mRNA_H-paniculata_contig18341.4491.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18341.4491.1
Unique NamemRNA_H-paniculata_contig18341.4491.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18341.4491.1 vs. uniprot
Match: A0A1R0GP03_9FUNG (RNA-directed DNA polymerase from mobile element jockey n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0GP03_9FUNG)

HSP 1 Score: 73.2 bits (178), Expect = 2.270e-12
Identity = 33/94 (35.11%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:    7 KGLSTLMRVRLGGFWTLRRFAVCDLVPEKYKTYCPFCKEEIGETTEHLLLECSRWAEGRKVWLGDLIAEANSFVRRNQNSHARVKSVALLLGGE 288
            KG+  ++++R G F T  + A   ++  KY   CPFCK  + E+ EHL+LECS+W + R+  LG+ +   N  +  +     R+  +  LLGGE
Sbjct:  868 KGIQEIIKIRTGLFRTAMKLAKSKIIDRKYLQLCPFCKNNVPESVEHLILECSKWTQQRQEHLGEFLPTINHHLPGS----TRIWLLGRLLGGE 957
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BLAST of mRNA_H-paniculata_contig18341.4491.1 vs. uniprot
Match: A0A1R0GQK8_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0GQK8_9FUNG)

HSP 1 Score: 59.3 bits (142), Expect = 3.130e-8
Identity = 24/58 (41.38%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   10 GLSTLMRVRLGGFWTLRRFAVCDLVPEKYKTYCPFCKEEIGETTEHLLLECSRWAEGR 183
            GL  + ++R+G F T++R +    + EK++  CPFCK ++ ET +H+LL CSRW   R
Sbjct:  114 GLQDIGKMRMGTFRTVQRLSNMKFLDEKFEKNCPFCKIDVPETVDHILLNCSRWDRQR 171
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BLAST of mRNA_H-paniculata_contig18341.4491.1 vs. uniprot
Match: A0A2R5FKX6_9STRA (Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FKX6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 8.010e-8
Identity = 30/74 (40.54%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:    7 KGLSTLMRVRLGGFWTLRRFAVCDLVPEKYKTYCPFCKEEIGETTEHLLLECSRWAEGRKVWLGDLIAEANSFV 228
            +G+ST++R+R+G F T  R A   L   +YK  CP C  +  ET  H+ L C RWA  R   L  LI E+ + V
Sbjct:  565 RGVSTMVRMRIGAFNTTERLARWGLRAARYKHECPCCHSQEPETIGHIFLRCPRWASKRDELLTGLIEESRAAV 638
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BLAST of mRNA_H-paniculata_contig18341.4491.1 vs. uniprot
Match: A0A2T9Y9S3_9FUNG (Uncharacterized protein n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9Y9S3_9FUNG)

HSP 1 Score: 57.4 bits (137), Expect = 1.020e-7
Identity = 21/53 (39.62%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:   13 LSTLMRVRLGGFWTLRRFAVCDLVPEKYKTYCPFCKEEIGETTEHLLLECSRW 171
            ++ + ++R+G +WT RR+A    + +++   CPFC+    ET EH+LLECS W
Sbjct:   43 INYVFKIRIGTYWTERRYAKSGFIEKRFIEECPFCRNIAPETIEHMLLECSLW 95
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BLAST of mRNA_H-paniculata_contig18341.4491.1 vs. uniprot
Match: A0A0F9ZBM3_9MICR (Endonuclease-reverse transcriptase n=2 Tax=Nosema ceranae TaxID=40302 RepID=A0A0F9ZBM3_9MICR)

HSP 1 Score: 59.7 bits (143), Expect = 1.140e-7
Identity = 32/102 (31.37%), Postives = 53/102 (51.96%), Query Frame = 1 
Query:    7 KGLSTLMRVRLGGFWTLRRFAVCDLVPEKYKTYCPFCKEEIGETTEHLLLECSRWAEGRKVWLGDLIAEANSFVRRNQNSHARVKSVAL--LLGGESDGNRL 306
            +G   + R+R G F  +R      ++  +++++CPFCK+ + ET EHL   C RW E R  +       A+ +V+ + NS + V    L  LLG E+  + L
Sbjct:  792 RGCLGIGRMRSGTFNFVRNLVNKRVLDNRFRSFCPFCKDSVVETIEHLFFFCQRWDEYRDHYFKWWSTGASQYVKNSNNSMSVVLQALLRILLGEEAGSDVL 893
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BLAST of mRNA_H-paniculata_contig18341.4491.1 vs. uniprot
Match: A0A2T9YVZ1_9FUNG (Uncharacterized protein n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9YVZ1_9FUNG)

HSP 1 Score: 53.9 bits (128), Expect = 2.900e-6
Identity = 20/44 (45.45%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:   46 FWTLRRFAVCDLVPEKYKTYCPFCKEEIGETTEHLLLECSRWAE 177
            +W  RR+A    + +++   CPFC+    ET EH+LLECSRWA+
Sbjct:  104 YWIARRYAKSGFIEKRFIEECPFCRNIAPETIEHMLLECSRWAQ 147
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BLAST of mRNA_H-paniculata_contig18341.4491.1 vs. uniprot
Match: A0A1R0H3B4_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0H3B4_9FUNG)

HSP 1 Score: 49.3 bits (116), Expect = 2.250e-5
Identity = 20/46 (43.48%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:   31 VRLGGFWTLRRFAVCDLVPEKYKTYCPFCKEEIGETTEHLLLECSR 168
            +R+G F T++R +    + EK+K  CPFCK ++ E  +H+LL CSR
Sbjct:    1 MRMGTFRTVQRLSNMKFLDEKFKKNCPFCKIDVPEIFDHILLNCSR 46
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18341.4491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A1R0GP03_9FUNG2.270e-1235.11RNA-directed DNA polymerase from mobile element jo... [more]
A0A1R0GQK8_9FUNG3.130e-841.38Uncharacterized protein (Fragment) n=1 Tax=Smittiu... [more]
A0A2R5FKX6_9STRA8.010e-840.54Retrovirus-related Pol polyprotein from type-1 ret... [more]
A0A2T9Y9S3_9FUNG1.020e-739.62Uncharacterized protein n=1 Tax=Smittium simulii T... [more]
A0A0F9ZBM3_9MICR1.140e-731.37Endonuclease-reverse transcriptase n=2 Tax=Nosema ... [more]
A0A2T9YVZ1_9FUNG2.900e-645.45Uncharacterized protein n=1 Tax=Smittium simulii T... [more]
A0A1R0H3B4_9FUNG2.250e-543.48Uncharacterized protein (Fragment) n=1 Tax=Smittiu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18341contigH-paniculata_contig18341:3563..3979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size417
Cds size417
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929423.8566-CDS-H-paniculata_contig18341:3562..39791622929423.8566-CDS-H-paniculata_contig18341:3562..3979Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18341 3563..3979 +
1691480855.0857344-CDS-H-paniculata_contig18341:3562..39791691480855.0857344-CDS-H-paniculata_contig18341:3562..3979Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18341 3563..3979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18341.4491.1prot_H-paniculata_contig18341.4491.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18341 3563..3979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18341.4491.1

>prot_H-paniculata_contig18341.4491.1 ID=prot_H-paniculata_contig18341.4491.1|Name=mRNA_H-paniculata_contig18341.4491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
MGKGLSTLMRVRLGGFWTLRRFAVCDLVPEKYKTYCPFCKEEIGETTEHL
LLECSRWAEGRKVWLGDLIAEANSFVRRNQNSHARVKSVALLLGGESDGN
RLFDWTWSSEYEASALPSREADTPSPVDDDEVHQVGQLD
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mRNA from alignment at H-paniculata_contig18341:3563..3979+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18341.4491.1 ID=mRNA_H-paniculata_contig18341.4491.1|Name=mRNA_H-paniculata_contig18341.4491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=417bp|location=Sequence derived from alignment at H-paniculata_contig18341:3563..3979+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAAAGGGATTAAGTACATTAATGAGGGTTCGGCTCGGAGGATTTTG
GACGTTACGCAGATTTGCGGTGTGTGACCTTGTACCTGAAAAATACAAGA
CTTACTGCCCATTTTGCAAGGAGGAAATCGGAGAAACCACTGAACATCTA
CTACTTGAATGTAGTAGGTGGGCAGAGGGTCGCAAAGTTTGGTTGGGTGA
TCTAATCGCGGAGGCTAACTCATTTGTGAGACGCAATCAGAACAGTCATG
CTAGAGTCAAGAGTGTTGCCTTACTCCTCGGAGGTGAAAGTGACGGAAAT
AGGTTGTTTGACTGGACTTGGTCGTCGGAATATGAGGCGTCAGCTCTGCC
ATCCAGAGAGGCTGATACACCTAGTCCGGTTGACGATGACGAAGTTCATC
AGGTTGGGCAACTGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig18341:3563..3979+

>mRNA_H-paniculata_contig18341.4491.1 ID=mRNA_H-paniculata_contig18341.4491.1|Name=mRNA_H-paniculata_contig18341.4491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig18341:3563..3979+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAAAGGGATTAAGTACATTAATGAGGGTTCGGCTCGGAGGATTTTG
GACGTTACGCAGATTTGCGGTGTGTGACCTTGTACCTGAAAAATACAAGA
CTTACTGCCCATTTTGCAAGGAGGAAATCGGAGAAACCACTGAACATCTA
CTACTTGAATGTAGTAGGTGGGCAGAGGGTCGCAAAGTTTGGTTGGGTGA
TCTAATCGCGGAGGCTAACTCATTTGTGAGACGCAATCAGAACAGTCATG
CTAGAGTCAAGAGTGTTGCCTTACTCCTCGGAGGTGAAAGTGACGGAAAT
AGGTTGTTTGACTGGACTTGGTCGTCGGAATATGAGGCGTCAGCTCTGCC
ATCCAGAGAGGCTGATACACCTAGTCCGGTTGACGATGACGAAGTTCATC
AGGTTGGGCAACTGGATATGGGAAAGGGATTAAGTACATTAATGAGGGTT
CGGCTCGGAGGATTTTGGACGTTACGCAGATTTGCGGTGTGTGACCTTGT
ACCTGAAAAATACAAGACTTACTGCCCATTTTGCAAGGAGGAAATCGGAG
AAACCACTGAACATCTACTACTTGAATGTAGTAGGTGGGCAGAGGGTCGC
AAAGTTTGGTTGGGTGATCTAATCGCGGAGGCTAACTCATTTGTGAGACG
CAATCAGAACAGTCATGCTAGAGTCAAGAGTGTTGCCTTACTCCTCGGAG
GTGAAAGTGACGGAAATAGGTTGTTTGACTGGACTTGGTCGTCGGAATAT
GAGGCGTCAGCTCTGCCATCCAGAGAGGCTGATACACCTAGTCCGGTTGA
CGATGACGAAGTTCATCAGGTTGGGCAACTGGAT
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