mRNA_H-paniculata_contig18350.4494.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18350.4494.1
Unique NamemRNA_H-paniculata_contig18350.4494.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18350.4494.1 vs. uniprot
Match: D7G4J4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J4_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 9.310e-54
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = 1 
Query:   40 GDAGAVCVSPQA--LTSDDFQCNICWELLARPVTLVCGHTACESCMAKYLRTQAQAQARIGNLRANRISCPAGCQRMIPLVLPQVTTMVQKLLTRGFPKLYRQRLEEAESDNALVTQV 387
            G+ G V  +P+A  LT DDFQCNICWE+LARPVTL CGHTACESCMAKYLR QAQAQA+IGNLRANRISCPAGCQRMIPLVLP+VTTMVQKLLTRGFP  YR+RL+E E + ALV+QV
Sbjct:  169 GEVGFVA-APRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNLRANRISCPAGCQRMIPLVLPEVTTMVQKLLTRGFPSAYRERLQETEPERALVSQV 285
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BLAST of mRNA_H-paniculata_contig18350.4494.1 vs. uniprot
Match: A0A6H5JAA6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAA6_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 9.760e-54
Identity = 94/122 (77.05%), Postives = 106/122 (86.89%), Query Frame = 1 
Query:   28 GDVSGDAGAVCVSPQA--LTSDDFQCNICWELLARPVTLVCGHTACESCMAKYLRTQAQAQARIGNLRANRISCPAGCQRMIPLVLPQVTTMVQKLLTRGFPKLYRQRLEEAESDNALVTQV 387
            G+  G+ G V  +P+A  LT DDFQCNICWE+LARPVTL CGHTACESCMAKYLR QAQAQA+IGN+RANRISCPAGCQRMIPLVLP+VTTMVQKLLTRGFP  YR+RL+E E + ALV+QV
Sbjct:  420 GEEGGEVGFVA-APRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNVRANRISCPAGCQRMIPLVLPEVTTMVQKLLTRGFPSAYRERLQETEPERALVSQV 540
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BLAST of mRNA_H-paniculata_contig18350.4494.1 vs. uniprot
Match: A0A836CBF7_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBF7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.900e-10
Identity = 36/95 (37.89%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:   91 FQCNICWELLARPVTLVCGHTACESCMAKYLRTQAQAQARIGNLRANRI---SCPAGCQRMIPLVLPQVTTMVQKLLTRGFPKLYRQRLEEAESD 366
              C IC ELL RPVTL CGHTACE C A++L     +  R     A  +   +CPAGC   + L LP V+ ++ K++        ++R  +A  D
Sbjct:  289 LDCPICLELLYRPVTLPCGHTACELCFARFLTPFTPSTRRRAGASARALGDPACPAGCSTPLALALPAVSCVLAKVIDARPLDAAQRRARDAHYD 383
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BLAST of mRNA_H-paniculata_contig18350.4494.1 vs. uniprot
Match: UPI0014586421 (bifunctional apoptosis regulator-like isoform X1 n=2 Tax=Pecten maximus TaxID=6579 RepID=UPI0014586421)

HSP 1 Score: 54.3 bits (129), Expect = 5.680e-6
Identity = 28/93 (30.11%), Postives = 47/93 (50.54%), Query Frame = 1 
Query:   88 DFQCNICWELLARPVTLVCGHTACESCMAKYLRTQAQAQARIGNLRANRISCPAGCQRMIPLVLPQVTTMVQKLLTRGFPKLYRQRLEEAESD 366
            + +C  C+ELL  P TLVCGHT C  C+AK+  T            + R  CP           P+V  +++ +L + +P+   +R++E ++D
Sbjct:    8 EAKCGCCFELLVEPTTLVCGHTFCRHCLAKWTVT------------SGRRLCPTCKSEWRGS--PKVNIIIRAMLEKSYPQRLEERIKEVDTD 86
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BLAST of mRNA_H-paniculata_contig18350.4494.1 vs. uniprot
Match: A0A7S3XSY9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSY9_HETAK)

HSP 1 Score: 49.7 bits (117), Expect = 4.010e-5
Identity = 27/89 (30.34%), Postives = 44/89 (49.44%), Query Frame = 1 
Query:   88 DFQCNICWELLARPVTLVCGHTACESCMAKYLRTQAQAQARIGNLRANRISCPAGCQRMIPLVLPQVTTMVQKLLTRGFPKLYRQRLEE 354
            +F+CN+C  LL  P +L CGH+ C++C+ K L  + +             SC A C      V   V   +Q  +++ + KLY +R +E
Sbjct:   16 EFECNVCLNLLFEPTSLPCGHSYCKACLKKTLEFKQECP-----------SCRAPCLAEAAGVATNVA--LQTFISQNYSKLYEERRKE 91
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BLAST of mRNA_H-paniculata_contig18350.4494.1 vs. uniprot
Match: A0A210QXR6_MIZYE (Bifunctional apoptosis regulator n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210QXR6_MIZYE)

HSP 1 Score: 51.6 bits (122), Expect = 4.960e-5
Identity = 26/93 (27.96%), Postives = 48/93 (51.61%), Query Frame = 1 
Query:   88 DFQCNICWELLARPVTLVCGHTACESCMAKYLRTQAQAQARIGNLRANRISCPAGCQRMIPLVLPQVTTMVQKLLTRGFPKLYRQRLEEAESD 366
            + +C  C+ELL  P TLVCGHT C+ C+A++  T  Q + +         +C  G +       P+V  +++ +L   + +    R++E ++D
Sbjct:   14 EAECGCCFELLVEPTTLVCGHTFCKHCLARWTVTSGQRRCQ---------TCKQGWRGS-----PKVNIVLRNMLQNAWSQKMADRVQEVDTD 92
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BLAST of mRNA_H-paniculata_contig18350.4494.1 vs. uniprot
Match: UPI001EAFB019 (uncharacterized protein LOC124127995 n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAFB019)

HSP 1 Score: 51.6 bits (122), Expect = 5.370e-5
Identity = 31/93 (33.33%), Postives = 48/93 (51.61%), Query Frame = 1 
Query:   70 QALTSDDFQCNICWELLARPVTLVCGHTACESCMAKYLRTQAQAQARIGNLRANRISCPAGCQRMIPLVLPQVTTMVQKLLTRGFPKLYRQRL 348
            ++L  +   C+IC E    P TL CGHT C+ C+ K+L+T+  A      +RA  I CP  C++M  +  PQ    V++ + +  P    Q L
Sbjct:   48 ESLNENFLTCSICTEGYKDPCTLTCGHTLCQGCLGKFLKTRQDA------IRAKSIPCPY-CRQMTRV--PQTDRPVEEWVKQIKPSFLIQGL 131
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BLAST of mRNA_H-paniculata_contig18350.4494.1 vs. uniprot
Match: A0A1M2VVD2_TRAPU (Uncharacterized protein n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VVD2_TRAPU)

HSP 1 Score: 51.2 bits (121), Expect = 7.380e-5
Identity = 31/91 (34.07%), Postives = 47/91 (51.65%), Query Frame = 1 
Query:   70 QALTSDDFQCNICWELLARPVTLVCGHTACESCMAKYLRTQAQAQARIGNLRANRIS-------CPAGCQRMIPLVLPQVTTMVQKLLTRG 321
            Q L++DD  C +C+  ++ P+TL+CGHT C SC+  YL + A A    G   A  ++         + C+R IPL        ++ LLT G
Sbjct:  549 QRLSTDDTPCPVCFCDVSEPLTLLCGHTYCRSCLQHYLGSLANATGGAGPTSATCLAEVERDDGTTSPCRRGIPL------ETIRDLLTPG 633
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BLAST of mRNA_H-paniculata_contig18350.4494.1 vs. uniprot
Match: UPI001EAF9031 (uncharacterized protein LOC124126248 n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAF9031)

HSP 1 Score: 51.2 bits (121), Expect = 7.480e-5
Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:   70 QALTSDDFQCNICWELLARPVTLVCGHTACESCMAKYLRTQAQAQARIGNLRANRISCPAGCQRMIPLVLP 282
            ++L  +   C+IC E    P TL CGHT C+ C+ K+L+T+  A      +RA  I CP  C++M  +  P
Sbjct:  242 ESLNENFLTCSICTEGYKDPCTLTCGHTLCQGCLGKFLKTRQDA------IRAKSIPCPY-CRQMTRVPQP 305
[Close]
BLAST of mRNA_H-paniculata_contig18350.4494.1 vs. uniprot
Match: UPI001457E81D (bifunctional apoptosis regulator-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001457E81D)

HSP 1 Score: 50.8 bits (120), Expect = 9.270e-5
Identity = 31/102 (30.39%), Postives = 46/102 (45.10%), Query Frame = 1 
Query:   67 PQALTSD--DFQCNICWELLARPVTLVCGHTACESCMAKYLRTQAQAQARIGNLRANRISCPAGCQRMIPLVLPQVTTMVQKLLTRGFPKLYRQRLEEAESD 366
            P   T D  + +C  C+ELL  P TLVCGHT C  C+AK+  T            + R  CP           P+V  M++ +L   F +    R +E +++
Sbjct:   16 PMMSTEDHGEAECGCCFELLVEPTTLVCGHTFCRHCLAKWTVT------------SGRRLCPTCKSEWRGS--PKVNIMIRNMLENAFSQKLAARTQEVDTE 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18350.4494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G4J4_ECTSI9.310e-5479.66RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JAA6_9PHAE9.760e-5477.05RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CBF7_9STRA3.900e-1037.89RING-type domain-containing protein n=1 Tax=Tribon... [more]
UPI00145864215.680e-630.11bifunctional apoptosis regulator-like isoform X1 n... [more]
A0A7S3XSY9_HETAK4.010e-530.34Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A210QXR6_MIZYE4.960e-527.96Bifunctional apoptosis regulator n=2 Tax=Mizuhopec... [more]
UPI001EAFB0195.370e-533.33uncharacterized protein LOC124127995 n=1 Tax=Halio... [more]
A0A1M2VVD2_TRAPU7.380e-534.07Uncharacterized protein n=1 Tax=Trametes pubescens... [more]
UPI001EAF90317.480e-536.62uncharacterized protein LOC124126248 n=1 Tax=Halio... [more]
UPI001457E81D9.270e-530.39bifunctional apoptosis regulator-like n=1 Tax=Pect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18350contigH-paniculata_contig18350:852..3008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size387
Cds size387
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18350.4494.1prot_H-paniculata_contig18350.4494.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18350 852..3008 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929424.1542904-CDS-H-paniculata_contig18350:851..9881622929424.1542904-CDS-H-paniculata_contig18350:851..988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18350 852..988 -
1691480855.2197402-CDS-H-paniculata_contig18350:851..9881691480855.2197402-CDS-H-paniculata_contig18350:851..988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18350 852..988 -
1622929424.1651106-CDS-H-paniculata_contig18350:1666..17911622929424.1651106-CDS-H-paniculata_contig18350:1666..1791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18350 1667..1791 -
1691480855.2322853-CDS-H-paniculata_contig18350:1666..17911691480855.2322853-CDS-H-paniculata_contig18350:1666..1791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18350 1667..1791 -
1622929424.1780856-CDS-H-paniculata_contig18350:2883..30081622929424.1780856-CDS-H-paniculata_contig18350:2883..3008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18350 2884..3008 -
1691480855.242751-CDS-H-paniculata_contig18350:2883..30081691480855.242751-CDS-H-paniculata_contig18350:2883..3008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18350 2884..3008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18350.4494.1

>prot_H-paniculata_contig18350.4494.1 ID=prot_H-paniculata_contig18350.4494.1|Name=mRNA_H-paniculata_contig18350.4494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
MEVSGEDEAGDVSGDAGAVCVSPQALTSDDFQCNICWELLARPVTLVCGH
TACESCMAKYLRTQAQAQARIGNLRANRISCPAGCQRMIPLVLPQVTTMV
QKLLTRGFPKLYRQRLEEAESDNALVTQV
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mRNA from alignment at H-paniculata_contig18350:852..3008-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18350.4494.1 ID=mRNA_H-paniculata_contig18350.4494.1|Name=mRNA_H-paniculata_contig18350.4494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2157bp|location=Sequence derived from alignment at H-paniculata_contig18350:852..3008- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGTTTCAGGAGAGGATGAAGCCGGTGATGTTTCCGGGGACGCCGG
GGCTGTGTGCGTGTCCCCCCAAGCTCTTACGAGCGACGACTTCCAGTGTA
ATATTTGCTGGGAGCTATTGGCGAGGTGAATCATGTTGCTGTCCGCGCTT
CCGCTGTCGGTTCTCCGCGTCCTCCTTGACAATAGTAACACCGCGTAGGA
ACGAAGTGACTGAAGAAATCAAAAATGAGGAATTCTAAATTTCCTTTGGC
CGTCTGTAGAGAGTTTTCGCACAATGCCGTCCTTTTGCAAACTTCGGATT
GGTCGTGTGTTATTGCCAACAGTGAGCTCGCTCCTCGGCCGGGACCCCAG
TCCACCTACATTAACTTGTCGTTGCAAAACGTTTTTTTTTTTTTTTTGTC
ACAATAATCAGCGACTGTTCGTATCTCTCTCATTGAATGTTCTTTTTAAA
AATTTATTTATGGGGATTTCCTTTCCTAACGAGACGTTGGTGTGGGTGAA
GTGGTATCAGGAAGGGATCAGCGACGAGCAGCTCACTGTTTGTTAGCTAT
GTACAATTAAACCGAAATTTGGGAAAGGAAGTCGCTTTGCGCAAGCATTT
TTGTGGTTCGTCAGAGTATTCATGACCATCGTGGACACAGTTGAGGGTAG
TCATATGCGCACGGGTCAAACACATGGGTCGCAGATTTTACGGGAGCTGT
TGGCGAGGTGGGTCGCTCGTGCTGGGCATGTCGTTGCCGGTTGTATGATT
AAGTTGCAGTACGAGCGTTACTGTTATATTATACATGTAATATCCATGGT
CGAAGAGGTGCGAGAATTCCCGGTATTCGGGAGGTCAAGATACGCATGTC
ATTTATCGGTATCCTGTCGATCTATCAAGCAGATACCCAAAGATCCATCG
AGTCCATTTGCAAGTCGGTTCACCTGATGGGCATGCGTGGCTTGTAGATG
AGATGTCCCCATCATAGTGGAGATCTAAGCATGTGTTCATGCATAGCTCA
TTCAGCGAAATGTACTCCAAGTTCTCACGATGAGGATACCTAAGCGTCAG
GTTGCGAGCGAGCACTCCAAAACACCGAGTAGACTACGCATATGGTGAGT
TATATGGTGAAGGTGTTTTACTCTCTACTTGCTACCCGATGTGCTATACC
CCCCCCCCCCCCGAATTGATATATACCCCCTCCCCCCTCTTCCCCCTCGG
GAAATCTTGCTCTTCAGGCCGGTGACATTGGTGTGTGGACACACCGCGTG
TGAGTCGTGCATGGCCAAATATCTTCGGACCCAAGCGCAAGCTCAGGCTC
GGATAGGAAACCTCCGCGCCAACCGTATATCCTGCCCCGCCGGTGCGGTA
TTGTCGTGCAACGGTCGGGGTTCCGCAGTTAGTTTAACTAGAGCTCTCAT
TTAATCATTTTATTGTACCCATGATAAGGTTGTACAGCTGACTTTGAACT
TCAGTTGTATGTACTTATCGGCAAAATCGATTATAAGGGGGGTACTACGG
AGTAAAAGATGAGTTTGAACATACAAGAGTAATTGTGTAATGTAGAAAAC
ATGATAATGGCCGTGAAGAAAAAAAATGGAAGTGTGCTCGGTATTCTTCA
GGTTCTGGATTACATTTTCTTTGTGAAATGAACAAACCCGAGGGGAGGAG
CGGGGGGAGGGGGGAGGTTGAGGTTATGCAGACGAGTTTAATCTGCAATT
GTATACAATTATTAGCAAATTTTAATCAACAGGGGGGTGGGTTACTCGTG
TTTTGCATACCGTATTTATTTGACCATTCACCACGCGTCCTCTGGAGGAC
GGGGCCTCGTGCCTATCAGAGCGATTTTCTGTGGCTATCAATCCCTCTTT
CCTATGTTGCCAAATTTGACTCAAGAAGGTTTCACCTACCTCAACCCTCG
CCTTTTGCGGCCAATTTATATCTCCTCGCACCGCGATCACCTTCTTGTCG
CAATCCCAGGAGTCAAAGACCTACCTCGCTATTTCACGCATCCCTTTCCT
CCCTTTGCCTCTTCTGCCAGGATGTCAGCGGATGATACCACTGGTGCTCC
CGCAGGTGACAACTATGGTGCAAAAGTTGCTCACGAGGGGTTTTCCCAAG
TTGTACCGCCAACGGCTTGAGGAAGCAGAGTCGGACAACGCGCTTGTTAC
TCAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig18350:852..3008-

>mRNA_H-paniculata_contig18350.4494.1 ID=mRNA_H-paniculata_contig18350.4494.1|Name=mRNA_H-paniculata_contig18350.4494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig18350:852..3008- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGTTTCAGGAGAGGATGAAGCCGGTGATGTTTCCGGGGACGCCGG
GGCTGTGTGCGTGTCCCCCCAAGCTCTTACGAGCGACGACTTCCAGTGTA
ATATTTGCTGGGAGCTATTGGCGAGATGGAGGTTTCAGGAGAGGATGAAG
CCGGTGATGTTTCCGGGGACGCCGGGGCTGTGTGCGTGTCCCCCCAAGCT
CTTACGAGCGACGACTTCCAGTGTAATATTTGCTGGGAGCTATTGGCGAG
GCCGGTGACATTGGTGTGTGGACACACCGCGTGTGAGTCGTGCATGGCCA
AATATCTTCGGACCCAAGCGCAAGCTCAGGCTCGGATAGGAAACCTCCGC
GCCAACCGTATATCCTGCCCCGCCGGCCGGTGACATTGGTGTGTGGACAC
ACCGCGTGTGAGTCGTGCATGGCCAAATATCTTCGGACCCAAGCGCAAGC
TCAGGCTCGGATAGGAAACCTCCGCGCCAACCGTATATCCTGCCCCGCCG
GATGTCAGCGGATGATACCACTGGTGCTCCCGCAGGTGACAACTATGGTG
CAAAAGTTGCTCACGAGGGGTTTTCCCAAGTTGTACCGCCAACGGCTTGA
GGAAGCAGAGTCGGACAACGCGCTTGTTACTCAGGTAGATGTCAGCGGAT
GATACCACTGGTGCTCCCGCAGGTGACAACTATGGTGCAAAAGTTGCTCA
CGAGGGGTTTTCCCAAGTTGTACCGCCAACGGCTTGAGGAAGCAGAGTCG
GACAACGCGCTTGTTACTCAGGTA
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