mRNA_H-paniculata_contig18292.4473.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18292.4473.1
Unique NamemRNA_H-paniculata_contig18292.4473.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18292.4473.1 vs. uniprot
Match: D8LGU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGU4_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 3.480e-32
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    1 GLVTLFLDKERDHLCWCPPGAAELVPDSRYRLNVHDIVEVSPGDENRRRCISLRSSDRPHALVLEIDSDELFDVLYQGFRRILERNKLRLTL 276
            GLVTLFLDKER++LCWCPPGAAELVPD RY L+V  +VEV PGD    R +SLRS+ R + LV E+DSD+L+D+L QG  RILERN LR TL
Sbjct:  339 GLVTLFLDKERENLCWCPPGAAELVPDERYSLSVRSLVEVVPGDSVHPRVLSLRSAGRANPLVFELDSDDLYDILSQGIVRILERNHLRDTL 430
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BLAST of mRNA_H-paniculata_contig18292.4473.1 vs. uniprot
Match: A0A6H5L4E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E4_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.210e-31
Identity = 61/92 (66.30%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    1 GLVTLFLDKERDHLCWCPPGAAELVPDSRYRLNVHDIVEVSPGDENRRRCISLRSSDRPHALVLEIDSDELFDVLYQGFRRILERNKLRLTL 276
            GLVTLFLDKER++LCWCPPGAAELVPD RY L+V  +VEV PGD    R +SLRS+ R + LV E+DSD+L+D+L +G  RILERN LR TL
Sbjct:  358 GLVTLFLDKERENLCWCPPGAAELVPDERYSLSVRSLVEVVPGDSVHPRVLSLRSTGRANPLVFELDSDDLYDILSEGIVRILERNHLRDTL 449
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18292.4473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGU4_ECTSI3.480e-3267.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4E4_9PHAE1.210e-3166.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18292contigH-paniculata_contig18292:433..2149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_001220.1
Exons2
Model size749
Cds size348
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18292.4473.1prot_H-paniculata_contig18292.4473.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18292 433..1749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929420.5615447-CDS-H-paniculata_contig18292:432..5491622929420.5615447-CDS-H-paniculata_contig18292:432..549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18292 433..549 +
1691480853.8660882-CDS-H-paniculata_contig18292:432..5491691480853.8660882-CDS-H-paniculata_contig18292:432..549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18292 433..549 +
1622929420.5774043-CDS-H-paniculata_contig18292:1518..17491622929420.5774043-CDS-H-paniculata_contig18292:1518..1749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18292 1519..1749 +
1691480853.8755338-CDS-H-paniculata_contig18292:1518..17491691480853.8755338-CDS-H-paniculata_contig18292:1518..1749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18292 1519..1749 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929420.5924356-UTR-H-paniculata_contig18292:1749..21491622929420.5924356-UTR-H-paniculata_contig18292:1749..2149Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18292 1750..2149 +
1691480853.8833172-UTR-H-paniculata_contig18292:1749..21491691480853.8833172-UTR-H-paniculata_contig18292:1749..2149Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18292 1750..2149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18292.4473.1

>prot_H-paniculata_contig18292.4473.1 ID=prot_H-paniculata_contig18292.4473.1|Name=mRNA_H-paniculata_contig18292.4473.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
GLVTLFLDKERDHLCWCPPGAAELVPDSRYRLNVHDIVEVSPGDENRRRC
ISLRSSDRPHALVLEIDSDELFDVLYQGFRRILERNKLRLTLSATNQARV
ANITGDASITQGEVV*
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mRNA from alignment at H-paniculata_contig18292:433..2149+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18292.4473.1 ID=mRNA_H-paniculata_contig18292.4473.1|Name=mRNA_H-paniculata_contig18292.4473.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1717bp|location=Sequence derived from alignment at H-paniculata_contig18292:433..2149+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCTAGTGACGCTGTTTTTAGATAAGGAACGCGATCACCTCTGCTGGTG
CCCCCCTGGTGCGGCGGAGCTCGTTCCAGACTCGCGGTATCGCCTGAACG
TTCACGACATTGTCGAGGTGGGTTGAGTTGCAAAGAAACTAAGGTTGCAC
CTTAGGACCACACACAAGTGACCAACGGCTATCCAAGAACGGAGGACCAA
CAACGGGGTAGGGTAGAGTGTGTACCACCTGGGGGAGGCAAGGGGCTGTA
CCCACGAACAGCAACAGTTGTATTATCACATTCGAACCCCCCAAAACTTT
GTAACGGTAGACGCATCGGCTTAATTCTCATCCTACCATGTCATACCGTT
TGCAGCACTTGTACATGTCGCAGCATATGTGAGGTCGTTCAGCTCATTGA
ACGATTAGACGGACGGTCTGTATTGTGTAGCGTGTGTTTTTAGGCTGTGT
GCGGAGCATTGAAGTTAATCTGTAACGGGCTGCCCATGATGACCCACGCT
GTAAGTCAGACCAACATTGAGTTCACCGGGGGGGGGGGGGGGGGCGGGGA
TAATCGTAGTTACCATTCAGATATCGTTCAGTGGAAGATAGCAGGGCGTG
TGACTGTGTAGCCGAATGTATGCGTGCGGTTGAGGGATTACTTGTTAGGG
TGGGGTTCTGCCAAAGCTAACGCGTCTTTTTTATTTCAACTTTGTGTCGC
ATAACAACTGAAAATATTGGCCACAAAATCATAACCGTTCTTGAGCTGTA
TTCATTGTGTCTGCGGTTACCCCAGATCATATATGAAGTCGTGCTGCCGC
GCAAAAGAGCTAGTCCTGTCCTACTATAGAGGGGATACTCCTTGTTCGAT
AGGGGGTACCTGAAACTTTGCATAAGGGGCCCCGTCTCGGCGAGGGAAAA
TGGTTGCTCTTGACGGCAAGCAGAGAGCCGATAACACAAAATAGTTCTCG
CGGTCAAGATATCAATTCGTATACTATGGATGGTTACCTCTATCGTGTAC
TTCTGCAACATCGCTGACTTCACCTTGCTTCTCTTTTTTCGTTTTCTATC
TTCATGTATGTCTACACACAACAACAACAAGAACAGGTTTCCCCTGGTGA
TGAAAACCGCCGTCGATGCATCTCGCTCCGCTCGTCGGACCGACCCCACG
CGTTGGTGCTAGAGATCGACTCGGACGAGCTGTTCGACGTCCTCTATCAG
GGCTTCAGGCGTATCCTCGAGCGAAACAAGCTGCGGCTAACGCTGTCGGC
GACGAACCAAGCGCGGGTCGCCAACATCACCGGGGATGCATCCATAACGC
AAGGGGAGGTTGTGTAGGAAAAAGATAACACGCGCCGTTTTTTTGTGACG
GAAGACATGTAGTGCGAGACTTGTGCGTAGCTTGGTGACGAGTGGGGGTG
TTTGGGGTGAGACTAAATAAATGACGGCTAAGCTAGCTATACATGAAGGG
CTCTTCTGCTCTTGGCGTTTCCCGCTTTTTCCTGTGTAGTTTTCTCGCCT
CCAAGGCTATCAGTGTTCGCGACGGTCTCTGAAGACAGACATGAATAGAG
AAGAGAACCCGTGTCAGCAGGAGCCTCGTGTCACCGAGACTGGTCCTTGG
TCACCGTGGTCAGTACTCGTGGTTCTGACGCCAGGTAGGTGCAGTCAGGA
AGAAGCCTTTTGCCACCTGAGGCTAGCTATGGATGTGATACCCATGGTCT
AAACTCAGGGAGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig18292:433..2149+

>mRNA_H-paniculata_contig18292.4473.1 ID=mRNA_H-paniculata_contig18292.4473.1|Name=mRNA_H-paniculata_contig18292.4473.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig18292:433..2149+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCTAGTGACGCTGTTTTTAGATAAGGAACGCGATCACCTCTGCTGGTG
CCCCCCTGGTGCGGCGGAGCTCGTTCCAGACTCGCGGTATCGCCTGAACG
TTCACGACATTGTCGAGGGGCTAGTGACGCTGTTTTTAGATAAGGAACGC
GATCACCTCTGCTGGTGCCCCCCTGGTGCGGCGGAGCTCGTTCCAGACTC
GCGGTATCGCCTGAACGTTCACGACATTGTCGAGGTTTCCCCTGGTGATG
AAAACCGCCGTCGATGCATCTCGCTCCGCTCGTCGGACCGACCCCACGCG
TTGGTGCTAGAGATCGACTCGGACGAGCTGTTCGACGTCCTCTATCAGGG
CTTCAGGCGTATCCTCGAGCGAAACAAGCTGCGGCTAACGCTGTCGGCGA
CGAACCAAGCGCGGGTCGCCAACATCACCGGGGATGCATCCATAACGCAA
GGGGAGGTTGTGTAGGTTTCCCCTGGTGATGAAAACCGCCGTCGATGCAT
CTCGCTCCGCTCGTCGGACCGACCCCACGCGTTGGTGCTAGAGATCGACT
CGGACGAGCTGTTCGACGTCCTCTATCAGGGCTTCAGGCGTATCCTCGAG
CGAAACAAGCTGCGGCTAACGCTGTCGGCGACGAACCAAGCGCGGGTCGC
CAACATCACCGGGGATGCATCCATAACGCAAGGGGAGGTTGTGTAG
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