mRNA_H-paniculata_contig1836.4495.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1836.4495.1
Unique NamemRNA_H-paniculata_contig1836.4495.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1836.4495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1836contigH-paniculata_contig1836:3763..4312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size551
Cds size405
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929424.2233806-CDS-H-paniculata_contig1836:3762..41671622929424.2233806-CDS-H-paniculata_contig1836:3762..4167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1836 3763..4167 +
1691480855.251089-CDS-H-paniculata_contig1836:3762..41671691480855.251089-CDS-H-paniculata_contig1836:3762..4167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1836 3763..4167 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929424.2363179-UTR-H-paniculata_contig1836:4167..43121622929424.2363179-UTR-H-paniculata_contig1836:4167..4312Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1836 4168..4312 +
1691480855.2624574-UTR-H-paniculata_contig1836:4167..43121691480855.2624574-UTR-H-paniculata_contig1836:4167..4312Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1836 4168..4312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1836.4495.1prot_H-paniculata_contig1836.4495.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1836 3763..4167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1836.4495.1

>prot_H-paniculata_contig1836.4495.1 ID=prot_H-paniculata_contig1836.4495.1|Name=mRNA_H-paniculata_contig1836.4495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
GSEAEDQRTRGSRSRGEKDGGDCVRLPDFNSCAGSNCTSASDATNDGTIA
SRWCRNQRERERWHGIGRRCGGGAGIWSSRDHFDKLSGGRSSDCCVSGCL
NCSLSARHAPLGSRKQKTPRRTKNKARQENTHIC*
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mRNA from alignment at H-paniculata_contig1836:3763..4312+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1836.4495.1 ID=mRNA_H-paniculata_contig1836.4495.1|Name=mRNA_H-paniculata_contig1836.4495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=550bp|location=Sequence derived from alignment at H-paniculata_contig1836:3763..4312+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATCAGAAGCGGAAGATCAGAGAACAAGGGGTAGCCGCAGCCGTGGTGA
AAAAGATGGGGGTGATTGCGTCCGGCTCCCCGACTTCAACAGCTGCGCCG
GTAGTAATTGCACCTCTGCCAGCGACGCCACCAACGATGGCACAATCGCC
TCTCGCTGGTGCAGGAATCAACGGGAGCGTGAACGGTGGCATGGCATCGG
CAGGAGATGCGGCGGTGGTGCCGGCATCTGGAGCAGTCGCGATCACTTCG
ACAAGCTCAGCGGCGGCCGAAGCTCCGATTGTTGTGTCAGTGGGTGCTTG
AACTGCTCGCTCTCTGCGCGCCATGCGCCGCTAGGAAGCAGGAAGCAGAA
AACACCCCGAAGGACGAAGAACAAAGCAAGACAAGAAAATACGCATATTT
GTTAAAAATCTTGCCTTGGCGCGATATTTCCCATGTCTGAAAAGTATACA
CTTTCCTTCGTATATACCATGGGTTCTCCTGCAGGGGAGACCTCGAATGA
GAGGCCGGCTATTGATAGTTTTTTTTTTATTGAGGACAGCCTTGTAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig1836:3763..4312+

>mRNA_H-paniculata_contig1836.4495.1 ID=mRNA_H-paniculata_contig1836.4495.1|Name=mRNA_H-paniculata_contig1836.4495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig1836:3763..4312+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATCAGAAGCGGAAGATCAGAGAACAAGGGGTAGCCGCAGCCGTGGTGA
AAAAGATGGGGGTGATTGCGTCCGGCTCCCCGACTTCAACAGCTGCGCCG
GTAGTAATTGCACCTCTGCCAGCGACGCCACCAACGATGGCACAATCGCC
TCTCGCTGGTGCAGGAATCAACGGGAGCGTGAACGGTGGCATGGCATCGG
CAGGAGATGCGGCGGTGGTGCCGGCATCTGGAGCAGTCGCGATCACTTCG
ACAAGCTCAGCGGCGGCCGAAGCTCCGATTGTTGTGTCAGTGGGTGCTTG
AACTGCTCGCTCTCTGCGCGCCATGCGCCGCTAGGAAGCAGGAAGCAGAA
AACACCCCGAAGGACGAAGAACAAAGCAAGACAAGAAAATACGCATATTT
GTTAAGGATCAGAAGCGGAAGATCAGAGAACAAGGGGTAGCCGCAGCCGT
GGTGAAAAAGATGGGGGTGATTGCGTCCGGCTCCCCGACTTCAACAGCTG
CGCCGGTAGTAATTGCACCTCTGCCAGCGACGCCACCAACGATGGCACAA
TCGCCTCTCGCTGGTGCAGGAATCAACGGGAGCGTGAACGGTGGCATGGC
ATCGGCAGGAGATGCGGCGGTGGTGCCGGCATCTGGAGCAGTCGCGATCA
CTTCGACAAGCTCAGCGGCGGCCGAAGCTCCGATTGTTGTGTCAGTGGGT
GCTTGAACTGCTCGCTCTCTGCGCGCCATGCGCCGCTAGGAAGCAGGAAG
CAGAAAACACCCCGAAGGACGAAGAACAAAGCAAGACAAGAAAATACGCA
TATTTGTTAA
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