mRNA_H-paniculata_contig1834.4490.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1834.4490.1
Unique NamemRNA_H-paniculata_contig1834.4490.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1834.4490.1 vs. uniprot
Match: D8LPR5_ECTSI (Pex2_Pex12 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPR5_ECTSI)

HSP 1 Score: 257 bits (657), Expect = 3.440e-77
Identity = 155/219 (70.78%), Postives = 170/219 (77.63%), Query Frame = 2 
Query:    2 QVYPVLRASYEGSFLLYQWLYLFRRSVFFSPALRLTGMVVRRTTYEDYQEDVQAXXXXXXXXXXXXXXXXXXXXXATAA----------GMGDGKGFSGKVGKYGRLLLVAAVVGFKIVEWWTRVEAQEGSSWRRSRLPQSLPPPQPPTPAAGGCGVPADCGVCPSCGGARVNPTLCAASGFVFCYRCLSRHVREHGECPVTGLACGAAGVVRLYDDDE 628
            QVYP+LRASYEGS L+YQWLYLFRRS FFSPALRLTGMVVRR T ED+QED +AXXXXXXXXXXXXXXXXXXXXX               +GD      +V +YGR+LL+ AVV FKIVEWW RVE+QEGSSWRRS+LP        P  A GGCGVP+D G CP+CGGARVNP LCAASGFVFCY CLS HVREHGECPVTGLAC   G+VRL+DDDE
Sbjct:  274 QVYPLLRASYEGSCLVYQWLYLFRRSAFFSPALRLTGMVVRRATIEDWQEDAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLGD------RVARYGRVLLITAVVAFKIVEWWNRVESQEGSSWRRSQLPSPXXXXXXPLAAPGGCGVPSDSGACPACGGARVNPALCAASGFVFCYGCLSAHVREHGECPVTGLACQEEGIVRLFDDDE 486
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BLAST of mRNA_H-paniculata_contig1834.4490.1 vs. uniprot
Match: A0A5D6Y815_9STRA (Peroxin-12 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y815_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.730e-23
Identity = 76/217 (35.02%), Postives = 104/217 (47.93%), Query Frame = 2 
Query:    2 QVYPVLRASYEGSFLLYQWLYLFRRSVFFSPALRLTGMVVRRTTYEDY------QEDVQAXXXXXXXXXXXXXXXXXXXXXATAAGMGDGKGFSGKVGKYGRLLLVAAVVGFKIVEWWTRVEAQEGSSWRRSRLPQSLPPPQPPTPAA-GGCGVP---ADCGVCPSCGGARVNPTLCAASGFVFCYRCLSRHVREHGECPVTGLACGAAGVVRLYDD 622
            Q YP    +YEGSF LYQWLYLF  + +FSP LR   +V+ R T  D       Q D +                      A+ A +            +  +LL+  V G+K +EW   + ++EG + +        P P PP P    G  +    AD   CP CG ARVNP + A SG+VFCY C+ R+V +HGECPVT + C    + ++YDD
Sbjct: 1183 QAYPFAHFAYEGSFFLYQWLYLFGDTPYFSPLLRRMKIVLVRVTAADESMLRQSQSDYRDQMLAKLSGSSVAMRARRFLLRASWATV-----------DHSYVLLLLGVAGYKFIEW---MYSEEGVAVKMRMTGADSPIPPPPLPPQFSGSALTLSSADPAACPVCGKARVNPAM-AVSGYVFCYTCIYRYVEQHGECPVTQMTCDLPSIAKIYDD 1384
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BLAST of mRNA_H-paniculata_contig1834.4490.1 vs. uniprot
Match: UPI0006452102 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006452102)

HSP 1 Score: 107 bits (267), Expect = 6.010e-22
Identity = 67/206 (32.52%), Postives = 99/206 (48.06%), Query Frame = 2 
Query:    2 QVYPVLRASYEGSFLLYQWLYLFRRSVFFSPALRLTGMVVRRTTYEDYQEDVQAXXXXXXXXXXXXXXXXXXXXXATAAGMGDGKGFSGKVGKYGRLLLVAAVVGFKIVEWWTRVEAQEGSSWRRSRLPQSLPPPQPPTPAAGGCGVPADCGVCPSCGGARVNPTLCAASGFVFCYRCLSRHVREHGECPVTGLACGAAGVVRLYD 619
            +VYPV+ A+YE SF +YQ LYL+  + F++P L    +V++R T++D +    A                                    +  Y + +L A+V  FK +EWW     Q   S     LP   PPP  P  A  G  +PAD  +CP C   R NPT+C  SGFVFCY C+   V++HG+CP+T +      + ++Y+
Sbjct:  210 KVYPVISATYEASFFIYQLLYLYEYTDFYTPFLHFQRIVLKRLTHQDIENHANAVSARRNERIAYVRNWPYVFTPVVKV--------LDSILDYSKFILPASVFLFKSLEWWYSENRQSTPS-----LPVP-PPPSIPKRAPDGLAIPADKSLCPLCLKERTNPTICG-SGFVFCYPCIFGFVQQHGKCPITFIPSSTESLRKIYE 400
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BLAST of mRNA_H-paniculata_contig1834.4490.1 vs. uniprot
Match: A0A2P4YEL5_9STRA (Peroxisome assembly protein 12 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YEL5_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.710e-21
Identity = 73/216 (33.80%), Postives = 104/216 (48.15%), Query Frame = 2 
Query:    2 QVYPVLRASYEGSFLLYQWLYLFRRSVFFSPALRLTGMVVRRTTYED-----YQEDVQAXXXXXXXXXXXXXXXXXXXXXATAAGMGDGKGFSGKVGKYGRLLLVAAVVGFKIVEWWTRVEAQEGSSWRRSRLPQSLPPPQPPTPA--AGGCGVPA--DCGVCPSCGGARVNPTLCAASGFVFCYRCLSRHVREHGECPVTGLACGAAGVVRLYDD 622
            + YP +  +YEGSF LYQWLYLF  + +FSP LR    V+ R T +D       E +                        T     D          +  +LL+  + G+K VEW   + ++EG++ +        P P PP P   +G     A  D  +CP C   RVNP + A SG+VFCY C+ RH+ +HGECP+T + C  A +V++YDD
Sbjct:  181 KTYPFVHFAYEGSFFLYQWLYLFGDTPYFSPFLRRMKTVLVRMTADDESIFRQNETMYREKLMEKLSGQGLFDRVRRLALRTTWATLD----------HSYVLLLLGIAGYKFVEW---MYSEEGTAAKLRLTGTDAPIPPPPLPPQFSGQALTLATMDPTLCPLCKKKRVNPAM-APSGYVFCYPCIYRHIEKHGECPITQMKCELASIVKIYDD 382
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BLAST of mRNA_H-paniculata_contig1834.4490.1 vs. uniprot
Match: A0A225VIS4_9STRA (Peroxisome assembly protein 12 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VIS4_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.220e-21
Identity = 71/215 (33.02%), Postives = 105/215 (48.84%), Query Frame = 2 
Query:    8 YPVLRASYEGSFLLYQWLYLFRRSVFFSPALRLTGMVVRRTTYED---YQEDVQAXXXXXXXXXXXXXXXXXXXXXA---TAAGMGDGKGFSGKVGKYGRLLLVAAVVGFKIVEWWTRVEAQEGSSWRRSRLPQSLPPPQPPTPAAGGCGVPA----DCGVCPSCGGARVNPTLCAASGFVFCYRCLSRHVREHGECPVTGLACGAAGVVRLYDD 622
            YP +  +YEGSF LYQWLYLF  + +FSP L+    V+ R T +D   ++++  A                     A   T A +            +  +LL+  + G+K VEW   + ++EG++ +        P P PP P        A    D  +CP C   R+NP + A SG+VFCY C+ RH+ EHGECP+T + C    +V++YDD
Sbjct:  179 YPFVHFAYEGSFFLYQWLYLFGDTPYFSPVLKAMKTVLVRVTADDESVFRQNEAAYREQLMEKLNGQGIFDRIRRLALRTTWASL-----------DHSYVLLLLGIAGYKFVEW---MYSEEGAAAKLRFTGTDAPVPPPPLPPQFSGQALALATMDPKLCPLCKKRRMNPAM-APSGYVFCYPCIYRHIDEHGECPITQMKCELTSIVKIYDD 378
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BLAST of mRNA_H-paniculata_contig1834.4490.1 vs. uniprot
Match: A0A329SMP3_9STRA (Peroxisome assembly protein 12 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SMP3_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.450e-21
Identity = 74/212 (34.91%), Postives = 103/212 (48.58%), Query Frame = 2 
Query:    8 YPVLRASYEGSFLLYQWLYLFRRSVFFSPALRLTGMVVRRTTYED---YQEDVQAXXXXXXXXXXXXXXXXXXXXXATAAGMGDGKGFSGKVGKYGRLLLVAAVVGFKIVEWWTRVEAQEG--SSWRRSRLPQSLPPPQPPTPAAGGCGVPA--DCGVCPSCGGARVNPTLCAASGFVFCYRCLSRHVREHGECPVTGLACGAAGVVRLYDD 622
            YP     YEGSF LYQWLYLF  + +FSP LR    V+ R T +D   +Q++                        A  A        +     +  +LL+  V G+K VEW   + ++EG  +  R +     +PPP  P   +G     A  D  +CP C   RVNP + A SG+VFCY C+  HV +HGECP+T + C  A +V++YDD
Sbjct:  187 YPFAHFGYEGSFFLYQWLYLFGDTPYFSPFLRFMKTVLVRVTPDDESVFQQNEATYREKVLEKLAGPGLFDRVRRLALRA--------TWATLDHSYVLLLLGVAGYKFVEW---MYSEEGVAAKLRLTGTDAPIPPPPLPPQFSGQALTLATMDPTLCPLCKKKRVNPAM-APSGYVFCYPCIYHHVEKHGECPITQIKCEPATIVKIYDD 386
[Close]
BLAST of mRNA_H-paniculata_contig1834.4490.1 vs. uniprot
Match: A0A662X891_9STRA (Peroxin-12 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X891_9STRA)

HSP 1 Score: 104 bits (260), Expect = 5.380e-21
Identity = 69/212 (32.55%), Postives = 103/212 (48.58%), Query Frame = 2 
Query:    8 YPVLRASYEGSFLLYQWLYLFRRSVFFSPALRLTGMVVRRTTYED---YQEDVQAXXXXXXXXXXXXXXXXXXXXXATAAGMGDGKGFSGKVGKYGRLLLVAAVVGFKIVEWWTRVEAQEGSSWRRSRLPQSLPPPQPPTPAAGGCGVPA----DCGVCPSCGGARVNPTLCAASGFVFCYRCLSRHVREHGECPVTGLACGAAGVVRLYDD 622
            YP    +YEGSF +YQWLYLF  + +FSP LR    ++ R T +D   ++++                        A  A        +     +  +LL+  + G+K VEW   + ++EG++ +        P P PP P        A    +  +CP C   RVNP + A SG+VFCY CL R++ +HGECPVT + C  A V+++YDD
Sbjct:  202 YPFAHLAYEGSFFVYQWLYLFGDTPYFSPFLRRMKTILVRVTPDDESVFRQNESTYRQKLMEKLGGPGLLDRLRRLALKA--------TWATLDHSYVLLLLGIAGYKFVEW---MYSEEGTAVKMRLTGSDAPVPPPPLPPQFSGHALALATMNPALCPLCKQQRVNPAM-APSGYVFCYPCLYRYIEQHGECPVTQMKCEPASVIKIYDD 401
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BLAST of mRNA_H-paniculata_contig1834.4490.1 vs. uniprot
Match: A0A8K1FCI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCI4_PYTOL)

HSP 1 Score: 103 bits (256), Expect = 1.870e-20
Identity = 70/210 (33.33%), Postives = 98/210 (46.67%), Query Frame = 2 
Query:    8 YPVLRASYEGSFLLYQWLYLFRRSVFFSPALRLTGMVVRRTTYEDYQEDVQAXXXXXXXXXXXXXXXXXXXXXATAAGMGDGKGFSGKVGKYGRLLLVAAVVGFKIVEWWTRVEAQEGSSWRRSRLPQSLPPPQPPTPA--AGGCGV---PADCGVCPSCGGARVNPTLCAASGFVFCYRCLSRHVREHGECPVTGLACGAAGVVRLYDD 622
            YP +  +YE SF LYQWLYLF  + +FSP LR  G+++ R T  D  E   A                         G+      +  V  +  +LLV  +  +K +EW   + +++G + +        P P PP P    G   +     D   CP C   RVNP   A SG VFCY C+ RHV  HGECPVT + C  + ++++YDD
Sbjct:  204 YPFVHLAYEASFFLYQWLYLFGDTPYFSPFLRRMGVILVRVTAND--ESAFAQKQSEHRDKLLSSLSGSGVLQRVQRGL---LRSAWAVYDHSHVLLVLGIAAYKFLEW---MYSEDGVATKIRLTGTDAPIPPPPLPPNYVGNASILMSTIDDNKCPLCQRRRVNPAA-AISGVVFCYPCIYRHVEAHGECPVTQMKCDVSSIIKIYDD 404
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BLAST of mRNA_H-paniculata_contig1834.4490.1 vs. uniprot
Match: A0A151Z7L7_9MYCE (Peroxin-12 n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z7L7_9MYCE)

HSP 1 Score: 102 bits (254), Expect = 3.780e-20
Identity = 65/209 (31.10%), Postives = 98/209 (46.89%), Query Frame = 2 
Query:    2 QVYPVLRASYEGSFLLYQWLYLFRRSVFFSPALRLTGMVVRRTTYEDYQEDVQAXXXXXXXXXXXXXXXXXXXXXATAAGMGDGKGFSGKVGKYGRLLLVAAVVGFKIVEWWTRVEAQEGSSWRRSRLPQSLPPPQPPTPAAGGCGVPADCGVCPSCGGARVNPTLCAASGFVFCYRCLSRHVREHGECPVTGLACGAAGVVRLYDDDE 628
            QVYP L   YE  F LYQ LYL+  + F++P L    + ++R T++D     Q                           + D       +  Y + +L A+V  FK +EWW     Q   +     LP  +PPP PP  A  G  +P D  +CP C   R N T+C  SGFV+CYRC+ ++V ++  CP+T L     G+ ++Y+ ++
Sbjct:  221 QVYPFLSGFYESLFFLYQLLYLYEYTNFYTPFLHTQKINLKRLTHQDTDNHNQLIANRRNDRINMVRNWPMPYLFIPLVKVLD------SILDYSKFILPASVFLFKSLEWWYSENRQSAPT-----LPV-IPPPLPPKQAKDGMDIPDDKSLCPICREKRTNATICG-SGFVYCYRCIHQYVSQYSRCPITFLPANIEGLRKIYESEQ 416
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BLAST of mRNA_H-paniculata_contig1834.4490.1 vs. uniprot
Match: A0A6A3T0D5_9STRA (Peroxin-12 n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3T0D5_9STRA)

HSP 1 Score: 102 bits (253), Expect = 5.990e-20
Identity = 73/215 (33.95%), Postives = 103/215 (47.91%), Query Frame = 2 
Query:    8 YPVLRASYEGSFLLYQWLYLFRRSVFFSPALRLTGMVVRRTTYEDY------QEDVQAXXXXXXXXXXXXXXXXXXXXXATAAGMGDGKGFSGKVGKYGRLLLVAAVVGFKIVEWWTRVEAQEGSSWRRSRLPQSLPPPQPPTPA--AGGCGVPA--DCGVCPSCGGARVNPTLCAASGFVFCYRCLSRHVREHGECPVTGLACGAAGVVRLYDD 622
            YP    +YEGSF LYQ LYLF  + +FSP LR    V+ R + +D       + D +                      AT A +            +  +LL+  + G+K VEW   + ++EG + +        P P PP P   +G     A  D  +CP C   RVNP + A SG+VFCY C+ R+V +HGECP+T + C  A VV++YDD
Sbjct:  230 YPFAHFAYEGSFFLYQGLYLFGDTPYFSPFLRCMKTVLVRVSTDDESVFRQNESDYREKLMEKLGGSGLFDRARRLALRATWATL-----------DHSYVLLLLGIAGYKFVEW---MYSEEGVAAKLRLTGTDAPTPPPPLPPQFSGQALTLATMDPALCPLCKQKRVNPAM-APSGYVFCYPCIYRYVEQHGECPITQMKCDPASVVKIYDD 429
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1834.4490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPR5_ECTSI3.440e-7770.78Pex2_Pex12 domain-containing protein n=2 Tax=Ectoc... [more]
A0A5D6Y815_9STRA4.730e-2335.02Peroxin-12 n=1 Tax=Pythium brassicum TaxID=1485010... [more]
UPI00064521026.010e-2232.52hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A2P4YEL5_9STRA1.710e-2133.80Peroxisome assembly protein 12 n=1 Tax=Phytophthor... [more]
A0A225VIS4_9STRA2.220e-2133.02Peroxisome assembly protein 12 n=1 Tax=Phytophthor... [more]
A0A329SMP3_9STRA2.450e-2134.91Peroxisome assembly protein 12 n=2 Tax=Phytophthor... [more]
A0A662X891_9STRA5.380e-2132.55Peroxin-12 n=2 Tax=Nothophytophthora sp. Chile5 Ta... [more]
A0A8K1FCI4_PYTOL1.870e-2033.33Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A151Z7L7_9MYCE3.780e-2031.10Peroxin-12 n=1 Tax=Tieghemostelium lacteum TaxID=3... [more]
A0A6A3T0D5_9STRA5.990e-2033.95Peroxin-12 n=4 Tax=Phytophthora TaxID=4783 RepID=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1834contigH-paniculata_contig1834:19680..22162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.7
Seed ortholog evalue7.3e-47
Seed eggNOG ortholog2880.D8LPR5
Preferred namePEX12
KEGG koko:K03327,ko:K06653,ko:K13345
KEGG TC2.A.66.1,3.A.20.1
KEGG Pathwayko04111,ko04146,map04111,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0006082,GO:0006464,GO:0006513,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009062,GO:0009653,GO:0009790,GO:0009791,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016054,GO:0016558,GO:0016567,GO:0016740,GO:0017038,GO:0019395,GO:0019538,GO:0019752,GO:0019787,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030258,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032991,GO:0033036,GO:0033365,GO:0034440,GO:0034613,GO:0036211,GO:0042579,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044743,GO:0045184,GO:0046395,GO:0046872,GO:0046907,GO:0046914,GO:0048137,GO:0048232,GO:0048468,GO:0048515,GO:0048598,GO:0048609,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051301,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0055114,GO:0061630,GO:0061659,GO:0065002,GO:0070647,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0098588,GO:0098805,GO:0140096,GO:1901564,GO:1901575,GO:1990351,GO:1990415,GO:1990429
EggNOG free text desc.protein import into peroxisome matrix
EggNOG OGsKOG0826@1,KOG0826@2759
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-18_002190.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04121
Exons2
Model size1305
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1834.4490.1prot_H-paniculata_contig1834.4490.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1834 20327..22050 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929423.7702773-UTR-H-paniculata_contig1834:19679..203261622929423.7702773-UTR-H-paniculata_contig1834:19679..20326Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1834 19680..20326 -
1691480855.042679-UTR-H-paniculata_contig1834:19679..203261691480855.042679-UTR-H-paniculata_contig1834:19679..20326Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1834 19680..20326 -
1622929423.8129597-UTR-H-paniculata_contig1834:22050..221621622929423.8129597-UTR-H-paniculata_contig1834:22050..22162Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1834 22051..22162 -
1691480855.0775747-UTR-H-paniculata_contig1834:22050..221621691480855.0775747-UTR-H-paniculata_contig1834:22050..22162Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1834 22051..22162 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929423.7817993-CDS-H-paniculata_contig1834:20326..206291622929423.7817993-CDS-H-paniculata_contig1834:20326..20629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1834 20327..20629 -
1691480855.0609443-CDS-H-paniculata_contig1834:20326..206291691480855.0609443-CDS-H-paniculata_contig1834:20326..20629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1834 20327..20629 -
1622929423.7972136-CDS-H-paniculata_contig1834:21807..220501622929423.7972136-CDS-H-paniculata_contig1834:21807..22050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1834 21808..22050 -
1691480855.0694427-CDS-H-paniculata_contig1834:21807..220501691480855.0694427-CDS-H-paniculata_contig1834:21807..22050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1834 21808..22050 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1834.4490.1

>prot_H-paniculata_contig1834.4490.1 ID=prot_H-paniculata_contig1834.4490.1|Name=mRNA_H-paniculata_contig1834.4490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=182bp
MVVRRTTYEDYQEDVQAAAAAAAAATSASSAGGAEETTATAAGMGDGKGF
SGKVGKYGRLLLVAAVVGFKIVEWWTRVEAQEGSSWRRSRLPQSLPPPQP
PTPAAGGCGVPADCGVCPSCGGARVNPTLCAASGFVFCYRCLSRHVREHG
ECPVTGLACGAAGVVRLYDDDEGASGGGGGV*
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mRNA from alignment at H-paniculata_contig1834:19680..22162-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1834.4490.1 ID=mRNA_H-paniculata_contig1834.4490.1|Name=mRNA_H-paniculata_contig1834.4490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2483bp|location=Sequence derived from alignment at H-paniculata_contig1834:19680..22162- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAGGTGTATCCCGTCTTGCGAGCATCGTACGAGGGTTCCTTCCTGCTTT
ACCAGTGGCTCTACCTGTTCCGGCGCTCGGTCTTCTTTTCTCCCGCCCTA
CGCCTGACCGGTATGGTTGTTCGGCGCACCACGTACGAAGACTATCAAGA
AGACGTCCAAGCGGCCGCCGCGGCGGCTGCCGCAGCAACTTCGGCGTCAA
GTGCTGGGGGTGCGGAAGAGACAACGGCTACGGCGGCGGGGATGGGCGAC
GGAAAAGGATTTTCCGGGAAAGTCGGAAAATACGGACGACTACTGCTTGT
GGCGGCGGTGGTTGGGTTCAAGATAGTGGAGTGGTGGACCAGGGTTGAGG
CGCAGGTGAGAAGACGAGGATATTAGGCTATGTCTTATTGAAAGTATATA
TTTATTTTTTTCCCGCCAGACTCTCGAAAATTCGATTTCGATTGGAAAGT
TTATGATTCGTTGAGAAACTGGCCCGAACGCTGGTCGCGGCTGGTCAAAT
TTCACGATTCCAAAAAATGTGTTTTTCGGAATCTGCCGGGAAAGTCAAGA
ATATTATTCAAACTAGATTTTGGTCGTCGGTGGATATGGAAATGAAAACA
CAATACAGGAAGACACGGCGGCCAGTGCATGGCCAAGTATGTTTTTGGTC
GACCAAGCGGCCAAAGGCAGTGAAACCCGGTGAATTGAACGTGTGATAAG
GGAATGCAGCACAGTGATAATAGTCCGGGCCGTAGCTCTTGATCAGCTGA
GCTCCCTACACTGGAGTTTGGGGTAGGCTCAGTTCGAACACAAACGAGAG
AAGGCGGGGGGCGGGGGATTGCTACTACCCTCGCTTTAAGGCATGGAACG
AATTCTCACGAGCAGCCCTCTGCCGCATACATTTTCTATGTTATTTTATC
GAAGTGAGCCCTTTGGCGTGAATATTTTTGTAATAATATCCATTTCGGTG
GCTATTGACCGCGGGTCTGAGGGGTCCACATGAGACAATTTGGGCAAAGG
GGGAAATGCGTCGCGTAATGTCACATACAGTCTGCAGTTCTGTCAAAAGA
ATGAAGAAAAAAAGTCTTGTCCAACATCACGGGCGGGGGGGCATCGTTCG
GAAACCTGAGAGATACGCAGTTCCTCGGCACCGGGCCAAACGAAAAAAAT
TCGGTCAAAAGCAGCTCTTTGTGACAAAGGCAACTTTGACGTGAATTACT
GTACCTCCCTCGATACTGGGCGGAATGCCGTCAGAGTGGTTCAGGTACCA
CCGGTAAACGTTTGCATGCGAATGTTGCGATTCCTACCGTACACCGAGGT
GTTGAGCCGTTTCAATAGATGATTGAATATATTGTGCAGGGACCTAGCCC
CTCTCCAAACGCGCGTCTTCCTTCTCTTTTTTTTTTCCTTGACCGACGAC
AACGCTGACAACAACACCAACAACGAAAACGACACCAATTCCAACAACAA
TGCACCATAATGCCGCTACCACCAATGCAACAATATCAACAATACCAACA
ATAACAACAACAACAACAACAATCAAATTCCAGGAGGGTTCCTCGTGGAG
ACGTTCGAGGCTGCCGCAGTCCCTGCCGCCGCCGCAACCGCCAACCCCGG
CCGCAGGAGGCTGTGGAGTTCCAGCGGATTGCGGGGTATGTCCGTCTTGC
GGAGGTGCGCGGGTGAACCCCACCCTGTGTGCCGCATCCGGCTTCGTGTT
TTGTTATCGTTGTCTCTCGAGACACGTGAGGGAACATGGGGAATGCCCTG
TGACAGGGTTGGCATGTGGAGCGGCGGGTGTTGTGAGGTTGTACGATGAC
GATGAGGGTGCTAGCGGTGGTGGTGGTGGTGTGTGAGATTAACTATAGTT
TAGGGTGATAACTGTTCTGTTCATGTGTACAGCCTGAACAACTTACGTTG
ACTTCATGCATCACCGAATGGAGTATATGAAAGAGTAACAGGTGATTTTG
GTTTATCCTGGTAAAGGGTATACCCGACTGCTGTGGGTTTGACTTTTTAA
AATGCATGTGATGAGACGTTTGGTTACCGCAAGCATGATAAGGCGGCTTT
CAAGCGTTACTATGGTGGGAAGAAGTCAGTTGGAGTTGCTGCACTACTGG
AGCACTTTGGTGTGTGTGCAAAAGGTCTTGCAAGACTGCGTCGTGTTATT
TTGTTGATGTCTCAATAATTTTGAGGTTGGTAATTTACGAAAGTTATCTC
GAGGCGTTTTGTTGTTTTTTTGTTTTGTTTTGCAAGATCTCCCATATGTA
TCGTTTTTTATTCGTTGTCGTGAAGGCGATCCCGAGAGACATTCATGTAT
GGGGATGGTTTGACTGTCGTTTGCCTTTTTTTTTTCCTGCTCATTATGGT
TCGGTGCGCGGCGCGATGAACGACATTTTTTTTTTTATTCGTTTGAAAGG
AGAGACAGTTCTTTCGGGGAATGTCAGCGTTCTTTCTGCTTTTTTCGTCC
AGCTTCTCATTTCAAACTGTGATATTGCGGCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig1834:19680..22162-

>mRNA_H-paniculata_contig1834.4490.1 ID=mRNA_H-paniculata_contig1834.4490.1|Name=mRNA_H-paniculata_contig1834.4490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1092bp|location=Sequence derived from alignment at H-paniculata_contig1834:19680..22162- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGTTCGGCGCACCACGTACGAAGACTATCAAGAAGACGTCCAAGC
GGCCGCCGCGGCGGCTGCCGCAGCAACTTCGGCGTCAAGTGCTGGGGGTG
CGGAAGAGACAACGGCTACGGCGGCGGGGATGGGCGACGGAAAAGGATTT
TCCGGGAAAGTCGGAAAATACGGACGACTACTGCTTGTGGCGGCGGTGGT
TGGGTTCAAGATAGTGGAGTGGTGGACCAGGGTTGAGGCGCAGATGGTTG
TTCGGCGCACCACGTACGAAGACTATCAAGAAGACGTCCAAGCGGCCGCC
GCGGCGGCTGCCGCAGCAACTTCGGCGTCAAGTGCTGGGGGTGCGGAAGA
GACAACGGCTACGGCGGCGGGGATGGGCGACGGAAAAGGATTTTCCGGGA
AAGTCGGAAAATACGGACGACTACTGCTTGTGGCGGCGGTGGTTGGGTTC
AAGATAGTGGAGTGGTGGACCAGGGTTGAGGCGCAGGAGGGTTCCTCGTG
GAGACGTTCGAGGCTGCCGCAGTCCCTGCCGCCGCCGCAACCGCCAACCC
CGGCCGCAGGAGGCTGTGGAGTTCCAGCGGATTGCGGGGTATGTCCGTCT
TGCGGAGGTGCGCGGGTGAACCCCACCCTGTGTGCCGCATCCGGCTTCGT
GTTTTGTTATCGTTGTCTCTCGAGACACGTGAGGGAACATGGGGAATGCC
CTGTGACAGGGTTGGCATGTGGAGCGGCGGGTGTTGTGAGGTTGTACGAT
GACGATGAGGGTGCTAGCGGTGGTGGTGGTGGTGTGTGAGAGGGTTCCTC
GTGGAGACGTTCGAGGCTGCCGCAGTCCCTGCCGCCGCCGCAACCGCCAA
CCCCGGCCGCAGGAGGCTGTGGAGTTCCAGCGGATTGCGGGGTATGTCCG
TCTTGCGGAGGTGCGCGGGTGAACCCCACCCTGTGTGCCGCATCCGGCTT
CGTGTTTTGTTATCGTTGTCTCTCGAGACACGTGAGGGAACATGGGGAAT
GCCCTGTGACAGGGTTGGCATGTGGAGCGGCGGGTGTTGTGAGGTTGTAC
GATGACGATGAGGGTGCTAGCGGTGGTGGTGGTGGTGTGTGA
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