mRNA_H-paniculata_contig183.4480.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig183.4480.1
Unique NamemRNA_H-paniculata_contig183.4480.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig183.4480.1 vs. uniprot
Match: D7FIZ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ6_ECTSI)

HSP 1 Score: 375 bits (962), Expect = 1.700e-116
Identity = 230/453 (50.77%), Postives = 285/453 (62.91%), Query Frame = 1
Query:  595 NPWLSQNWGLLVMAGAAVGTIIVSAGTQVESS--ARPNHFPPVAHQTLFSV--NSGVSAVAMPPSAASYRNQGRSRVAAALGALGRHRTLQENGEVLDKPVVEYETQLELFMCNPTLVTEGNDAYIVGTAELANALSRVHGLKQVDASEITVSISTAPSDDTEAFYKCEDIGMLQWHASIKYPAATAESLDTTCALMAAQANDYVAYSKDEFKELLTGYINDEYATSTDSENVELVPSDIVAPVVGWIVTF-SEEGTTTQTASDVNSNGIAAGIEGDYVMWSWWVWLLYLXXXTCXLFPXXXXXXXXXXXXXXXXXXXXXXPDTTREGRKEEGLKKIRGPEWGITELDFEEDYKNYQSPEMKQEYVGANKGIQSTGYRAS-RPGHQSISDTAWMQQAGKKSEWAQPSPSSPSSGSGTSPTRVRRFDIDED-ADGSVGRLREKHPKYSFDMNAG 1932
            NPW+++NWGL++ A A V T+  S GT   +S          V  Q+L++   + G  +VA     +S R  GR               LQE    +  P+VEY T+L++FMCNP+L  EGNDA++V  A LA ALS + G+KQ D  +ITV+I T P D  +  Y C+  GMLQWHA ++Y AA A S DTT A++AAQANDYVAYS  +FK LL G+IN EYA     E VEL   DI+ P VGWIVTF +EE  T +T +  +S+G+A GI  D  +W+WWVWL+Y     CX   XXXXXXXXX                TR+GR EEGL KIRGPEWGITELDFE DY  YQS EMK+EY GA +G++ T YR S R G QS+S  AWMQ+AGKKS WAQPS +S   G G SP  VRRFDID+D AD  VG+LR KHP+YSFD+  G
Sbjct:   12 NPWVARNWGLVIAAAATVATVAFSLGTTASTSRSGAMTGSARVGQQSLYASPKSRGGISVAQAQRPSSVRPHGR--------------VLQEETPTVITPIVEYGTKLQIFMCNPSLEVEGNDAHLVDEASLAAALSNISGIKQADEGDITVTIKTEPVDVDDVSYMCDTDGMLQWHAQVEYSAAYAGSRDTTPAVLAAQANDYVAYSSSQFKALLAGFINAEYAGEV--ETVELSADDILIPTVGWIVTFPAEESVTQETHTAGSSDGLAMGIGSDSSLWAWWVWLIYALLVACXXXXXXXXXXXXXADEKEAARDRLI---ATRKGRGEEGLAKIRGPEWGITELDFEGDYDAYQSQEMKREYDGAGRGVEPTAYRPSHRAGQQSVSAQAWMQEAGKKSAWAQPSGNSSRQGGGQSPV-VRRFDIDDDDADDGVGKLRSKHPQYSFDVGRG 444          
BLAST of mRNA_H-paniculata_contig183.4480.1 vs. uniprot
Match: A0A835YQ53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ53_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.490e-14
Identity = 90/345 (26.09%), Postives = 137/345 (39.71%), Query Frame = 1
Query:  886 VEYETQLELFMCNPTLVTEGNDAYIVGTAELANALSRVHGLKQVDASEITVSISTAPSDDTEAFYKCEDIGMLQWHASIKY----------PAATAESLDTTCAL-----------MAAQANDYVAYS--KDEFKELLTGYINDEYATSTDSENVE---LVPSDIVAPVVGWIVTFSEEGTTTQTASDVNSNG--IAAGIEGDYVMWSWWVWLLYLXXXTCXLFPXXXXXXXXXXXXXXXXXXXXXXPDTTREG------RKEEGLKKIRGPEWGITELDFEEDYKNYQSPEMKQEYVGANKGIQSTGYRASRPGHQ----------SISDTAWMQQAGKKSEWA 1788
            + YE Q  +F+C        ++   V  + + +A+  +    +     ++V  +T       A YKC   G  QW  S+ Y           A    + +TT +             A++AND+V YS   +   +  T +    YA    +  +    +  SD+     GWI  FS    +    S   S    ++ GI G+ V W  W W+L+         P                       +   EG      RKEEGL+KI G E+GIT LDF+ +Y +Y+ P+M+ EY GA     S   RAS  GH+           +S TAW  + GKKS +A
Sbjct:  115 ISYEAQFNMFICPTQAGVANSNVKAVTESHVRDAVLSLDAFGKPSLDAVSVGFTTY-----RAPYKCAIAGSTQWSVSVVYRDPSYYRRHLTAVATTATNTTLSAGYVDPSSNAVTRASEANDWVTYSFPNNSTADFRTAF----YAAVAAAAGLPAGAITYSDLQVQSSGWIARFSSSEGSVPPGSLAFSTPTMMSVGIAGNEV-WPAWAWVLFALAVLACALPLCMFILKKRAAEF----------EEEEEGYGLLKLRKEEGLEKIHGNEFGITNLDFDGNYNDYEEPKMQDEYAGATAAAAS---RASH-GHKRMDSAGTSTVDVSATAWSNEKGKKSNFA 435          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig183.4480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIZ6_ECTSI1.700e-11650.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YQ53_9STRA3.490e-1426.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig183contigH-paniculata_contig183:38241..43989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_005010.1
Exons5
Model size3017
Cds size1458
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929422.2789376-UTR-H-paniculata_contig183:38240..392651622929422.2789376-UTR-H-paniculata_contig183:38240..39265Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig183 38241..39265 -
1691480854.4700036-UTR-H-paniculata_contig183:38240..392651691480854.4700036-UTR-H-paniculata_contig183:38240..39265Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig183 38241..39265 -
1622929422.6207428-UTR-H-paniculata_contig183:43455..439891622929422.6207428-UTR-H-paniculata_contig183:43455..43989Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig183 43456..43989 -
1691480854.5169969-UTR-H-paniculata_contig183:43455..439891691480854.5169969-UTR-H-paniculata_contig183:43455..43989Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig183 43456..43989 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929422.2918382-CDS-H-paniculata_contig183:39265..394931622929422.2918382-CDS-H-paniculata_contig183:39265..39493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig183 39266..39493 -
1691480854.4790561-CDS-H-paniculata_contig183:39265..394931691480854.4790561-CDS-H-paniculata_contig183:39265..39493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig183 39266..39493 -
1622929422.3114822-CDS-H-paniculata_contig183:39924..401891622929422.3114822-CDS-H-paniculata_contig183:39924..40189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig183 39925..40189 -
1691480854.4866498-CDS-H-paniculata_contig183:39924..401891691480854.4866498-CDS-H-paniculata_contig183:39924..40189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig183 39925..40189 -
1622929422.324786-CDS-H-paniculata_contig183:40861..411091622929422.324786-CDS-H-paniculata_contig183:40861..41109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig183 40862..41109 -
1691480854.4944756-CDS-H-paniculata_contig183:40861..411091691480854.4944756-CDS-H-paniculata_contig183:40861..41109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig183 40862..41109 -
1622929422.3358686-CDS-H-paniculata_contig183:42134..423711622929422.3358686-CDS-H-paniculata_contig183:42134..42371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig183 42135..42371 -
1691480854.5020027-CDS-H-paniculata_contig183:42134..423711691480854.5020027-CDS-H-paniculata_contig183:42134..42371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig183 42135..42371 -
1622929422.353286-CDS-H-paniculata_contig183:42975..434551622929422.353286-CDS-H-paniculata_contig183:42975..43455Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig183 42976..43455 -
1691480854.509411-CDS-H-paniculata_contig183:42975..434551691480854.509411-CDS-H-paniculata_contig183:42975..43455Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig183 42976..43455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig183.4480.1prot_H-paniculata_contig183.4480.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig183 39266..43455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig183.4480.1

>prot_H-paniculata_contig183.4480.1 ID=prot_H-paniculata_contig183.4480.1|Name=mRNA_H-paniculata_contig183.4480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=486bp
MFAQHEPDRLKPEPHDQQRGNPWLSQNWGLLVMAGAAVGTIIVSAGTQVE
SSARPNHFPPVAHQTLFSVNSGVSAVAMPPSAASYRNQGRSRVAAALGAL
GRHRTLQENGEVLDKPVVEYETQLELFMCNPTLVTEGNDAYIVGTAELAN
ALSRVHGLKQVDASEITVSISTAPSDDTEAFYKCEDIGMLQWHASIKYPA
ATAESLDTTCALMAAQANDYVAYSKDEFKELLTGYINDEYATSTDSENVE
LVPSDIVAPVVGWIVTFSEEGTTTQTASDVNSNGIAAGIEGDYVMWSWWV
WLLYLLLVTCCLFPLCCVIFERRNDEDKIAPQQQQQPDTTREGRKEEGLK
KIRGPEWGITELDFEEDYKNYQSPEMKQEYVGANKGIQSTGYRASRPGHQ
SISDTAWMQQAGKKSEWAQPSPSSPSSGSGTSPTRVRRFDIDEDADGSVG
RLREKHPKYSFDMNAGRRAGAGGARVGASTNETKL*
back to top

mRNA from alignment at H-paniculata_contig183:38241..43989-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig183.4480.1 ID=mRNA_H-paniculata_contig183.4480.1|Name=mRNA_H-paniculata_contig183.4480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5749bp|location=Sequence derived from alignment at H-paniculata_contig183:38241..43989- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTGATTACCCCGAAATATCGGTCGACTGATCATCACCCCACCCAAACT CCCAAAACCTCCCTACCCGACACAACACAACCAACTTTCGAGGGACTCTG AGATACAAGAACGAGGGATAGCGCCGCCTGCCCCCATATCCTTCTACACT TCTGCATTATTCACTCCTCCTACCCATCGCTGCTCTCCTTCCCAACTTGT TTGGACCTGACTCGCTCTGTGTGTGTAATCACCACCTGCTATCTTCAACA GACTGCCGCTGAGAGGACGAAATACCTGACACACGCATCTCTCATCTCCA TCAGGGGCCTGCCTACCTCTGGTACCACTGCCACCACATCACCATCAAAT AAGAGGCTAGTCCCTTGAGACCTCTCTATCTCTCAGAGGGCACAACCAGA GCTAGCGGACACCGTGTTGCTGCCTAGAAGTGGGACCAACAGCACTGCTG ACAACAGAGTGAGTTGTAGCATACAGCGGTTCGTACTGCAGTTTCGCGGG GTCCCTATCTTCACGCTCTACCACGAGCTCAGCCATGTTCGCGCAACATG AACCCGACCGACTGAAGCCGGAGCCGCACGACCAACAGAGAGGGAACCCC TGGCTATCTCAAAACTGGGGTCTTCTTGTCATGGCCGGGGCTGCCGTCGG CACGATCATCGTCTCTGCCGGAACACAAGTGGAATCATCGGCACGACCAA ATCACTTCCCCCCTGTCGCACACCAGACACTCTTTTCTGTCAACAGTGGT GTATCTGCCGTAGCGATGCCTCCGTCGGCAGCGTCGTACCGGAACCAGGG CAGATCCAGGGTCGCGGCGGCCCTTGGGGCGCTAGGCAGGCACCGTACGC TTCAAGAAAACGGAGAAGTCTTGGACAAGCCTGTCGTGGAGTACGAGACC CAGTTGGAGTTATTCATGTGTAATCCTACTCTTGTGACTGAGGGGAACGA CGCATACATCGTTGGGACTGCTGAGTTGGCCAATGCTCTCAGTAGGGTGC ATGGCCTCAAGCAGGTGAGAAAGGAGAGAAGAAAGGCTGTTTATTTGGCT GAGGATAGGAGCCTTCTTGTCTTGTTCAGATCCAGGAGGATTGAAGGATG CCCTGTCTAGTTATATTATATGCCATCGATTTTGAACTACAAGTGACTCG GCTAGATTTGATTGAAATTTTGAATCTTGCGTATGTTCTTGGAAAAGTGT TGTGGGCGTCACCGATATCATCAAAGCTTGCAGGCTTATGTACGAAGGGA GCGTTGTCGAATACAGCAGCCAGCACCCGTCCGTTCATACGAAAGTCCCG TTTTAAGCGTGGATCCGATATATTCATGCAGCCTCATCTGAATCTGTCTC TTTCGTGTGGGGAAATTTAGGAATTCATATGGGGTCACCAGTTTTGAAAT TGCACGTATATGCAACTCGTATTTCTTACTTTGTCTCGGTAATTCTCTGT TCCACGCGTTCACTAGCCGCACGTGAACGGTTCAGTGCACCTTCGCGACG TATCGCCTCGGTACTCTACTAACGTGCATTCCCTACATATATACGTTGTA TACCTTTCCTTGCCCATGTTCCCCTCTTTTTTGGTGTCTCGTTCTTGGAA ACATGCTTCCTGTTGCAGGTTGATGCCAGCGAGATTACAGTAAGCATCTC TACTGCACCGTCTGACGACACCGAGGCGTTTTACAAATGCGAAGATATTG GTATGCTCCAGTGGCACGCGAGTATCAAATATCCCGCGGCAACAGCGGAG TCGCTGGACACTACTTGCGCACTGATGGCGGCGCAAGCGAACGACTACGT CGCCTACTCAAAGGATGAGTTCAAGGAGTTGTTGACTGGATACATAAATG ATGAGGTACTGTACACCCCAAACGCGGTCGTGTCGAAGGGTGTGGTGATG CAGTATCAGCCACCTAATAACAAATTTGAACGAAATATAAAACAGAGAGT CAACGCCATCTCCTATAGGGCCGAAAAAACACACTGGAAACGTTTGTTTT TTTTTGTATTCAAGATTTTCGATTCCTTATCTCCCTCTCATTTCATCAAC ATAATCAATTTTCTTGGAATTCAACGAGATACGCGGGCGTTACTCTACTT TCCTCCCAGAAGGTTGATGTTTCATAGGACAGTGGGACACCCACGTTGAT CGCAGATGCCACCAGCACATACATAATCCAATGTGTAAGCCCGGCCGCCC TGTGGCAAGTCCGGAGGAATGACAGATGTTTATTACGTCGGCGCTTGGTG TTGTGGTGGCGGCCGTTGAAAACATGAAGAGGACAGGTGCATTGAACTGC TGGGTGCAGGGGCGTTTCTGTAGAATGACCCAATGTGCCTTGCACACACC CAAACTAAACCCTTGAACCCTTCGTTCCTCCAAACCCATCCCACTCATGG GTTCGTCTTGACTTGCATTAGAGTGGATGGTACATTCGTGGTGGTCCAGC CTCAAAGATGAGGACGTGTTGTGTGCTCGACGAGGCCTGGTGTGTTTGAA ATTTCCATGAACAAACCGCATTTTAGTTTTTTTAACCTGTAAAGCTAGGA ACCAATTTTTCATAGTCAGACTTTTGCACAGGGAAAAATAGCAATTTATG TTTTTCGATTGGAGATGGCATAATTTTGATAAGATGTATTTATGTATTTT TTCGTGGAGGGGGACGACAAATCAAGGTCAAAATCTAGTCGCACAGTAAC TCCTGGGTGAGGTATACCGCGTGCTTAGCGGTGCCTGGTGTCAAGCTTGC CGCATGTGATGAGATGAGAGGCCATCGGCATGAAGAACCCCAGGAACAAA ATACATTGCTGACCTTTGCCTATTCCCTTCCAAGCTTTACTTTGTTCTAT GCCCACACGTCACCCCGTTGTTCCCCACAGTACGCCACAAGCACGGACTC GGAAAATGTGGAGCTGGTTCCCAGTGACATCGTGGCGCCGGTCGTAGGTT GGATTGTAACCTTCTCCGAGGAGGGAACGACTACCCAAACAGCGAGCGAC GTCAATTCCAATGGCATTGCGGCGGGGATCGAGGGTGATTATGTGATGTG GTCTTGGTGGGTGTGGCTGCTCTACCTGCTCCTGGTTACGTGCTGCCTGT TTCCCCTCTGCTGTGTCATCTTCGAGAGGTGATTGTCGGCTACAATGGCT TTGTTGGTCCCAGCTGCTAAACACCACCGCCTTCCGAAATTTAACGTAAA CGCTGAGACCTGATCCCTTGTCGCGAGTAGTTGCCTCCAGAATACACAGC GTACCTTTCAGAGCGAACGCGCATCACAAGTTTTCATATTCAAAAGATTT TCGGTTTTCGACATGTCTGAAATTATTAACTTGAGTCCGTTCTAAACATT GGGAGGCTTTTTTCTCTCTTTTCTCGCTGTTCCATACTTGTTCGGTCGGG AGAAGTGGAAACTAACCACTTCATTTCTGATGTCGAGTGCAGCTATTTCG CTTTTGTACTCATGGTGCATAGACAGATAGCCGACAAGAACTGACACGAA GAACAGGCAATGAACAACGATCAGCGCTGGTCATGGAACACACCTACAGT TATGGAAACGTCCCAGAAGCCAGACTCAAGCTGACGAAGCTCGAGCGCAC GTGTTGGGTAACAGGCAGTGGAGAAACCTGCTTGGCAACGTTTTTTCCCT CTTCTGCGCTCTTGGGTGTGCGCTGACGGCCTGAATTTCACACGCAATTT GTGGTGTGGTGTTCCTCGCATCTCTGTCCTTTGTGTTGCCGAACACGTCC TCCTCCTTTTTTCACGTCGCATCTTTTGGGTGAATCCATTTGGAGAATAG GCGCAACGACGAAGACAAGATCGCCCCCCAGCAGCAGCAGCAGCCCGACA CCACCAGAGAGGGTCGCAAGGAAGAAGGCCTGAAGAAGATTCGCGGCCCG GAGTGGGGTATCACCGAGTTGGACTTTGAAGAGGACTACAAAAACTATCA ATCACCAGAGATGAAACAAGAGTACGTAGGCGCTAACAAGGGTATTCAGT CAACAGGGTACCGCGCTTCGCGACCTGGACATCAGAGCATCAGCGATACT GCCTGGATGCAACAGGTGAGAAAATCAGGCAGGACGCGTATGTCCGCGTG TATGGTGGACTGATCCCCGAGATACACTGTTGGTGCTTGGCTTTCCATAG GGTGATGTGTAGGGTGTATGGCGGACTGCTACCTCCCGTCGCCATATCAC CAAAACGAGGTCACTAGCCGCTATTTATCACATTTCGTTCTATTGGAGTA TGGATATACAGATGCCCCCCTCTACTTCAAAAAGAGACTCGAACACAGAA GTAATCCCTATTTGGCGACTAGTTCAGCACAATTTCTTGGATATTCTTCA AATGTTGTTGAAAAATTGAGCCACCCACAAATTGCTTTTCATTGGTTTCT TGTTACCGGGTCTTTTTTCGTAGACATGAAACAAGCGGAAGGTTCGTGAC GCACCCTCTTTTTGCTGCCCGATCGACTGACTGCAAAAACTAACAGGCGG GTAAGAAGTCGGAATGGGCTCAACCGTCACCGAGCAGCCCCTCGAGCGGA TCAGGGACTTCGCCCACCCGAGTGCGGCGGTTTGATATTGACGAAGATGC GGATGGCAGCGTCGGCAGATTGAGAGAGAAGCACCCCAAGTACAGCTTCG ACATGAATGCTGGCAGACGCGCGGGTGCTGGGGGGGCAAGGGTGGGCGCG TCTACAAATGAAACCAAATTGTAACCTGGGTTAATTACATTGGCGTCAAG TCTTTTTTTGTTTTCTTTGTAGAGATGATGGTAATAATTGTAACTCGATG TGAAGGGAACACGTCTCGTTTGCTCTCAATGTAGTAGTAGGTAAAGCTTT CTGAGCTACACTAGTTGTTTATTTCTTGGGGAAGAGGGGCGTTTACTGTC AGCTCCTTGTTTTTGAACATATGTTCCCTTTTTTATTGGATGGAAATCCT ATGACGGGATATTTGTGTCTTCCTCTTTGGGTCCCCTTAGTGGACCTGAT CGGAAGAGGTACCATACGTCGAGAGAGGAGGTCGAGAGGGTTAGCATGGT ACTTTTCCCTTGGGTGAAAGTGCTCTATTTTGTAAATCGCGTGATAAAAG TGGTGGGAGTGTGAATCAGGTGTTCGTGTGCGTGTCACTTGAAGGGGTTT TTTGAGTTGCTACGGTGGTAACGCTGCCTTCGATGTATCGAGAATTTAGA GTACGTTGTGCTGCTGTATACGTGAGTATTGCCCTTGTGGCAACAGAGTA AAGAGCCTGTCGAATGTTGCAGACGCAAAGAGTTGCAAACGCGAAGAATA TTAGAGGTTACATGCAAGAACAAAAACAAAAACCTCTAAAAAGTTTCAGT GTGCCATGGATAGCAGCATATTAGGATATTAACCCACGGCGACCGTAGAG TTGATTCAGCTGACAGACTGCGGCACACGCTGGTTTGAGCTGTGGCAAAA GAGGTGAACAAGAGTGCGGCAGAGTACGGTGAAGGTGTCGTGTATGGCGA TGGGTCATGCACCATGTCTTTTCTATCTGCAATAATTTTTTATTGACACA AAGTCTTGGCTGCGTCAAACCGGCCTTTTTTTATCTTTGGGAAGGCATTC TTCTCTTCAGTCTGGACTCATCAGGTTGGTTCCATGCACAGTTGCCGAGA GAACTTGAAGCAATTGTTCGGTAATTGGTATATTCATCGGAGCTGTAAAT TCTGGGCAAATGTTACATTGGTACATATAGTATCCGATATGATATTACC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig183:38241..43989-

>mRNA_H-paniculata_contig183.4480.1 ID=mRNA_H-paniculata_contig183.4480.1|Name=mRNA_H-paniculata_contig183.4480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2916bp|location=Sequence derived from alignment at H-paniculata_contig183:38241..43989- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCGCGCAACATGAACCCGACCGACTGAAGCCGGAGCCGCACGACCA
ACAGAGAGGGAACCCCTGGCTATCTCAAAACTGGGGTCTTCTTGTCATGG
CCGGGGCTGCCGTCGGCACGATCATCGTCTCTGCCGGAACACAAGTGGAA
TCATCGGCACGACCAAATCACTTCCCCCCTGTCGCACACCAGACACTCTT
TTCTGTCAACAGTGGTGTATCTGCCGTAGCGATGCCTCCGTCGGCAGCGT
CGTACCGGAACCAGGGCAGATCCAGGGTCGCGGCGGCCCTTGGGGCGCTA
GGCAGGCACCGTACGCTTCAAGAAAACGGAGAAGTCTTGGACAAGCCTGT
CGTGGAGTACGAGACCCAGTTGGAGTTATTCATGTGTAATCCTACTCTTG
TGACTGAGGGGAACGACGCATACATCGTTGGGACTGCTGAGTTGGCCAAT
GCTCTCAGTAGGGTGCATGGCCTCAAGCAGATGTTCGCGCAACATGAACC
CGACCGACTGAAGCCGGAGCCGCACGACCAACAGAGAGGGAACCCCTGGC
TATCTCAAAACTGGGGTCTTCTTGTCATGGCCGGGGCTGCCGTCGGCACG
ATCATCGTCTCTGCCGGAACACAAGTGGAATCATCGGCACGACCAAATCA
CTTCCCCCCTGTCGCACACCAGACACTCTTTTCTGTCAACAGTGGTGTAT
CTGCCGTAGCGATGCCTCCGTCGGCAGCGTCGTACCGGAACCAGGGCAGA
TCCAGGGTCGCGGCGGCCCTTGGGGCGCTAGGCAGGCACCGTACGCTTCA
AGAAAACGGAGAAGTCTTGGACAAGCCTGTCGTGGAGTACGAGACCCAGT
TGGAGTTATTCATGTGTAATCCTACTCTTGTGACTGAGGGGAACGACGCA
TACATCGTTGGGACTGCTGAGTTGGCCAATGCTCTCAGTAGGGTGCATGG
CCTCAAGCAGGTTGATGCCAGCGAGATTACAGTAAGCATCTCTACTGCAC
CGTCTGACGACACCGAGGCGTTTTACAAATGCGAAGATATTGGTATGCTC
CAGTGGCACGCGAGTATCAAATATCCCGCGGCAACAGCGGAGTCGCTGGA
CACTACTTGCGCACTGATGGCGGCGCAAGCGAACGACTACGTCGCCTACT
CAAAGGATGAGTTCAAGGAGTTGTTGACTGGATACATAAATGATGAGGTT
GATGCCAGCGAGATTACAGTAAGCATCTCTACTGCACCGTCTGACGACAC
CGAGGCGTTTTACAAATGCGAAGATATTGGTATGCTCCAGTGGCACGCGA
GTATCAAATATCCCGCGGCAACAGCGGAGTCGCTGGACACTACTTGCGCA
CTGATGGCGGCGCAAGCGAACGACTACGTCGCCTACTCAAAGGATGAGTT
CAAGGAGTTGTTGACTGGATACATAAATGATGAGTACGCCACAAGCACGG
ACTCGGAAAATGTGGAGCTGGTTCCCAGTGACATCGTGGCGCCGGTCGTA
GGTTGGATTGTAACCTTCTCCGAGGAGGGAACGACTACCCAAACAGCGAG
CGACGTCAATTCCAATGGCATTGCGGCGGGGATCGAGGGTGATTATGTGA
TGTGGTCTTGGTGGGTGTGGCTGCTCTACCTGCTCCTGGTTACGTGCTGC
CTGTTTCCCCTCTGCTGTGTCATCTTCGAGAGTACGCCACAAGCACGGAC
TCGGAAAATGTGGAGCTGGTTCCCAGTGACATCGTGGCGCCGGTCGTAGG
TTGGATTGTAACCTTCTCCGAGGAGGGAACGACTACCCAAACAGCGAGCG
ACGTCAATTCCAATGGCATTGCGGCGGGGATCGAGGGTGATTATGTGATG
TGGTCTTGGTGGGTGTGGCTGCTCTACCTGCTCCTGGTTACGTGCTGCCT
GTTTCCCCTCTGCTGTGTCATCTTCGAGAGGCGCAACGACGAAGACAAGA
TCGCCCCCCAGCAGCAGCAGCAGCCCGACACCACCAGAGAGGGTCGCAAG
GAAGAAGGCCTGAAGAAGATTCGCGGCCCGGAGTGGGGTATCACCGAGTT
GGACTTTGAAGAGGACTACAAAAACTATCAATCACCAGAGATGAAACAAG
AGTACGTAGGCGCTAACAAGGGTATTCAGTCAACAGGGTACCGCGCTTCG
CGACCTGGACATCAGAGCATCAGCGATACTGCCTGGATGCAACAGGCGCA
ACGACGAAGACAAGATCGCCCCCCAGCAGCAGCAGCAGCCCGACACCACC
AGAGAGGGTCGCAAGGAAGAAGGCCTGAAGAAGATTCGCGGCCCGGAGTG
GGGTATCACCGAGTTGGACTTTGAAGAGGACTACAAAAACTATCAATCAC
CAGAGATGAAACAAGAGTACGTAGGCGCTAACAAGGGTATTCAGTCAACA
GGGTACCGCGCTTCGCGACCTGGACATCAGAGCATCAGCGATACTGCCTG
GATGCAACAGGCGGGTAAGAAGTCGGAATGGGCTCAACCGTCACCGAGCA
GCCCCTCGAGCGGATCAGGGACTTCGCCCACCCGAGTGCGGCGGTTTGAT
ATTGACGAAGATGCGGATGGCAGCGTCGGCAGATTGAGAGAGAAGCACCC
CAAGTACAGCTTCGACATGAATGCTGGCAGACGCGCGGGTGCTGGGGGGG
CAAGGGTGGGCGCGTCTACAAATGAAACCAAATTGTAAGCGGGTAAGAAG
TCGGAATGGGCTCAACCGTCACCGAGCAGCCCCTCGAGCGGATCAGGGAC
TTCGCCCACCCGAGTGCGGCGGTTTGATATTGACGAAGATGCGGATGGCA
GCGTCGGCAGATTGAGAGAGAAGCACCCCAAGTACAGCTTCGACATGAAT
GCTGGCAGACGCGCGGGTGCTGGGGGGGCAAGGGTGGGCGCGTCTACAAA
TGAAACCAAATTGTAA
back to top