mRNA_H-paniculata_contig18293.4474.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18293.4474.1
Unique NamemRNA_H-paniculata_contig18293.4474.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18293.4474.1 vs. uniprot
Match: D8LCT9_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCT9_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 6.990e-60
Identity = 86/108 (79.63%), Postives = 97/108 (89.81%), Query Frame = 1
Query:    1 SHFWMGLLEGKKRWLLYPKQQAPLLYPLWPEGCHDPVFEADLKEPDGNKHPAALLASGYECVLEEGDLLFVPAGCPHRVENITDTIALSCNYVDATNVEGALAALEDQ 324
            SHFWM LLEGKKRWLLYPK++APLLYP+WPEGCHDPVFEADL  PD  + PAALLA G+ CVLE GDLLFVPAGCPHRVEN+T T+ALSCNYVDATN++ +LAAL+DQ
Sbjct:  248 SHFWMALLEGKKRWLLYPKEEAPLLYPIWPEGCHDPVFEADLDNPDATRTPAALLAKGFSCVLEAGDLLFVPAGCPHRVENLTGTLALSCNYVDATNIDMSLAALQDQ 355          
BLAST of mRNA_H-paniculata_contig18293.4474.1 vs. uniprot
Match: A0A835ZEW7_9STRA (JmjC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEW7_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.440e-38
Identity = 62/103 (60.19%), Postives = 76/103 (73.79%), Query Frame = 1
Query:   13 MGLLEGKKRWLLYPKQQAPLLYPLWPEGCHDPVFEADLKEPDGNKHPAALLASGYECVLEEGDLLFVPAGCPHRVENITD--TIALSCNYVDATNVEGALAAL 315
            M LL G+KRW L+P+ Q  LLYP+W EG HDP FE DLK PD  KHPAA   +G++C +E GDLLFVP+GCPH VEN      +A+SCNYVD++N+E AL AL
Sbjct:    1 MALLAGRKRWTLFPRDQLALLYPVWREGTHDPSFEVDLKLPDYRKHPAAAALTGWQCAMEAGDLLFVPSGCPHEVENEGPGPVVAVSCNYVDSSNLERALEAL 103          
BLAST of mRNA_H-paniculata_contig18293.4474.1 vs. uniprot
Match: A0A485LIU5_9STRA (Aste57867_21686 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIU5_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.220e-30
Identity = 62/111 (55.86%), Postives = 74/111 (66.67%), Query Frame = 1
Query:    1 SHFWMGLLEGKKRWLLYPKQQAPLLYPLWPEGCHDPVFEADLKEPDGN-KHPAALL--ASGYECVLEEGDLLFVPAGCPHRVENITDTIALSCNYVDATNVEGALAALEDQ 324
            S+FWM L+EG+KRW L       LLYP W  G  D VF  D+ + D + +H  AL   A  YEC+LE GD+LFVPAG PH VEN+TDT ALSCNY+DA+N   A AALE Q
Sbjct:  292 SNFWMALMEGRKRWRLIHPDDVHLLYPTWHVGTPDIVFAVDMTQDDASSRHQHALFQYARVYECILEAGDILFVPAGAPHYVENLTDTTALSCNYIDASNWARAQAALECQ 402          
BLAST of mRNA_H-paniculata_contig18293.4474.1 vs. uniprot
Match: A0A8B8CFB3_CRAVI (F-box protein At1g78280-like n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8CFB3_CRAVI)

HSP 1 Score: 121 bits (304), Expect = 4.270e-30
Identity = 54/106 (50.94%), Postives = 71/106 (66.98%), Query Frame = 1
Query:    1 SHFWMGLLEGKKRWLLYPKQQAPLLYPLWPEGCHDPVFEADLKEPDGNKHPAALLASGYECVLEEGDLLFVPAGCPHRVENITDTIALSCNYVDATNVEGALAALE 318
            S+FWM + +G KRW+ +P    P LYP +P    DP+FEADL  P+  K P   L    EC+L EG++LFVPAGCPHRVEN+T ++A+S N+VD +N E  L  LE
Sbjct:  360 SNFWMAVFKGSKRWVFFPPSDMPYLYPQFPNSM-DPIFEADLTSPNLEKQPLLHLTHPTECILTEGEVLFVPAGCPHRVENMTSSVAISANFVDLSNWENVLRELE 464          
BLAST of mRNA_H-paniculata_contig18293.4474.1 vs. uniprot
Match: A0A024US26_9STRA (JmjC domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024US26_9STRA)

HSP 1 Score: 119 bits (299), Expect = 5.280e-30
Identity = 59/109 (54.13%), Postives = 72/109 (66.06%), Query Frame = 1
Query:    1 SHFWMGLLEGKKRWLLYPKQQAPLLYPLWPEGCHDPVFEADLKEPDGN-KHPAALLASGYECVLEEGDLLFVPAGCPHRVENITDTIALSCNYVDATNVEGALAALEDQ 324
            S+FWM LLEG+KRW L       LLYP W  G  D VF  DL  P+G+ +H     A  ++CVLEEGD+LFVPAG PH V+N+T T+A+SCNY+DATN   A  AL  Q
Sbjct:  188 SNFWMALLEGRKRWCLVHPDDMHLLYPEWHAGSPDVVFGVDLARPEGSPEHALFRHARVWDCVLEEGDVLFVPAGTPHFVQNLTQTVAVSCNYIDATNWVRASTALAHQ 296          
BLAST of mRNA_H-paniculata_contig18293.4474.1 vs. uniprot
Match: K1R795_CRAGI (Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-B n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1R795_CRAGI)

HSP 1 Score: 121 bits (303), Expect = 8.230e-30
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 1
Query:    1 SHFWMGLLEGKKRWLLYPKQQAPLLYPLWPEGCHDPVFEADLKEPDGNKHPAALLASGYECVLEEGDLLFVPAGCPHRVENITDTIALSCNYVDATNVEGALAALE 318
            S+FWM + +G KRW+ +P+   P LYP +P    DPVFEAD++ P+    P   L    EC+L EG++LFVPAGCPHRVEN+T ++A+S N+VD +N +  L  LE
Sbjct:  397 SNFWMAVFQGSKRWVFFPQSDLPYLYPQYPNSM-DPVFEADIRNPNLENQPLLHLTHPSECILSEGEVLFVPAGCPHRVENLTKSVAISANFVDLSNWDNVLEELE 501          
BLAST of mRNA_H-paniculata_contig18293.4474.1 vs. uniprot
Match: A0A6G0XJY5_9STRA (JmjC domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJY5_9STRA)

HSP 1 Score: 120 bits (301), Expect = 8.480e-30
Identity = 58/108 (53.70%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 SHFWMGLLEGKKRWLLYPKQQAPLLYPLWPEGCHDPVFEADLKEPDGNKHPAALLASGYECVLEEGDLLFVPAGCPHRVENITDTIALSCNYVDATNVEGALAALEDQ 324
            S+FWM L+EG+KRWLL       LLYP W  G  D VF  DL  PD +  P    A   EC++E GD+LFVPAG PH VENITDT+A+S NY+D++N   A  ALE Q
Sbjct:  294 SNFWMALMEGRKRWLLVHPDDVHLLYPHWHPGSPDLVFSVDLARPDHSLFPLHKYARVSECIMEAGDILFVPAGTPHYVENITDTVAVSSNYIDSSNWPLAREALEQQ 401          
BLAST of mRNA_H-paniculata_contig18293.4474.1 vs. uniprot
Match: A0A6J8EX94_MYTCO (JMJD6 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8EX94_MYTCO)

HSP 1 Score: 119 bits (299), Expect = 2.410e-29
Identity = 56/112 (50.00%), Postives = 77/112 (68.75%), Query Frame = 1
Query:    1 SHFWMGLLEGKKRWLLYPKQQAPLLYPLWPEGCHDPVFEADLKEPDGNKHPAALLASGYECVLEEGDLLFVPAGCPHRVENITDTIALSCNYVDATNVEGALAALEDQVSAL 336
            S+FWM L +GKKRW+ +P+   P LYP + E   DPVF  DL +PD  ++P   L +  ECVLE GD+LFVPAGCPHRVEN+  ++A+S N+VD +N+   L   E +++AL
Sbjct:  377 SNFWMALFQGKKRWVFFPQSDVPYLYPEY-EHSLDPVFAVDLSKPDLTRYPLLQLTTPMECVLEPGDVLFVPAGCPHRVENLETSVAISSNFVDQSNLN--LVRQELKINAL 485          
BLAST of mRNA_H-paniculata_contig18293.4474.1 vs. uniprot
Match: A0A8B6GCN7_MYTGA (JmjC domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6GCN7_MYTGA)

HSP 1 Score: 118 bits (295), Expect = 8.180e-29
Identity = 56/112 (50.00%), Postives = 75/112 (66.96%), Query Frame = 1
Query:    1 SHFWMGLLEGKKRWLLYPKQQAPLLYPLWPEGCHDPVFEADLKEPDGNKHPAALLASGYECVLEEGDLLFVPAGCPHRVENITDTIALSCNYVDATNVEGALAALEDQVSAL 336
            S+FWM L +GKKRW+ +P+   P LYP + E   DPVF  DL  PD  ++P   L +  ECVLE GD+LFVPAGCPHRVEN+  ++A+S N+VD +N    L   E +++AL
Sbjct:  375 SNFWMALFQGKKRWVFFPQSDVPYLYPEY-EHSLDPVFAVDLSRPDLTQYPLLQLTTPIECVLEPGDVLFVPAGCPHRVENLETSVAISSNFVDQSNF--TLVKQELKINAL 483          
BLAST of mRNA_H-paniculata_contig18293.4474.1 vs. uniprot
Match: UPI0009E4E5F3 (bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E4E5F3)

HSP 1 Score: 118 bits (295), Expect = 8.710e-29
Identity = 53/106 (50.00%), Postives = 73/106 (68.87%), Query Frame = 1
Query:    1 SHFWMGLLEGKKRWLLYPKQQAPLLYPLWPEGCHDPVFEADLKEPDGNKHPAALLASGYECVLEEGDLLFVPAGCPHRVENITDTIALSCNYVDATNVEGALAALE 318
            S+FWM L +G+KRW  + K++ PLLYP + E   D VF+ DL  PD +KHP    A+   C+LE G+LLFVP GCPHRVEN+ D++A+S N+VD +N E  +  L+
Sbjct:  361 SNFWMALFQGRKRWTFFSKEEVPLLYPHY-EDSLDLVFDVDLSSPDFDKHPLLSRATPRRCILEPGELLFVPYGCPHRVENLEDSLAVSANFVDISNFEVVVEELK 465          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18293.4474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCT9_ECTSI6.990e-6079.63JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835ZEW7_9STRA2.440e-3860.19JmjC domain-containing protein n=1 Tax=Tribonema m... [more]
A0A485LIU5_9STRA1.220e-3055.86Aste57867_21686 protein n=1 Tax=Aphanomyces stella... [more]
A0A8B8CFB3_CRAVI4.270e-3050.94F-box protein At1g78280-like n=2 Tax=Crassostrea v... [more]
A0A024US26_9STRA5.280e-3054.13JmjC domain-containing protein n=1 Tax=Aphanomyces... [more]
K1R795_CRAGI8.230e-3049.06Bifunctional arginine demethylase and lysyl-hydrox... [more]
A0A6G0XJY5_9STRA8.480e-3053.70JmjC domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A6J8EX94_MYTCO2.410e-2950.00JMJD6 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A... [more]
A0A8B6GCN7_MYTGA8.180e-2950.00JmjC domain-containing protein n=1 Tax=Mytilus gal... [more]
UPI0009E4E5F38.710e-2950.00bifunctional arginine demethylase and lysyl-hydrox... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18293contigH-paniculata_contig18293:377..969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.4
Seed ortholog evalue7.2e-45
Seed eggNOG ortholog2880.D8LCT9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cupin-like domain
EggNOG OGsKOG2131@1,KOG2131@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size348
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18293.4474.1prot_H-paniculata_contig18293.4474.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18293 389..969 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929420.6384053-UTR-H-paniculata_contig18293:376..3881622929420.6384053-UTR-H-paniculata_contig18293:376..388Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18293 377..388 +
1691480853.8952513-UTR-H-paniculata_contig18293:376..3881691480853.8952513-UTR-H-paniculata_contig18293:376..388Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18293 377..388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929420.6615357-CDS-H-paniculata_contig18293:388..5721622929420.6615357-CDS-H-paniculata_contig18293:388..572Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18293 389..572 +
1691480853.905772-CDS-H-paniculata_contig18293:388..5721691480853.905772-CDS-H-paniculata_contig18293:388..572Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18293 389..572 +
1622929420.6759-CDS-H-paniculata_contig18293:817..9691622929420.6759-CDS-H-paniculata_contig18293:817..969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18293 818..969 +
1691480853.9144173-CDS-H-paniculata_contig18293:817..9691691480853.9144173-CDS-H-paniculata_contig18293:817..969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18293 818..969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18293.4474.1

>prot_H-paniculata_contig18293.4474.1 ID=prot_H-paniculata_contig18293.4474.1|Name=mRNA_H-paniculata_contig18293.4474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MGLLEGKKRWLLYPKQQAPLLYPLWPEGCHDPVFEADLKEPDGNKHPAAL
LASGYECVLEEGDLLFVPAGCPHRVENITDTIALSCNYVDATNVEGALAA
LEDQVSALHFA*
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mRNA from alignment at H-paniculata_contig18293:377..969+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18293.4474.1 ID=mRNA_H-paniculata_contig18293.4474.1|Name=mRNA_H-paniculata_contig18293.4474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=593bp|location=Sequence derived from alignment at H-paniculata_contig18293:377..969+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCACTTCTGGATGGGACTACTAGAGGGTAAGAAGAGGTGGCTATTGTA CCCGAAACAACAGGCCCCTCTTCTATACCCTCTTTGGCCTGAGGGTTGCC ACGATCCTGTGTTCGAAGCGGATCTGAAAGAACCGGACGGTAATAAACAC CCCGCAGCCCTGCTTGCGAGCGGATACGAATGCGTCTTAGAAGAGGGTGC GTTGGGTGCGGGCACCGTAGGAGTGTATCCACACACCTCTCTCACGGACA ACCTTGCCTAACAGTTTCTACAGATGCATCGTATCCCCATGCGAATGGCG CCTACCACCACTAGTTGCCGAGCTGTGCCGCTTGCTAGCGCGGGCGCTAT CGCTTTATCTCTTAATCGATCACGTGCCAGCCAGCCTAGTCCCTGACTCT TATCGTCCCGCGTGAATTTTTCCGGTGCTTCATACGAATAGGAGATCTTT TGTTTGTTCCAGCTGGTTGCCCTCATCGTGTGGAAAATATTACCGATACC ATCGCTCTGTCGTGCAACTATGTGGACGCTACCAACGTAGAGGGGGCCTT AGCCGCGCTTGAGGATCAGGTGAGTGCCCTACACTTTGCCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig18293:377..969+

>mRNA_H-paniculata_contig18293.4474.1 ID=mRNA_H-paniculata_contig18293.4474.1|Name=mRNA_H-paniculata_contig18293.4474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig18293:377..969+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGACTACTAGAGGGTAAGAAGAGGTGGCTATTGTACCCGAAACAACA
GGCCCCTCTTCTATACCCTCTTTGGCCTGAGGGTTGCCACGATCCTGTGT
TCGAAGCGGATCTGAAAGAACCGGACGGTAATAAACACCCCGCAGCCCTG
CTTGCGAGCGGATACGAATGCGTCTTAGAAGAGGATGGGACTACTAGAGG
GTAAGAAGAGGTGGCTATTGTACCCGAAACAACAGGCCCCTCTTCTATAC
CCTCTTTGGCCTGAGGGTTGCCACGATCCTGTGTTCGAAGCGGATCTGAA
AGAACCGGACGGTAATAAACACCCCGCAGCCCTGCTTGCGAGCGGATACG
AATGCGTCTTAGAAGAGGGAGATCTTTTGTTTGTTCCAGCTGGTTGCCCT
CATCGTGTGGAAAATATTACCGATACCATCGCTCTGTCGTGCAACTATGT
GGACGCTACCAACGTAGAGGGGGCCTTAGCCGCGCTTGAGGATCAGGTGA
GTGCCCTACACTTTGCCTGAGAGATCTTTTGTTTGTTCCAGCTGGTTGCC
CTCATCGTGTGGAAAATATTACCGATACCATCGCTCTGTCGTGCAACTAT
GTGGACGCTACCAACGTAGAGGGGGCCTTAGCCGCGCTTGAGGATCAGGT
GAGTGCCCTACACTTTGCCTGA
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