mRNA_H-paniculata_contig18295.4475.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18295.4475.1
Unique NamemRNA_H-paniculata_contig18295.4475.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18295.4475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18295contigH-paniculata_contig18295:2063..2305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size233
Cds size165
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18295.4475.1prot_H-paniculata_contig18295.4475.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18295 2063..2237 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929420.7165296-CDS-H-paniculata_contig18295:2062..21271622929420.7165296-CDS-H-paniculata_contig18295:2062..2127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18295 2063..2127 +
1691480853.9270208-CDS-H-paniculata_contig18295:2062..21271691480853.9270208-CDS-H-paniculata_contig18295:2062..2127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18295 2063..2127 +
1622929420.7295988-CDS-H-paniculata_contig18295:2137..22371622929420.7295988-CDS-H-paniculata_contig18295:2137..2237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18295 2138..2237 +
1691480853.9356232-CDS-H-paniculata_contig18295:2137..22371691480853.9356232-CDS-H-paniculata_contig18295:2137..2237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18295 2138..2237 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929420.7432754-UTR-H-paniculata_contig18295:2237..23051622929420.7432754-UTR-H-paniculata_contig18295:2237..2305Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18295 2238..2305 +
1691480853.945295-UTR-H-paniculata_contig18295:2237..23051691480853.945295-UTR-H-paniculata_contig18295:2237..2305Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18295 2238..2305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18295.4475.1

>prot_H-paniculata_contig18295.4475.1 ID=prot_H-paniculata_contig18295.4475.1|Name=mRNA_H-paniculata_contig18295.4475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
MSPFFPQSGIKNNITKIYSKSHSNENESGGERSSSIISNDHHCSQQYIRC
DITG*
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mRNA from alignment at H-paniculata_contig18295:2063..2305+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18295.4475.1 ID=mRNA_H-paniculata_contig18295.4475.1|Name=mRNA_H-paniculata_contig18295.4475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=243bp|location=Sequence derived from alignment at H-paniculata_contig18295:2063..2305+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCACCCTTTTTTCCTCAGTCAGGGATCAAGAATAATATTACAAAAAT
ATACAGTAAGTCACAGCAGCAACAGCAGCAACGAGAATGAAAGTGGGGGG
GAGAGAAGTAGCTCAATCATTTCCAACGATCACCACTGCAGTCAACAATA
TATTCGTTGCGATATTACTGGCTAACAATTAATTCCAATTGCATGTGAGA
ATCCAACCGCCATTTTTATTCTTTTGGAATAAGAAGCTCCGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig18295:2063..2305+

>mRNA_H-paniculata_contig18295.4475.1 ID=mRNA_H-paniculata_contig18295.4475.1|Name=mRNA_H-paniculata_contig18295.4475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig18295:2063..2305+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCACCCTTTTTTCCTCAGTCAGGGATCAAGAATAATATTACAAAAAT
ATACAGTAAGTCACAATGTCACCCTTTTTTCCTCAGTCAGGGATCAAGAA
TAATATTACAAAAATATACAGTAAGTCACACAGCAACGAGAATGAAAGTG
GGGGGGAGAGAAGTAGCTCAATCATTTCCAACGATCACCACTGCAGTCAA
CAATATATTCGTTGCGATATTACTGGCTAACAGCAACGAGAATGAAAGTG
GGGGGGAGAGAAGTAGCTCAATCATTTCCAACGATCACCACTGCAGTCAA
CAATATATTCGTTGCGATATTACTGGCTAA
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