mRNA_H-paniculata_contig18302.4482.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Match: A0A177TFL0_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TFL0_9BASI) HSP 1 Score: 87.4 bits (215), Expect = 3.700e-18 Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = 1
Query: 1 KAICTKYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTSTLRTVYSLAAEHDFELEDIDVDAAYLNAPQKQSCLLSYP 267
KAI +++++K KL EDG R+KARLVAQGF+QV G D+FET APVAR +LR + +LAA D+ + +DV AYLN ++ + P
Sbjct: 790 KAIGSRWVYKLKLDEDGVAHRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAAHFDWVIHQVDVVTAYLNGDLEEEVYIRQP 878
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Match: A0A6L2NKU3_TANCI (Zinc finger, CCHC-type (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NKU3_TANCI) HSP 1 Score: 87.0 bits (214), Expect = 4.820e-18 Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = 1
Query: 16 KYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTSTLRTVYSLAAEHDFELEDIDVDAAYLNAPQKQSCLLSYP 267
K+I KRK+K DGS+ +YKARLV QGF Q G DFF+T APVAR ST+R + +LAA HD + +DV A+LNA + + P
Sbjct: 285 KWILKRKMKVDGSIDKYKARLVIQGFRQKNGIDFFDTYAPVARISTIRLLLALAAIHDLVIHQMDVKTAFLNADLDEEIYMKQP 368
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Match: A0A6L2LJ48_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LJ48_TANCI) HSP 1 Score: 86.7 bits (213), Expect = 6.320e-18 Identity = 45/89 (50.56%), Postives = 59/89 (66.29%), Query Frame = 1
Query: 1 KAICTKYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTSTLRTVYSLAAEHDFELEDIDVDAAYLNAPQKQSCLLSYP 267
KA+ K+I KRK+K DGS+ +YKARLV QGF Q G DFF+T APVAR ST+R + +LAA HD + +DV A+LN + + P
Sbjct: 16 KALRCKWIIKRKMKVDGSIDKYKARLVIQGFRQNEGIDFFDTYAPVARISTIRLLLALAAIHDLVIHQMDVKTAFLNGDLDEEIYMKQP 104
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Match: A0A5E8C1W8_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1W8_9ASCO) HSP 1 Score: 84.7 bits (208), Expect = 8.620e-18 Identity = 44/89 (49.44%), Postives = 60/89 (67.42%), Query Frame = 1
Query: 1 KAICTKYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTSTLRTVYSLAAEHDFELEDIDVDAAYLNAPQKQSCLLSYP 267
KAI +K++FK K K DGS+ RYKARLV GFSQV G D+ ET APV R T+R V ++AA+ F++ +DV+ A+LN K+ + P
Sbjct: 109 KAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQP 197
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Match: A0A427Y2R1_9TREE (Integrase catalytic domain-containing protein n=1 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427Y2R1_9TREE) HSP 1 Score: 86.3 bits (212), Expect = 9.310e-18 Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 1
Query: 7 ICTKYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTSTLRTVYSLAAEHDFELEDIDVDAAYLNAPQKQSCLLSYP 267
I +++FKRK E G V R+KAR+VA+G+SQV G DF +T APV RT++LR + +LAA+ D EL DV+ AYLN ++ +++P
Sbjct: 413 IGVRWVFKRKRDEKGQVVRWKARIVAKGYSQVPGVDFEQTYAPVGRTTSLRILLTLAAQRDLELRQADVEGAYLNGTLEEEIYMAFP 499
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Match: A0A427YXG2_9TREE (Uncharacterized protein n=1 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427YXG2_9TREE) HSP 1 Score: 86.3 bits (212), Expect = 9.390e-18 Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 1
Query: 7 ICTKYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTSTLRTVYSLAAEHDFELEDIDVDAAYLNAPQKQSCLLSYP 267
I +++FKRK E G V R+KAR+VA+G+SQV G DF +T APV RT++LR + +LAA+ D EL DV+ AYLN ++ +++P
Sbjct: 951 IGVRWVFKRKRDEKGQVVRWKARIVAKGYSQVPGVDFEQTYAPVGRTTSLRILLTLAAQRDLELRQADVEGAYLNGTLEEEIYMAFP 1037
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Match: A0A427YVD8_9TREE (Uncharacterized protein n=12 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427YVD8_9TREE) HSP 1 Score: 86.3 bits (212), Expect = 9.450e-18 Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 1
Query: 7 ICTKYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTSTLRTVYSLAAEHDFELEDIDVDAAYLNAPQKQSCLLSYP 267
I +++FKRK E G V R+KAR+VA+G+SQV G DF +T APV RT++LR + +LAA+ D EL DV+ AYLN ++ +++P
Sbjct: 951 IGVRWVFKRKRDEKGQVVRWKARIVAKGYSQVPGVDFEQTYAPVGRTTSLRILLTLAAQRDLELRQADVEGAYLNGTLEEEIYMAFP 1037
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Match: A0A409WYT1_9AGAR (Uncharacterized protein n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409WYT1_9AGAR) HSP 1 Score: 86.3 bits (212), Expect = 9.480e-18 Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 1
Query: 13 TKYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTSTLRTVYSLAAEHDFELEDIDVDAAYLN 231
+K++F+ K G+V RYKARLVAQGFSQV G D+F+T APVAR +++RTV ++AA DFE+ ID+ AYLN
Sbjct: 1109 SKWVFRAKKDAAGNVIRYKARLVAQGFSQVPGVDYFDTFAPVARLASIRTVLAIAAVEDFEIHQIDIKGAYLN 1181
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Match: A0A5N6Q4G6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q4G6_9ASTR) HSP 1 Score: 84.0 bits (206), Expect = 1.470e-17 Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 1
Query: 1 KAICTKYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTSTLRTVYSLAAEHDFELEDIDVDAAYLNAPQKQSCLLSYP 267
K + K+IFKRK+K DGS+ +YKARLV QGF Q G DFF+T APVAR ST+R + +LA+ H + +DV A+LN + + P
Sbjct: 20 KPLGCKWIFKRKMKVDGSIDKYKARLVIQGFRQKEGTDFFDTYAPVARISTIRLLIALASIHKLLIHQMDVKTAFLNGELDEEVYMKQP 108
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Match: A0A075B0S6_ROZAC (Reverse transcriptase, RNA-dependent DNA polymerase domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B0S6_ROZAC) HSP 1 Score: 85.5 bits (210), Expect = 1.640e-17 Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = 1
Query: 1 KAICTKYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTSTLRTVYSLAAEHDFELEDIDVDAAYLNAPQKQSCLLSYP 267
K + +++F+ K DGSVARYKARLVA+G+SQV G DF ET APVA+ +LRT+ S+AA D+E+E +DV A+L K+ + P
Sbjct: 156 KIVKCRWVFRIKRHSDGSVARYKARLVAKGYSQVPGQDFSETYAPVAKYKSLRTMLSIAASRDYEIEQMDVVTAFLIPSLKEEVYMEIP 244 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18302.4482.1 >prot_H-paniculata_contig18302.4482.1 ID=prot_H-paniculata_contig18302.4482.1|Name=mRNA_H-paniculata_contig18302.4482.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp KAICTKYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTSback to top mRNA from alignment at H-paniculata_contig18302:4852..5118+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18302.4482.1 ID=mRNA_H-paniculata_contig18302.4482.1|Name=mRNA_H-paniculata_contig18302.4482.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at H-paniculata_contig18302:4852..5118+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18302:4852..5118+ >mRNA_H-paniculata_contig18302.4482.1 ID=mRNA_H-paniculata_contig18302.4482.1|Name=mRNA_H-paniculata_contig18302.4482.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig18302:4852..5118+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |