mRNA_H-paniculata_contig18313.4483.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18313.4483.1
Unique NamemRNA_H-paniculata_contig18313.4483.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18313.4483.1 vs. uniprot
Match: D7FLS0_ECTSI (Zeta_toxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLS0_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 3.580e-19
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 VWAPEDKVMERAASRAAQTGRVIPPSTLRETVRAVPVSVEHLAPLADYCVRIDNAGE 171
            VWAPE++VM+RA  R   TGRVIPPS LR+T+RAVP SVE LAPLADYCVRIDN G+
Sbjct:  324 VWAPEEEVMKRAVRRGLTTGRVIPPSVLRDTIRAVPRSVEMLAPLADYCVRIDNVGD 380
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BLAST of mRNA_H-paniculata_contig18313.4483.1 vs. uniprot
Match: A0A6H5KYQ7_9PHAE (Zeta_toxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ7_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.250e-18
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 VWAPEDKVMERAASRAAQTGRVIPPSTLRETVRAVPVSVEHLAPLADYCVRIDNAGE 171
            VWAPE++VM+RA  R   TGRVIPP+ LR+T+RAVP SVE LAPLADYCVRIDN G+
Sbjct:  322 VWAPEEEVMKRAVRRGLTTGRVIPPALLRDTIRAVPRSVEMLAPLADYCVRIDNVGD 378
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18313.4483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLS0_ECTSI3.580e-1973.68Zeta_toxin domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5KYQ7_9PHAE1.250e-1871.93Zeta_toxin domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18313contigH-paniculata_contig18313:4471..4641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue2.3e-11
Seed eggNOG ortholog2880.D7FLS0
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Zeta toxin
EggNOG OGs2BIBQ@1,2S1DY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size171
Cds size147
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929422.8983002-CDS-H-paniculata_contig18313:4470..46171622929422.8983002-CDS-H-paniculata_contig18313:4470..4617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18313 4471..4617 -
1691480854.6527667-CDS-H-paniculata_contig18313:4470..46171691480854.6527667-CDS-H-paniculata_contig18313:4470..4617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18313 4471..4617 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929422.9110053-UTR-H-paniculata_contig18313:4617..46411622929422.9110053-UTR-H-paniculata_contig18313:4617..4641Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18313 4618..4641 -
1691480854.665479-UTR-H-paniculata_contig18313:4617..46411691480854.665479-UTR-H-paniculata_contig18313:4617..4641Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18313 4618..4641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18313.4483.1prot_H-paniculata_contig18313.4483.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18313 4471..4617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18313.4483.1

>prot_H-paniculata_contig18313.4483.1 ID=prot_H-paniculata_contig18313.4483.1|Name=mRNA_H-paniculata_contig18313.4483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
MERAASRAAQTGRVIPPSTLRETVRAVPVSVEHLAPLADYCVRIDNAGE
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mRNA from alignment at H-paniculata_contig18313:4471..4641-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18313.4483.1 ID=mRNA_H-paniculata_contig18313.4483.1|Name=mRNA_H-paniculata_contig18313.4483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at H-paniculata_contig18313:4471..4641- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTGGGCTCCTGAAGACAAGGTTATGGAGCGAGCTGCCAGCCGCGCAGC
GCAGACGGGACGCGTGATACCGCCGTCCACCCTCCGGGAAACCGTTCGTG
CTGTGCCGGTGTCTGTGGAGCACCTGGCACCGCTCGCTGACTATTGTGTG
CGTATAGACAACGCCGGGGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig18313:4471..4641-

>mRNA_H-paniculata_contig18313.4483.1 ID=mRNA_H-paniculata_contig18313.4483.1|Name=mRNA_H-paniculata_contig18313.4483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig18313:4471..4641- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCGAGCTGCCAGCCGCGCAGCGCAGACGGGACGCGTGATACCGCC
GTCCACCCTCCGGGAAACCGTTCGTGCTGTGCCGGTGTCTGTGGAGCACC
TGGCACCGCTCGCTGACTATTGTGTGCGTATAGACAACGCCGGGGAAATG
GAGCGAGCTGCCAGCCGCGCAGCGCAGACGGGACGCGTGATACCGCCGTC
CACCCTCCGGGAAACCGTTCGTGCTGTGCCGGTGTCTGTGGAGCACCTGG
CACCGCTCGCTGACTATTGTGTGCGTATAGACAACGCCGGGGAA
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