mRNA_H-paniculata_contig18302.4482.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18302.4482.1
Unique NamemRNA_H-paniculata_contig18302.4482.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Match: A0A177TFL0_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TFL0_9BASI)

HSP 1 Score: 87.4 bits (215), Expect = 3.700e-18
Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    1 KAICTKYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTSTLRTVYSLAAEHDFELEDIDVDAAYLNAPQKQSCLLSYP 267
            KAI +++++K KL EDG   R+KARLVAQGF+QV G D+FET APVAR  +LR + +LAA  D+ +  +DV  AYLN   ++   +  P
Sbjct:  790 KAIGSRWVYKLKLDEDGVAHRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAAHFDWVIHQVDVVTAYLNGDLEEEVYIRQP 878          
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Match: A0A6L2NKU3_TANCI (Zinc finger, CCHC-type (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NKU3_TANCI)

HSP 1 Score: 87.0 bits (214), Expect = 4.820e-18
Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = 1
Query:   16 KYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTSTLRTVYSLAAEHDFELEDIDVDAAYLNAPQKQSCLLSYP 267
            K+I KRK+K DGS+ +YKARLV QGF Q  G DFF+T APVAR ST+R + +LAA HD  +  +DV  A+LNA   +   +  P
Sbjct:  285 KWILKRKMKVDGSIDKYKARLVIQGFRQKNGIDFFDTYAPVARISTIRLLLALAAIHDLVIHQMDVKTAFLNADLDEEIYMKQP 368          
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Match: A0A6L2LJ48_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LJ48_TANCI)

HSP 1 Score: 86.7 bits (213), Expect = 6.320e-18
Identity = 45/89 (50.56%), Postives = 59/89 (66.29%), Query Frame = 1
Query:    1 KAICTKYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTSTLRTVYSLAAEHDFELEDIDVDAAYLNAPQKQSCLLSYP 267
            KA+  K+I KRK+K DGS+ +YKARLV QGF Q  G DFF+T APVAR ST+R + +LAA HD  +  +DV  A+LN    +   +  P
Sbjct:   16 KALRCKWIIKRKMKVDGSIDKYKARLVIQGFRQNEGIDFFDTYAPVARISTIRLLLALAAIHDLVIHQMDVKTAFLNGDLDEEIYMKQP 104          
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Match: A0A5E8C1W8_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1W8_9ASCO)

HSP 1 Score: 84.7 bits (208), Expect = 8.620e-18
Identity = 44/89 (49.44%), Postives = 60/89 (67.42%), Query Frame = 1
Query:    1 KAICTKYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTSTLRTVYSLAAEHDFELEDIDVDAAYLNAPQKQSCLLSYP 267
            KAI +K++FK K K DGS+ RYKARLV  GFSQV G D+ ET APV R  T+R V ++AA+  F++  +DV+ A+LN   K+   +  P
Sbjct:  109 KAINSKWVFKVKRKADGSIERYKARLVCIGFSQVEGIDYTETFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQP 197          
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Match: A0A427Y2R1_9TREE (Integrase catalytic domain-containing protein n=1 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427Y2R1_9TREE)

HSP 1 Score: 86.3 bits (212), Expect = 9.310e-18
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    7 ICTKYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTSTLRTVYSLAAEHDFELEDIDVDAAYLNAPQKQSCLLSYP 267
            I  +++FKRK  E G V R+KAR+VA+G+SQV G DF +T APV RT++LR + +LAA+ D EL   DV+ AYLN   ++   +++P
Sbjct:  413 IGVRWVFKRKRDEKGQVVRWKARIVAKGYSQVPGVDFEQTYAPVGRTTSLRILLTLAAQRDLELRQADVEGAYLNGTLEEEIYMAFP 499          
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Match: A0A427YXG2_9TREE (Uncharacterized protein n=1 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427YXG2_9TREE)

HSP 1 Score: 86.3 bits (212), Expect = 9.390e-18
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    7 ICTKYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTSTLRTVYSLAAEHDFELEDIDVDAAYLNAPQKQSCLLSYP 267
            I  +++FKRK  E G V R+KAR+VA+G+SQV G DF +T APV RT++LR + +LAA+ D EL   DV+ AYLN   ++   +++P
Sbjct:  951 IGVRWVFKRKRDEKGQVVRWKARIVAKGYSQVPGVDFEQTYAPVGRTTSLRILLTLAAQRDLELRQADVEGAYLNGTLEEEIYMAFP 1037          
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Match: A0A427YVD8_9TREE (Uncharacterized protein n=12 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427YVD8_9TREE)

HSP 1 Score: 86.3 bits (212), Expect = 9.450e-18
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    7 ICTKYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTSTLRTVYSLAAEHDFELEDIDVDAAYLNAPQKQSCLLSYP 267
            I  +++FKRK  E G V R+KAR+VA+G+SQV G DF +T APV RT++LR + +LAA+ D EL   DV+ AYLN   ++   +++P
Sbjct:  951 IGVRWVFKRKRDEKGQVVRWKARIVAKGYSQVPGVDFEQTYAPVGRTTSLRILLTLAAQRDLELRQADVEGAYLNGTLEEEIYMAFP 1037          
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Match: A0A409WYT1_9AGAR (Uncharacterized protein n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409WYT1_9AGAR)

HSP 1 Score: 86.3 bits (212), Expect = 9.480e-18
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 1
Query:   13 TKYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTSTLRTVYSLAAEHDFELEDIDVDAAYLN 231
            +K++F+ K    G+V RYKARLVAQGFSQV G D+F+T APVAR +++RTV ++AA  DFE+  ID+  AYLN
Sbjct: 1109 SKWVFRAKKDAAGNVIRYKARLVAQGFSQVPGVDYFDTFAPVARLASIRTVLAIAAVEDFEIHQIDIKGAYLN 1181          
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Match: A0A5N6Q4G6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q4G6_9ASTR)

HSP 1 Score: 84.0 bits (206), Expect = 1.470e-17
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    1 KAICTKYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTSTLRTVYSLAAEHDFELEDIDVDAAYLNAPQKQSCLLSYP 267
            K +  K+IFKRK+K DGS+ +YKARLV QGF Q  G DFF+T APVAR ST+R + +LA+ H   +  +DV  A+LN    +   +  P
Sbjct:   20 KPLGCKWIFKRKMKVDGSIDKYKARLVIQGFRQKEGTDFFDTYAPVARISTIRLLIALASIHKLLIHQMDVKTAFLNGELDEEVYMKQP 108          
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Match: A0A075B0S6_ROZAC (Reverse transcriptase, RNA-dependent DNA polymerase domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B0S6_ROZAC)

HSP 1 Score: 85.5 bits (210), Expect = 1.640e-17
Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    1 KAICTKYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTSTLRTVYSLAAEHDFELEDIDVDAAYLNAPQKQSCLLSYP 267
            K +  +++F+ K   DGSVARYKARLVA+G+SQV G DF ET APVA+  +LRT+ S+AA  D+E+E +DV  A+L    K+   +  P
Sbjct:  156 KIVKCRWVFRIKRHSDGSVARYKARLVAKGYSQVPGQDFSETYAPVAKYKSLRTMLSIAASRDYEIEQMDVVTAFLIPSLKEEVYMEIP 244          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18302.4482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A177TFL0_9BASI3.700e-1849.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6L2NKU3_TANCI4.820e-1852.38Zinc finger, CCHC-type (Fragment) n=1 Tax=Tanacetu... [more]
A0A6L2LJ48_TANCI6.320e-1850.56Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerarii... [more]
A0A5E8C1W8_9ASCO8.620e-1849.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A427Y2R1_9TREE9.310e-1848.28Integrase catalytic domain-containing protein n=1 ... [more]
A0A427YXG2_9TREE9.390e-1848.28Uncharacterized protein n=1 Tax=Saitozyma podzolic... [more]
A0A427YVD8_9TREE9.450e-1848.28Uncharacterized protein n=12 Tax=Saitozyma podzoli... [more]
A0A409WYT1_9AGAR9.480e-1857.53Uncharacterized protein n=1 Tax=Gymnopilus dilepis... [more]
A0A5N6Q4G6_9ASTR1.470e-1748.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A075B0S6_ROZAC1.640e-1749.44Reverse transcriptase, RNA-dependent DNA polymeras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18302contigH-paniculata_contig18302:4852..5118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score86.7
Seed ortholog evalue6.1e-15
Seed eggNOG ortholog4558.Sb0010s005460.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929422.8573499-CDS-H-paniculata_contig18302:4851..51181622929422.8573499-CDS-H-paniculata_contig18302:4851..5118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18302 4852..5118 +
1691480854.6383898-CDS-H-paniculata_contig18302:4851..51181691480854.6383898-CDS-H-paniculata_contig18302:4851..5118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18302 4852..5118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18302.4482.1prot_H-paniculata_contig18302.4482.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18302 4852..5118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18302.4482.1

>prot_H-paniculata_contig18302.4482.1 ID=prot_H-paniculata_contig18302.4482.1|Name=mRNA_H-paniculata_contig18302.4482.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
KAICTKYIFKRKLKEDGSVARYKARLVAQGFSQVGGGDFFETSAPVARTS
TLRTVYSLAAEHDFELEDIDVDAAYLNAPQKQSCLLSYP
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mRNA from alignment at H-paniculata_contig18302:4852..5118+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18302.4482.1 ID=mRNA_H-paniculata_contig18302.4482.1|Name=mRNA_H-paniculata_contig18302.4482.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at H-paniculata_contig18302:4852..5118+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGCGATTTGTACGAAATATATTTTCAAGCGGAAACTGAAGGAGGACGG CAGCGTGGCACGCTACAAAGCGCGACTGGTGGCTCAAGGCTTTTCACAGG TGGGGGGCGGAGATTTCTTTGAAACCAGTGCCCCCGTAGCTCGCACGTCG ACGTTACGTACTGTTTATAGCCTGGCCGCGGAACATGATTTCGAATTAGA AGACATAGACGTGGATGCGGCGTATTTGAACGCCCCGCAGAAGCAGAGCT GTTTGTTAAGCTACCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig18302:4852..5118+

>mRNA_H-paniculata_contig18302.4482.1 ID=mRNA_H-paniculata_contig18302.4482.1|Name=mRNA_H-paniculata_contig18302.4482.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig18302:4852..5118+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGCGATTTGTACGAAATATATTTTCAAGCGGAAACTGAAGGAGGACGG
CAGCGTGGCACGCTACAAAGCGCGACTGGTGGCTCAAGGCTTTTCACAGG
TGGGGGGCGGAGATTTCTTTGAAACCAGTGCCCCCGTAGCTCGCACGTCG
ACGTTACGTACTGTTTATAGCCTGGCCGCGGAACATGATTTCGAATTAGA
AGACATAGACGTGGATGCGGCGTATTTGAACGCCCCGCAGAAGCAGAGCT
GTTTGTTAAGCTACCCCAAAGCGATTTGTACGAAATATATTTTCAAGCGG
AAACTGAAGGAGGACGGCAGCGTGGCACGCTACAAAGCGCGACTGGTGGC
TCAAGGCTTTTCACAGGTGGGGGGCGGAGATTTCTTTGAAACCAGTGCCC
CCGTAGCTCGCACGTCGACGTTACGTACTGTTTATAGCCTGGCCGCGGAA
CATGATTTCGAATTAGAAGACATAGACGTGGATGCGGCGTATTTGAACGC
CCCGCAGAAGCAGAGCTGTTTGTTAAGCTACCCC
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