mRNA_H-paniculata_contig18364.4498.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18364.4498.1
Unique NamemRNA_H-paniculata_contig18364.4498.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18364.4498.1 vs. uniprot
Match: A0A6H5KY21_9PHAE (CBF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY21_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.400e-27
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:    1 RLLSALLTGVNRARPYLPPGDPGVEGRTASLFRVVHTGGFATATQALSLLFQVI 162
            +LLSALLTGVNRARPYLPPGDPGVEGRTASLFRV HTGGFATATQALSLLFQV+
Sbjct:   41 KLLSALLTGVNRARPYLPPGDPGVEGRTASLFRVAHTGGFATATQALSLLFQVV 94
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BLAST of mRNA_H-paniculata_contig18364.4498.1 vs. uniprot
Match: D8LPZ6_ECTSI (CBF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ6_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 7.230e-25
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    1 RLLSALLTGVNRARPYLPPGDPGVEGRTASLFRVVHTGGFATATQALSLLFQVI 162
            +LLSALLTGVNRARPYLPPGDPGVEGRTASLFRV HTGGFAT TQALSLLFQV+
Sbjct:  565 KLLSALLTGVNRARPYLPPGDPGVEGRTASLFRVAHTGGFATTTQALSLLFQVV 618
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BLAST of mRNA_H-paniculata_contig18364.4498.1 vs. uniprot
Match: A0A835ZC94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC94_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.340e-11
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 RLLSALLTGVNRARPYLPPGDPGVEGRTASLFRVVHTGGFATATQALSLLFQVI 162
            RLLSALLTGVNRA PYL  G   +      LF++VH   F+TATQAL LLFQVI
Sbjct:  535 RLLSALLTGVNRAHPYLDSGSEALATHVDELFKLVHQSNFSTATQALMLLFQVI 588
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BLAST of mRNA_H-paniculata_contig18364.4498.1 vs. uniprot
Match: K0SQJ6_THAOC (CBF domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SQJ6_THAOC)

HSP 1 Score: 65.9 bits (159), Expect = 3.410e-11
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 RLLSALLTGVNRARPYLPPGDPGVEGRTASLFRVVHTGGFATATQALSLLFQV 159
            RLLSALLTGVNRA PYLP  D G+E    +L+R+ HT   A ATQAL LLFQ+
Sbjct:  412 RLLSALLTGVNRAHPYLPLKDAGMERHIDALYRISHTAPPAAATQALMLLFQL 464
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BLAST of mRNA_H-paniculata_contig18364.4498.1 vs. uniprot
Match: A0A0S7IL10_9TELE (CEBPZ (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7IL10_9TELE)

HSP 1 Score: 63.5 bits (153), Expect = 5.480e-11
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 RLLSALLTGVNRARPYLPPGDPGVEGRTASLFRVVHTGGFATATQALSLLFQVI 162
            ++LSALLTGVNRA PY   GD  V  +  +LFRVVH   F TA QAL LLFQV+
Sbjct:  126 KMLSALLTGVNRAYPYADAGDEKVREQLDTLFRVVHLAKFNTAVQALMLLFQVL 179
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BLAST of mRNA_H-paniculata_contig18364.4498.1 vs. uniprot
Match: A0A0S7IHJ8_9TELE (CEBPZ (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7IHJ8_9TELE)

HSP 1 Score: 63.5 bits (153), Expect = 1.310e-10
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 RLLSALLTGVNRARPYLPPGDPGVEGRTASLFRVVHTGGFATATQALSLLFQVI 162
            ++LSALLTGVNRA PY   GD  V  +  +LFRVVH   F TA QAL LLFQV+
Sbjct:  126 KMLSALLTGVNRAYPYADAGDEKVREQLDTLFRVVHLAKFNTAVQALMLLFQVL 179
[Close]
BLAST of mRNA_H-paniculata_contig18364.4498.1 vs. uniprot
Match: B8BRW1_THAPS (CBF domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRW1_THAPS)

HSP 1 Score: 63.9 bits (154), Expect = 1.630e-10
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 RLLSALLTGVNRARPYLPPGDPGVEGRTASLFRVVHTGGFATATQALSLLFQV 159
            RLLSALLTGVNRA PYLP  D  +E    +L+R+ HT   A ATQAL LLFQ+
Sbjct:  423 RLLSALLTGVNRAHPYLPQKDATMEDHIDALYRISHTAPPAAATQALMLLFQL 475
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BLAST of mRNA_H-paniculata_contig18364.4498.1 vs. uniprot
Match: A0A3Q3EI64_KRYMA (CCAAT enhancer binding protein zeta n=2 Tax=Kryptolebias marmoratus TaxID=37003 RepID=A0A3Q3EI64_KRYMA)

HSP 1 Score: 63.9 bits (154), Expect = 1.630e-10
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 RLLSALLTGVNRARPYLPPGDPGVEGRTASLFRVVHTGGFATATQALSLLFQVI 162
            ++LSALLTGVNRA PY   GD  V+ +  SLFRVVH   F TA QAL LLFQV+
Sbjct:  475 KMLSALLTGVNRAYPYAGAGDQKVKEQLDSLFRVVHLTRFNTAVQALMLLFQVL 528
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BLAST of mRNA_H-paniculata_contig18364.4498.1 vs. uniprot
Match: A0A3B5KZV5_9TELE (CBF domain-containing protein n=1 Tax=Xiphophorus couchianus TaxID=32473 RepID=A0A3B5KZV5_9TELE)

HSP 1 Score: 63.5 bits (153), Expect = 2.210e-10
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 RLLSALLTGVNRARPYLPPGDPGVEGRTASLFRVVHTGGFATATQALSLLFQVI 162
            ++LSALLTGVNRA PY   GD  V  +  +LFRVVH   F TA QAL LLFQV+
Sbjct:  388 KMLSALLTGVNRAYPYADAGDEKVREQLDTLFRVVHMAKFNTAVQALMLLFQVL 441
[Close]
BLAST of mRNA_H-paniculata_contig18364.4498.1 vs. uniprot
Match: M3ZZ86_XIPMA (CBF domain-containing protein n=1 Tax=Xiphophorus maculatus TaxID=8083 RepID=M3ZZ86_XIPMA)

HSP 1 Score: 63.5 bits (153), Expect = 2.230e-10
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 RLLSALLTGVNRARPYLPPGDPGVEGRTASLFRVVHTGGFATATQALSLLFQVI 162
            ++LSALLTGVNRA PY   GD  V  +  +LFRVVH   F TA QAL LLFQV+
Sbjct:  413 KMLSALLTGVNRAYPYADAGDEKVREQLDTLFRVVHMAKFNTAVQALMLLFQVL 466
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18364.4498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY21_9PHAE1.400e-2794.44CBF domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LPZ6_ECTSI7.230e-2592.59CBF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZC94_9STRA1.340e-1162.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0SQJ6_THAOC3.410e-1164.15CBF domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A0S7IL10_9TELE5.480e-1161.11CEBPZ (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
A0A0S7IHJ8_9TELE1.310e-1061.11CEBPZ (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
B8BRW1_THAPS1.630e-1062.26CBF domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A3Q3EI64_KRYMA1.630e-1062.96CCAAT enhancer binding protein zeta n=2 Tax=Krypto... [more]
A0A3B5KZV5_9TELE2.210e-1061.11CBF domain-containing protein n=1 Tax=Xiphophorus ... [more]
M3ZZ86_XIPMA2.230e-1061.11CBF domain-containing protein n=1 Tax=Xiphophorus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18364contigH-paniculata_contig18364:3902..4066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue1e-20
Seed eggNOG ortholog2880.D8LPZ6
Preferred nameCEBPZ
KEGG koko:K14572,ko:K14832
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000027,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005911,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006364,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009553,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040008,GO:0042254,GO:0042255,GO:0042273,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046872,GO:0048229,GO:0048518,GO:0048522,GO:0048638,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,COG5593@1,KOG1808@2759,KOG2038@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929424.5014887-CDS-H-paniculata_contig18364:3901..40661622929424.5014887-CDS-H-paniculata_contig18364:3901..4066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18364 3902..4066 +
1691480855.3917143-CDS-H-paniculata_contig18364:3901..40661691480855.3917143-CDS-H-paniculata_contig18364:3901..4066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18364 3902..4066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18364.4498.1prot_H-paniculata_contig18364.4498.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18364 3902..4066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18364.4498.1

>prot_H-paniculata_contig18364.4498.1 ID=prot_H-paniculata_contig18364.4498.1|Name=mRNA_H-paniculata_contig18364.4498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
RLLSALLTGVNRARPYLPPGDPGVEGRTASLFRVVHTGGFATATQALSLL
FQVI*
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mRNA from alignment at H-paniculata_contig18364:3902..4066+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18364.4498.1 ID=mRNA_H-paniculata_contig18364.4498.1|Name=mRNA_H-paniculata_contig18364.4498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at H-paniculata_contig18364:3902..4066+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTGCTGTCCGCGCTGCTCACTGGCGTGAACCGTGCGAGGCCGTATTT
GCCACCCGGGGACCCCGGAGTCGAGGGGAGGACAGCGTCGTTGTTCAGGG
TGGTGCACACGGGAGGGTTTGCCACTGCTACCCAGGCGTTGTCGCTGCTG
TTTCAGGTTATTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig18364:3902..4066+

>mRNA_H-paniculata_contig18364.4498.1 ID=mRNA_H-paniculata_contig18364.4498.1|Name=mRNA_H-paniculata_contig18364.4498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig18364:3902..4066+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTGCTGTCCGCGCTGCTCACTGGCGTGAACCGTGCGAGGCCGTATTT
GCCACCCGGGGACCCCGGAGTCGAGGGGAGGACAGCGTCGTTGTTCAGGG
TGGTGCACACGGGAGGGTTTGCCACTGCTACCCAGGCGTTGTCGCTGCTG
TTTCAGGTTATTTGAAGGTTGCTGTCCGCGCTGCTCACTGGCGTGAACCG
TGCGAGGCCGTATTTGCCACCCGGGGACCCCGGAGTCGAGGGGAGGACAG
CGTCGTTGTTCAGGGTGGTGCACACGGGAGGGTTTGCCACTGCTACCCAG
GCGTTGTCGCTGCTGTTTCAGGTTATTTGA
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