mRNA_H-paniculata_contig18364.4497.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18364.4497.1
Unique NamemRNA_H-paniculata_contig18364.4497.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18364.4497.1 vs. uniprot
Match: D8LPZ6_ECTSI (CBF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ6_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 8.080e-19
Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 IHLLQTLLYKHPAMKGVVVREVQQYLHRPGLQPKAVYAGVIFLTQV 138
            IHLLQ LL KHPAMKGVVVREVQQYLHRPGLQPKAVYAG+IFL QV
Sbjct:  454 IHLLQRLLAKHPAMKGVVVREVQQYLHRPGLQPKAVYAGIIFLNQV 499
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BLAST of mRNA_H-paniculata_contig18364.4497.1 vs. uniprot
Match: A0A7S3XQ93_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ93_HETAK)

HSP 1 Score: 63.9 bits (154), Expect = 2.790e-11
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    4 HLLQTLLYKHPAMKGVVVREVQQYLHRPGLQPKAVYAGVIFLTQV 138
            H L+ LL  HP MKGVV REVQQ+LHRP LQP+AV+A + FL Q+
Sbjct:   19 HRLRELLRAHPGMKGVVAREVQQFLHRPNLQPRAVHAAIAFLNQM 63
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BLAST of mRNA_H-paniculata_contig18364.4497.1 vs. uniprot
Match: A0A4D9CW61_9STRA (CBF domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CW61_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.410e-9
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    4 HLLQTLLYKHPAMKGVVVREVQQYLHRPGLQPKAVYAGVIFLTQV 138
            +LL+ LL  HPAMK VV REVQQ+LHRP LQP+ +Y G+ FL Q+
Sbjct:  329 YLLRRLLAAHPAMKVVVAREVQQFLHRPNLQPRPLYNGISFLGQL 373
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BLAST of mRNA_H-paniculata_contig18364.4497.1 vs. uniprot
Match: A0A835ZC94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC94_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.230e-8
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:   49 VVVREVQQYLHRPGLQPKAVYAGVIFLTQV 138
            VVVREVQQYLHRPGL PKA+YAGV+FL+QV
Sbjct:  472 VVVREVQQYLHRPGLAPKALYAGVVFLSQV 501
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BLAST of mRNA_H-paniculata_contig18364.4497.1 vs. uniprot
Match: A0A3Q4GUR0_NEOBR (CCAAT enhancer binding protein zeta n=1 Tax=Neolamprologus brichardi TaxID=32507 RepID=A0A3Q4GUR0_NEOBR)

HSP 1 Score: 56.2 bits (134), Expect = 5.690e-8
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    4 HLLQTLLYKHPAMKGVVVREVQQYLHRPGLQPKAVYAGVIFLTQV 138
            +LL+TLL+KHP MKGVV  EV++ L RP + PKA Y  V FL+QV
Sbjct:  338 YLLETLLHKHPNMKGVVCCEVERLLFRPNISPKAQYYAVCFLSQV 382
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BLAST of mRNA_H-paniculata_contig18364.4497.1 vs. uniprot
Match: K7FGK1_PELSI (CBF domain-containing protein n=2 Tax=Pelodiscus sinensis TaxID=13735 RepID=K7FGK1_PELSI)

HSP 1 Score: 56.2 bits (134), Expect = 5.700e-8
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    4 HLLQTLLYKHPAMKGVVVREVQQYLHRPGLQPKAVYAGVIFLTQV 138
            +LL+TLLYKHP MKGVV  EV++ L+R  + PKA Y  + FL Q+
Sbjct:  405 YLLETLLYKHPNMKGVVCNEVERLLYRSNISPKAQYYAICFLNQI 449
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BLAST of mRNA_H-paniculata_contig18364.4497.1 vs. uniprot
Match: I3KR14_ORENI (CCAAT enhancer binding protein zeta n=19 Tax=Pseudocrenilabrinae TaxID=318546 RepID=I3KR14_ORENI)

HSP 1 Score: 56.2 bits (134), Expect = 5.700e-8
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    4 HLLQTLLYKHPAMKGVVVREVQQYLHRPGLQPKAVYAGVIFLTQV 138
            +LL+TLL+KHP MKGVV  EV++ L RP + PKA Y  V FL+QV
Sbjct:  460 YLLETLLHKHPNMKGVVCCEVERLLFRPNISPKAQYYAVCFLSQV 504
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BLAST of mRNA_H-paniculata_contig18364.4497.1 vs. uniprot
Match: UPI0018648D92 (CCAAT/enhancer-binding protein zeta n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI0018648D92)

HSP 1 Score: 55.5 bits (132), Expect = 1.070e-7
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    4 HLLQTLLYKHPAMKGVVVREVQQYLHRPGLQPKAVYAGVIFLTQV 138
            +LL+TLL+KHP MKGVV  EV++ + RP + PKA Y  V FL QV
Sbjct:  418 YLLETLLHKHPNMKGVVCSEVERLMFRPNVHPKAQYYAVCFLNQV 462
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BLAST of mRNA_H-paniculata_contig18364.4497.1 vs. uniprot
Match: F6XCZ0_ORNAN (CCAAT enhancer binding protein zeta n=2 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=F6XCZ0_ORNAN)

HSP 1 Score: 55.1 bits (131), Expect = 1.460e-7
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    4 HLLQTLLYKHPAMKGVVVREVQQYLHRPGLQPKAVYAGVIFLTQV 138
            HLL+TLL+KHP MKGVV  EV++ L+R  + PKA Y  V FL Q+
Sbjct:  424 HLLETLLFKHPNMKGVVCGEVERLLYRVNVSPKAQYYSVCFLNQM 468
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BLAST of mRNA_H-paniculata_contig18364.4497.1 vs. uniprot
Match: A0A8C5SD29_LATLA (CBF domain-containing protein n=1 Tax=Laticauda laticaudata TaxID=8630 RepID=A0A8C5SD29_LATLA)

HSP 1 Score: 54.7 bits (130), Expect = 1.990e-7
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    4 HLLQTLLYKHPAMKGVVVREVQQYLHRPGLQPKAVYAGVIFLTQV 138
            +LL+TLL+KHP MKGVV  EV++ L+R  + PKA Y  V FL Q+
Sbjct:  363 YLLETLLHKHPNMKGVVCNEVERLLYRSNISPKAQYYAVCFLNQI 407
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18364.4497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPZ6_ECTSI8.080e-1991.30CBF domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3XQ93_HETAK2.790e-1164.44Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9CW61_9STRA3.410e-962.22CBF domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A835ZC94_9STRA2.230e-886.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3Q4GUR0_NEOBR5.690e-860.00CCAAT enhancer binding protein zeta n=1 Tax=Neolam... [more]
K7FGK1_PELSI5.700e-855.56CBF domain-containing protein n=2 Tax=Pelodiscus s... [more]
I3KR14_ORENI5.700e-860.00CCAAT enhancer binding protein zeta n=19 Tax=Pseud... [more]
UPI0018648D921.070e-757.78CCAAT/enhancer-binding protein zeta n=1 Tax=Megalo... [more]
F6XCZ0_ORNAN1.460e-757.78CCAAT enhancer binding protein zeta n=2 Tax=Ornith... [more]
A0A8C5SD29_LATLA1.990e-755.56CBF domain-containing protein n=1 Tax=Laticauda la... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18364contigH-paniculata_contig18364:196..333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue2.4e-15
Seed eggNOG ortholog2880.D8LPZ6
Preferred nameCEBPZ
KEGG koko:K14572,ko:K14832
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000027,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005911,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006364,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009553,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040008,GO:0042254,GO:0042255,GO:0042273,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046872,GO:0048229,GO:0048518,GO:0048522,GO:0048638,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,COG5593@1,KOG1808@2759,KOG2038@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929424.445206-CDS-H-paniculata_contig18364:195..3331622929424.445206-CDS-H-paniculata_contig18364:195..333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18364 196..333 +
1691480855.379922-CDS-H-paniculata_contig18364:195..3331691480855.379922-CDS-H-paniculata_contig18364:195..333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18364 196..333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18364.4497.1prot_H-paniculata_contig18364.4497.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18364 196..333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18364.4497.1

>prot_H-paniculata_contig18364.4497.1 ID=prot_H-paniculata_contig18364.4497.1|Name=mRNA_H-paniculata_contig18364.4497.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
IHLLQTLLYKHPAMKGVVVREVQQYLHRPGLQPKAVYAGVIFLTQV
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mRNA from alignment at H-paniculata_contig18364:196..333+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18364.4497.1 ID=mRNA_H-paniculata_contig18364.4497.1|Name=mRNA_H-paniculata_contig18364.4497.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at H-paniculata_contig18364:196..333+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCACTTGCTCCAGACTCTCTTGTACAAGCACCCGGCCATGAAAGGCGT
GGTTGTTCGAGAGGTGCAGCAGTATTTGCACCGGCCTGGCCTGCAGCCGA
AGGCTGTCTACGCTGGGGTCATCTTCCTTACTCAGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig18364:196..333+

>mRNA_H-paniculata_contig18364.4497.1 ID=mRNA_H-paniculata_contig18364.4497.1|Name=mRNA_H-paniculata_contig18364.4497.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig18364:196..333+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCACTTGCTCCAGACTCTCTTGTACAAGCACCCGGCCATGAAAGGCGT
GGTTGTTCGAGAGGTGCAGCAGTATTTGCACCGGCCTGGCCTGCAGCCGA
AGGCTGTCTACGCTGGGGTCATCTTCCTTACTCAGGTCATTCACTTGCTC
CAGACTCTCTTGTACAAGCACCCGGCCATGAAAGGCGTGGTTGTTCGAGA
GGTGCAGCAGTATTTGCACCGGCCTGGCCTGCAGCCGAAGGCTGTCTACG
CTGGGGTCATCTTCCTTACTCAGGTC
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