mRNA_H-paniculata_contig18386.4502.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18386.4502.1
Unique NamemRNA_H-paniculata_contig18386.4502.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18386.4502.1 vs. uniprot
Match: D7G3B8_ECTSI (DNA primase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B8_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.410e-18
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 2 
Query:    2 GMGGTAAGQDE------TLDWVFDKRAALRVADTKNTDLVLLEVVMVMLKEQAAARMVALNDELAETSDAIARTMAEAAAAPLL-VDPP 247
            G GG   G D+      TLDWVF++  A RVA   NTDLVLLEVVMVMLKEQAAA+M +L+ ELA+TS+AIARTMAEAA A  L +DPP
Sbjct:  914 GKGGGGVGADDEGEKEDTLDWVFERAEAERVAKGANTDLVLLEVVMVMLKEQAAAKMHSLSLELADTSNAIARTMAEAATADFLALDPP 1002
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BLAST of mRNA_H-paniculata_contig18386.4502.1 vs. uniprot
Match: A0A6H5K157_9PHAE (Toprim domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K157_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.410e-18
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 2 
Query:    2 GMGGTAAGQDE------TLDWVFDKRAALRVADTKNTDLVLLEVVMVMLKEQAAARMVALNDELAETSDAIARTMAEAAAAPLL-VDPP 247
            G GG   G D+      TLDWVF++  A RVA   NTDLVLLEVVMVMLKEQAAA+M +L+ ELA+TS+AIARTMAEAA A  L +DPP
Sbjct:  816 GKGGGGVGADDEREREDTLDWVFERAEAERVAKGANTDLVLLEVVMVMLKEQAAAKMHSLSLELADTSNAIARTMAEAATADFLALDPP 904
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18386.4502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3B8_ECTSI2.410e-1864.04DNA primase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5K157_9PHAE2.410e-1864.04Toprim domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18386contigH-paniculata_contig18386:472..1204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue4.7e-15
Seed eggNOG ortholog2880.D7G3B8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA primase catalytic core, N-terminal domain
EggNOG OGs2S0EV@2759,COG0358@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size356
Cds size351
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18386.4502.1prot_H-paniculata_contig18386.4502.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18386 472..1200 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929425.0974784-CDS-H-paniculata_contig18386:471..6871622929425.0974784-CDS-H-paniculata_contig18386:471..687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18386 472..687 -
1691480855.709729-CDS-H-paniculata_contig18386:471..6871691480855.709729-CDS-H-paniculata_contig18386:471..687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18386 472..687 -
1622929425.1132245-CDS-H-paniculata_contig18386:1065..12001622929425.1132245-CDS-H-paniculata_contig18386:1065..1200Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18386 1066..1200 -
1691480855.7216501-CDS-H-paniculata_contig18386:1065..12001691480855.7216501-CDS-H-paniculata_contig18386:1065..1200Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18386 1066..1200 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929425.1285663-UTR-H-paniculata_contig18386:1200..12041622929425.1285663-UTR-H-paniculata_contig18386:1200..1204Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18386 1201..1204 -
1691480855.730223-UTR-H-paniculata_contig18386:1200..12041691480855.730223-UTR-H-paniculata_contig18386:1200..1204Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18386 1201..1204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18386.4502.1

>prot_H-paniculata_contig18386.4502.1 ID=prot_H-paniculata_contig18386.4502.1|Name=mRNA_H-paniculata_contig18386.4502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MGGTAAGQDETLDWVFDKRAALRVADTKNTDLVLLEVVMVMLKEQAAARM
VALNDELAETSDAIARTMAEAAAAPLLVDPPLPLFLASTDNVAAASAMAG
TSGTDNVDDVMGDAGPP
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mRNA from alignment at H-paniculata_contig18386:472..1204-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18386.4502.1 ID=mRNA_H-paniculata_contig18386.4502.1|Name=mRNA_H-paniculata_contig18386.4502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=733bp|location=Sequence derived from alignment at H-paniculata_contig18386:472..1204- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGATGGGTGGGACGGCGGCGGGGCAGGACGAGACGCTGGATTGGGTTT
TCGACAAGAGGGCGGCTTTGCGTGTGGCGGATACCAAGAACACTGACCTG
GTGCTCCTGGAAGTTGTGATGGTGATGCTCAAGGAGCAGGTATGTAGAAG
TAAAGCCGGGGGGAGGGGGGGGGGGGGGGTCATTTTTGTTTTCGGTCGTT
TGATGTGTGACCGTTTGGAAAAAAATGGCTGTTAGTTACGTTGGAAGAGG
CAAAAGTATTTCGATATGCCTGGTATTGCTTGTGTTTAGTAAACAAGAGC
TAGGGCTATCCGCGCTACCTGCACAGTATGTCAGTATACGTTGTAGGTCC
TTATTGATATTGCGTATAAACCACCGCATGGTTGGTTTCTACAAGCTGAC
TGGTTGTCCCCGACCCACACGATTGGATCGGTCCGTAAATCTTTGTCTCT
GTCTCTCTCGCGTTCCCTCGTTCTCTCGTTCTCTCGTTCTATCACGCACG
CGACAACTCTTGTGTAGGCGGCGGCCAGAATGGTGGCTTTGAACGACGAG
CTCGCCGAAACCAGCGACGCCATCGCGCGCACCATGGCCGAGGCGGCAGC
CGCGCCGCTGTTGGTGGACCCACCGTTACCGCTTTTTCTCGCTTCGACAG
ACAATGTCGCCGCCGCTAGCGCGATGGCAGGAACAAGTGGCACCGACAAT
GTCGACGATGTAATGGGCGATGCGGGACCGCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig18386:472..1204-

>mRNA_H-paniculata_contig18386.4502.1 ID=mRNA_H-paniculata_contig18386.4502.1|Name=mRNA_H-paniculata_contig18386.4502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig18386:472..1204- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTGGGACGGCGGCGGGGCAGGACGAGACGCTGGATTGGGTTTTCGA
CAAGAGGGCGGCTTTGCGTGTGGCGGATACCAAGAACACTGACCTGGTGC
TCCTGGAAGTTGTGATGGTGATGCTCAAGGAGCAGATGGGTGGGACGGCG
GCGGGGCAGGACGAGACGCTGGATTGGGTTTTCGACAAGAGGGCGGCTTT
GCGTGTGGCGGATACCAAGAACACTGACCTGGTGCTCCTGGAAGTTGTGA
TGGTGATGCTCAAGGAGCAGGCGGCGGCCAGAATGGTGGCTTTGAACGAC
GAGCTCGCCGAAACCAGCGACGCCATCGCGCGCACCATGGCCGAGGCGGC
AGCCGCGCCGCTGTTGGTGGACCCACCGTTACCGCTTTTTCTCGCTTCGA
CAGACAATGTCGCCGCCGCTAGCGCGATGGCAGGAACAAGTGGCACCGAC
AATGTCGACGATGTAATGGGCGATGCGGGACCGCCGGCGGCGGCCAGAAT
GGTGGCTTTGAACGACGAGCTCGCCGAAACCAGCGACGCCATCGCGCGCA
CCATGGCCGAGGCGGCAGCCGCGCCGCTGTTGGTGGACCCACCGTTACCG
CTTTTTCTCGCTTCGACAGACAATGTCGCCGCCGCTAGCGCGATGGCAGG
AACAAGTGGCACCGACAATGTCGACGATGTAATGGGCGATGCGGGACCGC
CG
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