mRNA_H-paniculata_contig18338.4489.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18338.4489.1
Unique NamemRNA_H-paniculata_contig18338.4489.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18338.4489.1 vs. uniprot
Match: D7G6K8_ECTSI (DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K8_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.330e-14
Identity = 44/78 (56.41%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:    1 QGLEFDTVVLADDFLELSDIPLS-----------------VNILYVAVTRAKYQLILNASLRDFLTLTAAWNSVYLRG 183
            +GLEFDTVVLADDF+E+ DI  +                 VNILYVAVTRAK +L++N+SLR FL +T AWNSV LRG
Sbjct: 1114 KGLEFDTVVLADDFIEVDDIRWTTGPCPQPVWDSEAEKEEVNILYVAVTRAKRRLVVNSSLRAFLLVTGAWNSVSLRG 1191
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BLAST of mRNA_H-paniculata_contig18338.4489.1 vs. uniprot
Match: D7FLU8_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU8_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.100e-7
Identity = 39/70 (55.71%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    1 QGLEFDTVVLADDF-LELSD--IPL------SVNILYVAVTRAKYQLILNASLRDFLTLTAAWNSVYLRG 183
            +GLE+DTVVLADDF  EL D   PL      S N+LYVAVTRAK QLILN  L   L     W+S+ L+G
Sbjct:  569 KGLEYDTVVLADDFSFELVDGSSPLRKSATESANLLYVAVTRAKRQLILNKKLAHQLRSFGMWDSLALQG 638
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18338.4489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6K8_ECTSI1.330e-1456.41DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
D7FLU8_ECTSI1.100e-755.71DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18338contigH-paniculata_contig18338:4063..4844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog2880.D7G6K8
Preferred nameFBXO18
KEGG koko:K10300
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000151,GO:0000152,GO:0000724,GO:0000725,GO:0000737,GO:0000785,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003697,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006282,GO:0006302,GO:0006308,GO:0006310,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008156,GO:0008219,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009607,GO:0009719,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010498,GO:0010556,GO:0010558,GO:0010562,GO:0010569,GO:0010604,GO:0010605,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0015616,GO:0016043,GO:0016462,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017116,GO:0017117,GO:0019005,GO:0019219,GO:0019220,GO:0019222,GO:0019439,GO:0019538,GO:0019941,GO:0023051,GO:0023056,GO:0030163,GO:0030674,GO:0031146,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031401,GO:0031461,GO:0032268,GO:0032270,GO:0032392,GO:0032446,GO:0032508,GO:0032991,GO:0033202,GO:0033554,GO:0034641,GO:0034645,GO:0034655,GO:0035561,GO:0035562,GO:0036211,GO:0042325,GO:0042327,GO:0042623,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043138,GO:0043140,GO:0043142,GO:0043161,GO:0043170,GO:0043224,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043632,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045005,GO:0045738,GO:0045910,GO:0045934,GO:0045937,GO:0046483,GO:0046700,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051276,GO:0051603,GO:0051716,GO:0060090,GO:0060255,GO:0060542,GO:0065007,GO:0065009,GO:0070035,GO:0070647,GO:0071103,GO:0071216,GO:0071495,GO:0071704,GO:0071840,GO:0072396,GO:0072402,GO:0072423,GO:0072429,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090329,GO:0097159,GO:0140097,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1902229,GO:1902231,GO:1902494,GO:1902531,GO:1902533,GO:1904949,GO:1990234,GO:1990518,GO:2000042,GO:2000104,GO:2000112,GO:2000113,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001022,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG0210@1,KOG2108@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons2
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929423.702875-CDS-H-paniculata_contig18338:4062..41761622929423.702875-CDS-H-paniculata_contig18338:4062..4176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18338 4063..4176 -
1691480855.0192108-CDS-H-paniculata_contig18338:4062..41761691480855.0192108-CDS-H-paniculata_contig18338:4062..4176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18338 4063..4176 -
1622929423.7180178-CDS-H-paniculata_contig18338:4775..48441622929423.7180178-CDS-H-paniculata_contig18338:4775..4844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18338 4776..4844 -
1691480855.0318656-CDS-H-paniculata_contig18338:4775..48441691480855.0318656-CDS-H-paniculata_contig18338:4775..4844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18338 4776..4844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18338.4489.1prot_H-paniculata_contig18338.4489.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18338 4063..4844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18338.4489.1

>prot_H-paniculata_contig18338.4489.1 ID=prot_H-paniculata_contig18338.4489.1|Name=mRNA_H-paniculata_contig18338.4489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
QGLEFDTVVLADDFLELSDIPLSVNILYVAVTRAKYQLILNASLRDFLTL
TAAWNSVYLRG
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mRNA from alignment at H-paniculata_contig18338:4063..4844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18338.4489.1 ID=mRNA_H-paniculata_contig18338.4489.1|Name=mRNA_H-paniculata_contig18338.4489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=782bp|location=Sequence derived from alignment at H-paniculata_contig18338:4063..4844- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGGTTGGAATTCGACACTGTCGTTCTGGCGGACGATTTCTTGGAGCT
ATCCGACATTCCTTTGAGTGTGTCACCGGAAGACTACGATGAGCTGTCGG
ACTCGTCTTCGGTAGTCGAAGAGGTGGGTCGGCTCCACACCCAGGCATAC
GGAGAACAGCAAGCTACTTTCCGTTACAGTTGACAAACTTCTGTATGGTA
GCGGAGCTAGTCTTCTGTTATACGCAGTAATGTTTGTATGAAGTACTTCA
ACTTTTTTGATGCGATCATAAAGTTTTTTTCGGTTTTGTAAATCAGGATT
TGTTCCACGTCAAATGATGCGGATTCTGTAGCGCCTTGTCATTTCGGGGT
GATGAGTTTCCTCTCAACCAAATTTTCTGGGAAACCACAGGGTTCGTGAC
ACCGAGAGTTGTGCTATTAGGAAAACATCGTTGAGATCTGTCGTTAGATT
GACGTGTTCTTTCGACCGAGCAGGGTCTGACTTCTCGGGTATGCGTTTGT
GCTAAGCATCCACGTGCTGCAACGACAGTTATACCAAAGATATACGAAAA
GCAGGATCCAAATGCTGACTTGTTTTCATGCCCATATATTCTCCGTAACC
TAGTTTTGTCCAATGGCTGTGGGCCGATTAACCCTCTCTCTCTTTGTTAT
CAATTTCTGCTATTCAAGGTGAACATCCTGTACGTGGCGGTTACAAGGGC
GAAATATCAGCTGATACTGAACGCCTCCCTCAGAGATTTCCTTACGCTCA
CGGCCGCCTGGAACAGCGTATATCTGAGAGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig18338:4063..4844-

>mRNA_H-paniculata_contig18338.4489.1 ID=mRNA_H-paniculata_contig18338.4489.1|Name=mRNA_H-paniculata_contig18338.4489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig18338:4063..4844- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGGTTGGAATTCGACACTGTCGTTCTGGCGGACGATTTCTTGGAGCT
ATCCGACATTCCTTTGAGTCAGGGGTTGGAATTCGACACTGTCGTTCTGG
CGGACGATTTCTTGGAGCTATCCGACATTCCTTTGAGTGTGAACATCCTG
TACGTGGCGGTTACAAGGGCGAAATATCAGCTGATACTGAACGCCTCCCT
CAGAGATTTCCTTACGCTCACGGCCGCCTGGAACAGCGTATATCTGAGAG
GCGTGAACATCCTGTACGTGGCGGTTACAAGGGCGAAATATCAGCTGATA
CTGAACGCCTCCCTCAGAGATTTCCTTACGCTCACGGCCGCCTGGAACAG
CGTATATCTGAGAGGC
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