mRNA_H-paniculata_contig1829.4472.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1829.4472.1
Unique NamemRNA_H-paniculata_contig1829.4472.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1829.4472.1 vs. uniprot
Match: D7G9E7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9E7_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 3.860e-52
Identity = 97/170 (57.06%), Postives = 128/170 (75.29%), Query Frame = 2 
Query:  542 GSSPHMPILHGISLAPLVVVVLVCVVVEVWAGVVNWRASRVTRQEASMLERRQTLKAGVVKTNYTSTFVENSKLKRLLLKIEKDIEQLQLEKAKREKSAGRVTRTLMWGVYGSLVVVMWGHPLIHLSPEYLFPSTRMHAFSGGGEAGCVGALSVIAMFRFGLASRFSVTA 1051
            G+SPH+P +  +S+  L +VV++C +VEV AG V W+ SRVTR EA+++ +RQTL+ GV KTNYT+TFVENSKLKRLLLK EKD+E++Q  + +R KS  +  R +   VYGS+VV+MWG PLI  SP+YL+PS+  HA SGG  AG VGALS++AMF FGL  R S +A
Sbjct:    6 GASPHLPSVMAVSVDTLFLVVMMCSLVEVVAGFVMWKTSRVTRTEAALISQRQTLRTGVAKTNYTATFVENSKLKRLLLKAEKDLERIQSARDRRLKSVAKAVRAVRVCVYGSMVVLMWGRPLISFSPDYLWPSSFSHALSGGRAAGSVGALSIVAMFLFGLVPRLSPSA 175
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BLAST of mRNA_H-paniculata_contig1829.4472.1 vs. uniprot
Match: A0A835YKR9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKR9_9STRA)

HSP 1 Score: 100 bits (250), Expect = 4.490e-21
Identity = 65/168 (38.69%), Postives = 95/168 (56.55%), Query Frame = 2 
Query:  548 SPHMPILHGISLAPLVVVVLVCVVVEVWAGVVNWRASRVTRQEASMLERRQTLKAGVVKTNYTSTFVENSKLKRLLLKIEKDIEQLQLEKAKREKSAGRVTRTLMWGVYGSLVVVMWGHPLIHLSPEYLFPSTRMHAFSGGGEAGC----VGALSVIAMFRFGLASRF 1039
            S  +P +  I+   L++ +LVCV+VE+ +G+ +  A R T+ E +  E    LK  +VKTNY   FVENSKL+R L+K+EK++E+L+ E+A R     R TR L    YG+LV   WG   I  +P Y+ P   + A +GG   G     V    V+ +F +GL  RF
Sbjct:    4 SAALPAVLAINPVGLILAILVCVIVELISGIAHAMAGRRTQAEVTYSEDVALLKVEIVKTNYPEKFVENSKLQRQLIKVEKELERLRGERAARRTKVQRWTRWLRLAAYGALVAAHWGQTAIRFTPAYVTP---LGAVAGGPLQGTPQGGVSIAGVVVLFWWGLGGRF 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1829.4472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9E7_ECTSI3.860e-5257.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YKR9_9STRA4.490e-2138.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1829contigH-paniculata_contig1829:6989..11008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_000670.1
Exons4
Model size1838
Cds size528
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1829.4472.1prot_H-paniculata_contig1829.4472.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1829 7515..10224 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929420.417251-UTR-H-paniculata_contig1829:6988..75141622929420.417251-UTR-H-paniculata_contig1829:6988..7514Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1829 6989..7514 +
1691480853.8033113-UTR-H-paniculata_contig1829:6988..75141691480853.8033113-UTR-H-paniculata_contig1829:6988..7514Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1829 6989..7514 +
1622929420.5098064-UTR-H-paniculata_contig1829:10224..110081622929420.5098064-UTR-H-paniculata_contig1829:10224..11008Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1829 10225..11008 +
1691480853.8554082-UTR-H-paniculata_contig1829:10224..110081691480853.8554082-UTR-H-paniculata_contig1829:10224..11008Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1829 10225..11008 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929420.4441397-CDS-H-paniculata_contig1829:7514..76131622929420.4441397-CDS-H-paniculata_contig1829:7514..7613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1829 7515..7613 +
1691480853.8158507-CDS-H-paniculata_contig1829:7514..76131691480853.8158507-CDS-H-paniculata_contig1829:7514..7613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1829 7515..7613 +
1622929420.4614265-CDS-H-paniculata_contig1829:8094..81931622929420.4614265-CDS-H-paniculata_contig1829:8094..8193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1829 8095..8193 +
1691480853.8251126-CDS-H-paniculata_contig1829:8094..81931691480853.8251126-CDS-H-paniculata_contig1829:8094..8193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1829 8095..8193 +
1622929420.4772673-CDS-H-paniculata_contig1829:9576..97141622929420.4772673-CDS-H-paniculata_contig1829:9576..9714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1829 9577..9714 +
1691480853.834054-CDS-H-paniculata_contig1829:9576..97141691480853.834054-CDS-H-paniculata_contig1829:9576..9714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1829 9577..9714 +
1622929420.492029-CDS-H-paniculata_contig1829:10032..102241622929420.492029-CDS-H-paniculata_contig1829:10032..10224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1829 10033..10224 +
1691480853.8432631-CDS-H-paniculata_contig1829:10032..102241691480853.8432631-CDS-H-paniculata_contig1829:10032..10224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1829 10033..10224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1829.4472.1

>prot_H-paniculata_contig1829.4472.1 ID=prot_H-paniculata_contig1829.4472.1|Name=mRNA_H-paniculata_contig1829.4472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=176bp
MSIVGGSSPHMPILHGISLAPLVVVVLVCVVVEVWAGVVNWRASRVTRQE
ASMLERRQTLKAGVVKTNYTSTFVENSKLKRLLLKIEKDIEQLQLEKAKR
EKSAGRVTRTLMWGVYGSLVVVMWGHPLIHLSPEYLFPSTRMHAFSGGGE
AGCVGALSVIAMFRFGLASRFSVTA*
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mRNA from alignment at H-paniculata_contig1829:6989..11008+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1829.4472.1 ID=mRNA_H-paniculata_contig1829.4472.1|Name=mRNA_H-paniculata_contig1829.4472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4020bp|location=Sequence derived from alignment at H-paniculata_contig1829:6989..11008+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACATACTTATGTACCGGTAACTGCTTCCCCTCCAAAGCACAGCTCAGT
CAGAGGCAGAAGGAGTGGAGCACTGCTATTGTGCTTTTTGATCTATTATG
AGATAGTATCCCTGGTTTCGCCTCAGTGTCCGACTCAAGTTTTCTCCCTC
GAATTCTCCAGCACTGCGCATGTCCCCATAGTCAGTTACGCCGCTCAACG
GAAAAATGTTCTCTATTTACCCGCAACCCAGAAGCTACTGTAATATTTAC
GTCCTGACTTGCGCATGGGTGATGTTCTTTAGGTGTGGGTGGCGTCACAG
GGTGACTTGTATTGAACAAATGCTCACGACCCCAGAATGGTCTATGACCC
AGCACATGTTCAAAACGCCGTGGTATTGAGGGGCTAGATATTGTTTGCTC
TGTACCCACCGCAGCTCACCCCCCAGCAGCAAGCCGGCGAAACTGGAAGG
CCGGGCATAAAGAAAGAAACGCCCTCAGTGGACGAGGAAGCAGGTCTCCA
GAAGTGCTGTAGCCAAGAGCAACATCATGTCGATCGTGGGAGGATCATCG
CCGCATATGCCGATACTGCATGGCATCAGCCTGGCTCCCCTGGTTGTTGT
GGTTCTAGTGTGCGTTGTGGTGGAGGTGCGGGCTATGGGTATCGATATGA
TGATGGATTTTTGTGCTGCTTCGCTATTTTTCGATAGGTCCATAGATGTT
TCACCCGCTTCTCATTTGCGCATGGTGGAATCCATAATCGTTTCAAAGTT
GAGGCCAAATAGATAATGAAGCCTACGCAGAACCCAGAGTCCGTGTGTAT
CTGTATCATGTGATGTAGACGCTAGACACCCTAAGGGCCTGGGACTGTTT
GCGCCAATAAGTGACGTTCTCACTCGTTCGTCCCGGACGCGCAAATTGAC
CTCGCGCTTATATATTTAGTGGAGACGATCAAGGGTGTTGCGTTTGTTTT
TATCAAAAACATTGATTCCTCCATCCCGGATGATATTTACGTCATCCCAA
AACGAATCTTGCCGTTGTCGCTGTGTTTGCATGCACGTATTCAACGAGGG
CAAACAGGACCAATAGAAGGACGTTTGTTGGCGCTTCCCTTGCGTATCTT
ACGCAGGTGTGGGCGGGCGTCGTGAATTGGAGGGCATCCAGGGTAACAAG
GCAAGAAGCGTCCATGTTGGAAAGGCGCCAAACACTCAAAGCTGGGGTGG
TGAAGGTGAGAATAGCTTGCTAAACGATGGGCATAGGATCAGCACTGGAT
CCTAATAGGCACAATGCAAGGGTTACGTTACTGAAGAGTAGCGATGGCTT
CACGTAATGGAGTATGGAAGCTAAGGATTATGTATCTCTCGATTACTCAT
TTCAGCTGCCCTAGTTCGAGGAATCAACAATGTTTTCTTCAAGGGAACGT
TACCATAAGATAGAAGAGCAGCTGGCAGTAGCACCTGTCCTCGCTGATAA
TTGCCTTTAGGCTGACCTGCGCATTGCAAGTGGTCCTAGGACAAAGCCAA
GGCCTTCGGTGGAATTGCTCGTAGTTTGCGATGATGCAGACTTTCAACTA
TGGCGGCGAAAGCGAAAACTGCAGACACTACACCTCACGATTTTGATGGT
AGTCGCTGACGTCCTCGACGGAAATGGCGGATAGTGGAGTATATTCAACA
GAGAGGGAGGCTGCGAGGCCCATGTGGCGAGGAGAATCTAGGAGAAGCGG
TGCTGCTATTGATAGCTTGCTCCAGGAATAAGCGTGCAGTCGACAAGGCG
CTGTCGGCACGGCGGCCCGGGTAGGACGGCGGCCTTAGGGTGCCTTGCGA
AAAGAGAAACTGTCGACGAAGTTATAAACTCTGCATGAAACAAGATGTCT
TTGCCAGTGTGGTCTGCAGCAGCATTTGAAGCTTATCGACAGCCAAGTTG
TGAATGAAGCCAGCGAGCAATATTGGACAGCGTGAATGAGGCATAGCACG
CTAGTGGGTAACTTCTGCTCCTCATATCAGCGGGCAGTGCGGACGAGGCT
TAGCCAGCGAAATACTCAGCTCCGTGCACGAGTTGTTTCAAGGGATGCCT
TCCATTTGTACTCGGTACTACTCCAATGTCCTCGGTGGTGGTGCATTCCA
ACGATCAACGGAAAGAGAGAGAAGGGTGCACGTGGGAGCAGGGTAGTGTA
TTTTCTGTAGCGGGTAAAATTAGTAGCTCTTTCCTTCATTCGAAAGGAAA
TCACACTATGCAACTCCGCTCCTCGATGGCGCAGATGTAGCTCGCGTGCG
TTACTTACGGTGTAGTTCATTTGATTGTTAGATGGCTCCTTTTTCTAAGT
CGCATCGAATGACGTCTCCTGATGTCTCCCGATGTCGTCAGTAAGTCCTA
CACACAGAACTGCTTCGCGGTATGATCACAGTCTGAGGGAGCATCGCGCT
ACTGCTGCTCGTTCGGAGAGCGTGTGCGTTGGCCTTTCGTTAGCGAGTTG
CGACGCATCTGTTTCTCAAGTCGACAGCTTCACCAACAAATCTACGCTGG
TAAGTCGCACGTCCGTGCTTGCTTTCTTGCATGATTCTCCGTGGTGCTCC
GTGCTGTGTGGATTTGGATTTCGTTCTCATTGCCTCAGACAAACTACACG
TCAACATTTGTGGAGAACTCCAAGTTGAAGAGACTGCTACTCAAGATCGA
GAAAGACATTGAGCAACTTCAGCTCGAGAAAGCGAAACGGGAAAAATCGG
CGGGAAGGGTTACCCGTACACTCATGGTACGTGCACCAACCTAAGTGATT
GCAGCGATGCGCTCACCATGCGCTGAACATTGCATATGTATCAATTGCGT
TCTCGTCTATGCTGTGAAATTGTTGGCTGCTTGCCTCGCCCACCTGTACC
TGTGTTATCAGTGTCTCTTTTTCACCACTGGTTTTAATTACGTTCGTATA
CCTCGTGATTGGCCGCCAGGACTGTGGATATGTGTAGCGATGTGATGTAT
TGCGCATCTTTTGGCACGTGAACTCTGACATCTGCAGTATGTCGCCGCTT
TTCGTTGTATGTGATGTCTTGTTCTATCTTCGTCCCTTTGGCAGTGGGGC
GTCTACGGATCTTTGGTGGTGGTAATGTGGGGACACCCGTTGATCCACTT
GTCCCCAGAGTACCTCTTCCCGTCTACGCGAATGCACGCCTTTTCGGGAG
GAGGGGAGGCGGGGTGCGTGGGGGCGTTGTCAGTTATTGCCATGTTCCGA
TTCGGTTTAGCTTCCCGGTTCTCGGTAACAGCATAGGGCTTGGCACTAAG
GATTCGAGATGTATGTAACGTCGCCGCTTTTCGTTGATGTGGTGTCTTCT
TCTATCTGCGTCCCTTTCGTAGTGGGGCGTCTACGGATCTTTGGTGGTGG
TAATGTGGGGACTCTCGTTGATCCATTTGTCCCCAGAGTACCTCTTCTCG
TCTACTCGAATGCATGCCTTTTCGGGAGGAGGGGTGGCGGGTGCATGGCG
GCGTTGTCAGTTAGTGACGTGTTCCGATTCGGTTTAGCTTCCCGGTTCTC
GATAACAGTATAGGGCTTGGCGCTGAGGATTCGACATGTATGTAACGGCA
GACCACGGATTTCCTTTGAGTTTGTTAATCGACCTAATTGTGTGGCTCTT
AGGTTGGAGGCAAGAGTAATGAGGGAACGCGATGATGCACTGCTGAGCTT
ATGTCGTATTTCGTTGAAATTGTTGCGATTTTTGTGTCTGTCAGTCACTG
TCGAGCGACAGCGGGGTGGCACGCCCCTTCATGCCGACAATGTGATGACC
TTTCTGCACCGTGCTACATACAAAGTTGTGACATTTACCTTAATTGTATG
TGGTTTAGAAGTGCCAACTAAGGAGTTGGAAGTAAGAGTCCTCTTAGCCT
CCCGACAGCAATAGGTTCATGCGTGAAATGCCGTATAGCTGCAACGTAGA
TAGAATACATGTCCACCCGCCATGCAATTGTTGTTCACCGGCGATCCGCT
TTGCCACCTCTACTACTGTCAGATTTGTGCTCACAATTGGTTGTTAATTG
TCCGCATCCACCAACAGACC
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Coding sequence (CDS) from alignment at H-paniculata_contig1829:6989..11008+

>mRNA_H-paniculata_contig1829.4472.1 ID=mRNA_H-paniculata_contig1829.4472.1|Name=mRNA_H-paniculata_contig1829.4472.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at H-paniculata_contig1829:6989..11008+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGATCGTGGGAGGATCATCGCCGCATATGCCGATACTGCATGGCAT
CAGCCTGGCTCCCCTGGTTGTTGTGGTTCTAGTGTGCGTTGTGGTGGAGA
TGTCGATCGTGGGAGGATCATCGCCGCATATGCCGATACTGCATGGCATC
AGCCTGGCTCCCCTGGTTGTTGTGGTTCTAGTGTGCGTTGTGGTGGAGGT
GTGGGCGGGCGTCGTGAATTGGAGGGCATCCAGGGTAACAAGGCAAGAAG
CGTCCATGTTGGAAAGGCGCCAAACACTCAAAGCTGGGGTGGTGAAGGTG
TGGGCGGGCGTCGTGAATTGGAGGGCATCCAGGGTAACAAGGCAAGAAGC
GTCCATGTTGGAAAGGCGCCAAACACTCAAAGCTGGGGTGGTGAAGACAA
ACTACACGTCAACATTTGTGGAGAACTCCAAGTTGAAGAGACTGCTACTC
AAGATCGAGAAAGACATTGAGCAACTTCAGCTCGAGAAAGCGAAACGGGA
AAAATCGGCGGGAAGGGTTACCCGTACACTCATGACAAACTACACGTCAA
CATTTGTGGAGAACTCCAAGTTGAAGAGACTGCTACTCAAGATCGAGAAA
GACATTGAGCAACTTCAGCTCGAGAAAGCGAAACGGGAAAAATCGGCGGG
AAGGGTTACCCGTACACTCATGTGGGGCGTCTACGGATCTTTGGTGGTGG
TAATGTGGGGACACCCGTTGATCCACTTGTCCCCAGAGTACCTCTTCCCG
TCTACGCGAATGCACGCCTTTTCGGGAGGAGGGGAGGCGGGGTGCGTGGG
GGCGTTGTCAGTTATTGCCATGTTCCGATTCGGTTTAGCTTCCCGGTTCT
CGGTAACAGCATAGTGGGGCGTCTACGGATCTTTGGTGGTGGTAATGTGG
GGACACCCGTTGATCCACTTGTCCCCAGAGTACCTCTTCCCGTCTACGCG
AATGCACGCCTTTTCGGGAGGAGGGGAGGCGGGGTGCGTGGGGGCGTTGT
CAGTTATTGCCATGTTCCGATTCGGTTTAGCTTCCCGGTTCTCGGTAACA
GCATAG
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