mRNA_H-paniculata_contig1832.4485.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1832.4485.1
Unique NamemRNA_H-paniculata_contig1832.4485.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1832.4485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1832contigH-paniculata_contig1832:2526..5590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size215
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929423.0188842-CDS-H-paniculata_contig1832:2525..27001622929423.0188842-CDS-H-paniculata_contig1832:2525..2700Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1832 2526..2700 -
1691480854.6986935-CDS-H-paniculata_contig1832:2525..27001691480854.6986935-CDS-H-paniculata_contig1832:2525..2700Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1832 2526..2700 -
1622929423.0448217-CDS-H-paniculata_contig1832:5552..55901622929423.0448217-CDS-H-paniculata_contig1832:5552..5590Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1832 5553..5590 -
1691480854.7093499-CDS-H-paniculata_contig1832:5552..55901691480854.7093499-CDS-H-paniculata_contig1832:5552..5590Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1832 5553..5590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1832.4485.1prot_H-paniculata_contig1832.4485.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1832 2526..5590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1832.4485.1

>prot_H-paniculata_contig1832.4485.1 ID=prot_H-paniculata_contig1832.4485.1|Name=mRNA_H-paniculata_contig1832.4485.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
VRERERTKELLSTRQVILDELHYAEQGLCLTVGPVLTVEMGQASNGHGYE
FSCRACEGAGRMAPKLITVE*
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mRNA from alignment at H-paniculata_contig1832:2526..5590-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1832.4485.1 ID=mRNA_H-paniculata_contig1832.4485.1|Name=mRNA_H-paniculata_contig1832.4485.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3065bp|location=Sequence derived from alignment at H-paniculata_contig1832:2526..5590- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAGAGAACGAGAGAGAACTAAAGAGTTATTATCAACGTGAGTCTATTC
TTCAACCGATCTCACGCTGCAACAAATGTATCGTGTGTAGCGAAGAGGCG
TGTAAGTGCTTGTTGACAGTTGTTAGTCGTCGTCAGACAGACATATCGCA
GAATCTCTCCGACTCTCTAGACACAAACAGGGGAAACGGACACGGAAACG
AAGACAAGAGCATTTCCGCTTTTGAGTATCATGTCTGAAGGGTTTTCGTA
GGTTGCCCACAAAACACGCCCGTTTGTGTTTTCGTTTTCAACCTATTATT
CTACCCAAACCAAGTAAAGGGACCCGGTGGACGAAGAGGTTTCGGCCTGA
ACGATTTTTTATTATCCTCTCACAGATGGTAATTATGTGGGGAACGGTGT
ATGGTCTTTGGCTGCATTCATTATTGTGCCCACCAACGACCAAATCTGGT
TTGAGATGCATTAGTATATTTACCGGCAGCTCCTGCTTGGAGATGCGGGG
GTTGAATGAGCTGTAAGTGAAGGATCGGAAAGAAGCGAGATCTGGTATTT
GCGGATGGGGTTTGAATGTTACTTACACTCAAGAAAAAACCGGAAGATTA
ATTGGATTATAGAATGGTTTGAGATGGCAAGCCGGATTCCGGAGGTAAAG
TTAGAAGGACCACGAGTGCAGTATTCAGTGGGATTGTTCCTGAGCACGCA
GTATCTCCCAGAGAATAGCAGTACAGTTTCTTTACGGCCTACACACGCGC
GCGGGTTCACGCCAACGCATCACGAGGTGGCTCTGCATCACAGCCAAGGG
CTTGTGGCCAACGGCTGTGAAGAGCTTTAGAAGAATGTTTTTTAAGGCGT
ATACAACAAAAACAAGTGTAATCACTACCATATACAAATCCGGTCAGTAT
ATTTCGCCGCGGGCAGAGTCGGCGACGGCGGCAGCGGTAGAGGCGGTGGC
GGTCGTGGGGTTGCGAATGCCGACAATCTGGCGATAATGCCTTTCGCTGG
TTTCGGCGGGGGCGGTGGTGCGGCACAGCTTGCACAAAACAGCCCCTAGG
TAGCAGGCAGGCGGGGCAGCGCGCTCCGGTGTTGGAGAGTGGATCGTTTG
GCAGACGCCAATGGGGGCGTGGCGGCGGTGGCAGCGGCGGCGGCAACCGA
GGCCCGGGGGGGCAAATATGAGAGCACTGGCTCCGCAGTGCGGAACCAAT
GCTATCGATGAGGGATCGGGGGACGGTAGGCGGACGCCGAGTTCCACGGT
TATGGGCTACCGATGCGGGAAGCCAGACTAGTTCGGAAGATGTGTACCGT
TGAACACACATGAATGTGATGTTTGTCACCTGTGTGACTTCATGAACGTA
TAGCAGCATACGAAGTAGCCGCTACCAACTCGGTGTGTTTATATCTCGGC
CGCGCGGTCGAGGCATACCACCACTACATGGAATTTGTGATATGAACATG
TCGATTCGACCAGTTAGACTGCATGTCAGCGGTTTCGTTATAATACGTCA
CACGCGTAGAATTTGCAATACGAGTGTATCGATCAGGTTTGATTGCGTGT
CAAGGGCCTTGTCACAGTACATCGCATGCGTAGAATTTGCGGCATGAGTG
TGCCGACCAGTTTTGACTACATGTCAATGATTTTGTCACAATACGTCGCA
CGCAACATAGAGTTTACGATATACGTGTGTTGACCAGTTTTGAATACATG
TCAATGATTTTGTCACAATACGTCGCACGCAACATAGAGTTTACGATATA
CGTGTGTCGACCAGTTTTGACTACATGTCAATGATTTTGTCACAATACGT
CGCACGCAACATAGAGTTTACGATATACATGTGTCGACCAGTTTGAATGC
GCCTCGATGGTGTATCACATTACGTCGCACGAAGCAACGCTATGAATTTG
GCGTGTTTTTTCGATATCGGCCACGCGATCGAGAATTACCACCAGGGCAT
AGAATTGACTTACAAATATATCGACCAGTCTGAATGCACGTCATTGGTTG
TGGCACCATACATCACATGCAGCAACGCATTACTATTGAAAATCAGTTTA
CTTATAGCCCGGGCCACTGAGGATGACTTAGCGCCATATAGCAGCAAGCG
CAGAAGTCGCAAGCCGCTACTCAATTATACACCCCCCGGACAAATACCAA
TACTTGCAAATGGTTTTCACGAAAAACTGAAAGTATTCGCCTGAGTTTTA
TGAATGGAGACGTAGAATAAAATACCCACCCCTGTCCAGTCGATTTACTG
GTATTATTAGCAGTCCTGGATGGCCCAGGGCACATAGAATACACGAGCTT
GTTCTGAAACTCAGGCGAAATCTTTCAGTTTTTTGTGAAAACCATTTGCG
AGTATTCGTATTTGTCTGGGGGATGCAATTATAGGATTCGGTGCACTTGT
AGATCGGACGGTCGAAAGTGCGATTTGACAGTCCAGCATCAAATGTAACC
TGCAGCAATATATTTAGATGTCAATTTTGTTACAAACATTGTATGACCCG
TCAATGTGTGGCTTACCGGTCAGGCAGCTGGGGGGGCGTTACGCCAGTGA
AAATTTTGCTCATTGATTTATGGAACGCTTTCAGAGAAATGATGAGTTAT
ATCTAGCATTTCCTTTGTCACTAGCGGATGGGACATTTTGAAGAGATAAT
TGGGAAACCTTCACATATATTCTTCAAGGATACCACGATTTAGTGTATTT
TACCATCTAAAGCTAAGTCCCTCTGCCTTTGTTAATGCTTCATTCCATCT
ATTTAATTTCACGTTTATTTCGATTGTTATTTAGCATGTTGTAATAGCTT
TTTACCTCATACTTGAAAATGGCACTTTTCATACAACATACATAATTTCA
GACGCAGCTATGTACTTGTTCCGTGATACTGATTATACAGACGGCAGGTA
ATACTCGATGAATTGCACTATGCGGAACAGGGACTCTGCCTCACGGTTGG
ACCCGTATTGACGGTGGAGATGGGTCAGGCATCTAACGGGCATGGCTACG
AATTCAGCTGCAGAGCATGTGAGGGTGCGGGGCGAATGGCGCCTAAACTT
ATCACGGTTGAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1832:2526..5590-

>mRNA_H-paniculata_contig1832.4485.1 ID=mRNA_H-paniculata_contig1832.4485.1|Name=mRNA_H-paniculata_contig1832.4485.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig1832:2526..5590- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAGAGAACGAGAGAGAACTAAAGAGTTATTATCAACGTGAGAGAACGA
GAGAGAACTAAAGAGTTATTATCAACACGGCAGGTAATACTCGATGAATT
GCACTATGCGGAACAGGGACTCTGCCTCACGGTTGGACCCGTATTGACGG
TGGAGATGGGTCAGGCATCTAACGGGCATGGCTACGAATTCAGCTGCAGA
GCATGTGAGGGTGCGGGGCGAATGGCGCCTAAACTTATCACGGTTGAATG
AACGGCAGGTAATACTCGATGAATTGCACTATGCGGAACAGGGACTCTGC
CTCACGGTTGGACCCGTATTGACGGTGGAGATGGGTCAGGCATCTAACGG
GCATGGCTACGAATTCAGCTGCAGAGCATGTGAGGGTGCGGGGCGAATGG
CGCCTAAACTTATCACGGTTGAATGA
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