L+ H RT HI + +H RE + +G + L+YV T D LADI
Sbjct: 101 RPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIRGTKTHGLVFQASSED-GLQGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPEFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTLDMLADI 284
BLAST of mRNA_H-paniculata_contig18387.4503.1 vs. uniprot
Match: UPI001E692AC7 (secreted RxLR effector protein 161-like n=1 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E692AC7) HSP 1 Score: 129 bits (323), Expect = 1.270e-33 Identity = 72/184 (39.13%), Postives = 102/184 (55.43%), Query Frame = 1
Query: 31 RPDIAYAVDQATRRMEDPCREDFSTCKRIFLYLDTVPDFSITFGGKSNGHGLEGFVYAYWTEDVEDRKSTTGYAFKLNGCAISRCSRNQTLVTWSSAEAEYVAAGEAGKETVDLRELLGSIGFGCRRSTTLFEDNKSAINLSIGSGAHCRTNHIGVCWHGNREWIREGVLTLKYVQTGDQLADI 582
RPD+ Y+V R ME P + KRI YL + I + LEG+ + + D +DRKST+GY FK+ AIS S+ Q +VT S+ EAEYVAA + V LR++L +G R + T+F DN S+I LS H R HI V +H +R+ ++G++ L + TG+Q ADI
Sbjct: 24 RPDLCYSVCLIARYMERPTEIHLAAAKRILRYLKGTMKYGILYEKGEVSIKLEGWTDSDYVGDSDDRKSTSGYIFKVGSGAISCSSKKQPIVTLSTTEAEYVAAASCACQAVWLRKILKQLGQEQRNANTIFCDNSSSIKLSKNPILHGRCKHIDVRYHFSRDLTKQGIVELVHCSTGEQTADI 207
BLAST of mRNA_H-paniculata_contig18387.4503.1 vs. uniprot
Match: H3GB36_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB36_PHYRM) HSP 1 Score: 132 bits (332), Expect = 1.330e-33 Identity = 73/185 (39.46%), Postives = 103/185 (55.68%), Query Frame = 1
Query: 31 RPDIAYAVDQATRRMEDPCREDFSTCKRIFLYLDTVPDFSITFGGKSNGHGLEGFVYAYWTEDVEDRKSTTGYAFKLNGCAISRCSRNQTLVTWSSAEAEYVAAGEAGKETVDLRELLGSIG-FGCRRSTTLFEDNKSAINLSIGSGAHCRTNHIGVCWHGNREWIREGVLTLKYVQTGDQLADI 582
RPD+A AV ++ DPC + KR+F Y+ I F N GL+G+ A W D+E R+ST+GYAF +NG IS S+ Q V SS EAEY+A EA +E V L+ L +G + ++EDN+ +I L+ H RT HI + +H RE + +G + L+YV T D LAD+
Sbjct: 157 RPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIQGTKTHGIEFQASCND-GLQGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADM 340 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18387.4503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18387.4503.1 >prot_H-paniculata_contig18387.4503.1 ID=prot_H-paniculata_contig18387.4503.1|Name=mRNA_H-paniculata_contig18387.4503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp MRIIFCNAFYRPDIAYAVDQATRRMEDPCREDFSTCKRIFLYLDTVPDFSback to top mRNA from alignment at H-paniculata_contig18387:362..946- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18387.4503.1 ID=mRNA_H-paniculata_contig18387.4503.1|Name=mRNA_H-paniculata_contig18387.4503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=585bp|location=Sequence derived from alignment at H-paniculata_contig18387:362..946- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18387:362..946- >mRNA_H-paniculata_contig18387.4503.1 ID=mRNA_H-paniculata_contig18387.4503.1|Name=mRNA_H-paniculata_contig18387.4503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig18387:362..946- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |