prot_H-paniculata_contig18338.4489.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig18338.4489.1
Unique Nameprot_H-paniculata_contig18338.4489.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length61
Homology
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BLAST of mRNA_H-paniculata_contig18338.4489.1 vs. uniprot
Match: D7G6K8_ECTSI (DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K8_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.330e-14
Identity = 44/78 (56.41%), Postives = 53/78 (67.95%), Query Frame = 0 
Query:    1 QGLEFDTVVLADDFLELSDIPLS-----------------VNILYVAVTRAKYQLILNASLRDFLTLTAAWNSVYLRG 61
            +GLEFDTVVLADDF+E+ DI  +                 VNILYVAVTRAK +L++N+SLR FL +T AWNSV LRG
Sbjct: 1114 KGLEFDTVVLADDFIEVDDIRWTTGPCPQPVWDSEAEKEEVNILYVAVTRAKRRLVVNSSLRAFLLVTGAWNSVSLRG 1191
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BLAST of mRNA_H-paniculata_contig18338.4489.1 vs. uniprot
Match: D7FLU8_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU8_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.100e-7
Identity = 39/70 (55.71%), Postives = 45/70 (64.29%), Query Frame = 0 
Query:    1 QGLEFDTVVLADDF-LELSD--IPL------SVNILYVAVTRAKYQLILNASLRDFLTLTAAWNSVYLRG 61
            +GLE+DTVVLADDF  EL D   PL      S N+LYVAVTRAK QLILN  L   L     W+S+ L+G
Sbjct:  569 KGLEYDTVVLADDFSFELVDGSSPLRKSATESANLLYVAVTRAKRQLILNKKLAHQLRSFGMWDSLALQG 638
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18338.4489.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6K8_ECTSI1.330e-1456.41DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
D7FLU8_ECTSI1.100e-755.71DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 1..60
e-value: 1.5E-7
score: 33.0
IPR027785UvrD-like helicase C-terminal domainPFAMPF13538UvrD_C_2coord: 1..40
e-value: 8.0E-10
score: 38.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 1..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18338contigH-paniculata_contig18338:4063..4844 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18338.4489.1mRNA_H-paniculata_contig18338.4489.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig18338 4063..4844 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig18338.4489.1 ID=prot_H-paniculata_contig18338.4489.1|Name=mRNA_H-paniculata_contig18338.4489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
QGLEFDTVVLADDFLELSDIPLSVNILYVAVTRAKYQLILNASLRDFLTL
TAAWNSVYLRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027785UvrD-like_helicase_C
IPR027417P-loop_NTPase