mRNA_H-paniculata_contig18286.4471.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18286.4471.1
Unique NamemRNA_H-paniculata_contig18286.4471.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18286.4471.1 vs. uniprot
Match: D8LN62_ECTSI (L-aspartate oxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN62_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 2.860e-47
Identity = 78/96 (81.25%), Postives = 89/96 (92.71%), Query Frame = 1 
Query:   28 SYMSTLQLAPRDVVSRTIMSEMRLQGASHMYLDISHRPAEWLRGRFPSIHEHCMKYGLDMTREPLPVVPAAHYFCGGVSSDLTGRTSVPGLFAAGE 315
            +Y    +LAPRDVVSRTI+SEMRLQGA HMYLDISHRPA+W+RGRFPSI+EHCM+ GLDMT +PLPVVPAAHYFCGGV++DLTGRT+VPGLFAAGE
Sbjct:  397 NYHPDGELAPRDVVSRTILSEMRLQGAPHMYLDISHRPADWIRGRFPSIYEHCMRQGLDMTVQPLPVVPAAHYFCGGVATDLTGRTTVPGLFAAGE 492
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BLAST of mRNA_H-paniculata_contig18286.4471.1 vs. uniprot
Match: A0A4D9DEQ0_9STRA (L-aspartate oxidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEQ0_9STRA)

HSP 1 Score: 141 bits (356), Expect = 4.980e-37
Identity = 67/90 (74.44%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:   46 QLAPRDVVSRTIMSEMRLQGASHMYLDISHRPAEWLRGRFPSIHEHCMKYGLDMTREPLPVVPAAHYFCGGVSSDLTGRTSVPGLFAAGE 315
            +LAPRDVVSR I+SEM   GA HM+LDISHR A WLRGRFP+I  HC   GLDMT++ LPVVPAAHYFCGGV +DL GRTS+PGLFAAGE
Sbjct:  449 ELAPRDVVSRMIVSEMARTGAEHMFLDISHRDAAWLRGRFPAIDAHCRARGLDMTKQALPVVPAAHYFCGGVVTDLEGRTSLPGLFAAGE 538
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BLAST of mRNA_H-paniculata_contig18286.4471.1 vs. uniprot
Match: A0A024UFS1_9STRA (L-aspartate oxidase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UFS1_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.070e-35
Identity = 61/90 (67.78%), Postives = 77/90 (85.56%), Query Frame = 1 
Query:   46 QLAPRDVVSRTIMSEMRLQGASHMYLDISHRPAEWLRGRFPSIHEHCMKYGLDMTREPLPVVPAAHYFCGGVSSDLTGRTSVPGLFAAGE 315
            +LAPRDVV+R I+SEM  +G S MYLDISH PAEWL+GRFP+I++HC+  G+DMT++ +PVVPAAHY CGGV  DL+G+TSVP L+AAGE
Sbjct:  312 ELAPRDVVARMILSEMEKEGESCMYLDISHMPAEWLKGRFPTIYQHCLARGIDMTKDAMPVVPAAHYHCGGVQVDLSGKTSVPRLYAAGE 401
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BLAST of mRNA_H-paniculata_contig18286.4471.1 vs. uniprot
Match: A0A418AGV3_9STRA (L-aspartate oxidase (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AGV3_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.120e-35
Identity = 61/90 (67.78%), Postives = 77/90 (85.56%), Query Frame = 1 
Query:   46 QLAPRDVVSRTIMSEMRLQGASHMYLDISHRPAEWLRGRFPSIHEHCMKYGLDMTREPLPVVPAAHYFCGGVSSDLTGRTSVPGLFAAGE 315
            +LAPRDVV+R I+SEM  +G S MYLDISH PAEWL+GRFP+I++HC+  G+DMT++ +PVVPAAHY CGGV  DL+G+TSVP L+AAGE
Sbjct:  274 ELAPRDVVARMILSEMEKEGESCMYLDISHMPAEWLKGRFPTIYQHCLARGIDMTKDAMPVVPAAHYHCGGVQVDLSGKTSVPRLYAAGE 363
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BLAST of mRNA_H-paniculata_contig18286.4471.1 vs. uniprot
Match: A0A2E9DFX6_9GAMM (L-aspartate oxidase n=2 Tax=Oceanospirillaceae TaxID=135620 RepID=A0A2E9DFX6_9GAMM)

HSP 1 Score: 136 bits (342), Expect = 1.450e-35
Identity = 59/98 (60.20%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:   22 LPSYMSTLQLAPRDVVSRTIMSEMRLQGASHMYLDISHRPAEWLRGRFPSIHEHCMKYGLDMTREPLPVVPAAHYFCGGVSSDLTGRTSVPGLFAAGE 315
            +P++    +LAPRD+V+RTI  EM+  G  ++YLDISHRPAE+++  FP+I+E C+ YG+DMTREP+PVVPAAHY CGGV +DL GRT +PGL+A GE
Sbjct:  267 MPNFDERAELAPRDIVARTIDHEMKRLGLEYVYLDISHRPAEFIKAHFPTIYERCLSYGIDMTREPIPVVPAAHYTCGGVMTDLAGRTDLPGLYAIGE 364
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BLAST of mRNA_H-paniculata_contig18286.4471.1 vs. uniprot
Match: A0A1V9YT66_9STRA (L-aspartate oxidase (Fragment) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YT66_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.760e-35
Identity = 64/95 (67.37%), Postives = 76/95 (80.00%), Query Frame = 1 
Query:   31 YMSTLQLAPRDVVSRTIMSEMRLQGASHMYLDISHRPAEWLRGRFPSIHEHCMKYGLDMTREPLPVVPAAHYFCGGVSSDLTGRTSVPGLFAAGE 315
            Y  + +LAPRDVV+R I+SEM   G   MYLDISH  A WLRGRFP+I+EHC+  G+DMT+EP+PVVPAAHY CGGV  DL+GRTSVP L+AAGE
Sbjct:  274 YHPSGELAPRDVVARMILSEMDKTGDDCMYLDISHMDAAWLRGRFPTIYEHCLARGIDMTKEPMPVVPAAHYHCGGVKVDLSGRTSVPRLYAAGE 368
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BLAST of mRNA_H-paniculata_contig18286.4471.1 vs. uniprot
Match: A0A6S9FA36_HETAK (L-aspartate oxidase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FA36_HETAK)

HSP 1 Score: 136 bits (343), Expect = 1.810e-35
Identity = 63/95 (66.32%), Postives = 78/95 (82.11%), Query Frame = 1 
Query:   31 YMSTLQLAPRDVVSRTIMSEMRLQGASHMYLDISHRPAEWLRGRFPSIHEHCMKYGLDMTREPLPVVPAAHYFCGGVSSDLTGRTSVPGLFAAGE 315
            Y    +LAPRDVV+R I+SEM+  G+ H+YLDISHR A +L+ RFPSI+EHC+  GLD+T  P+P+VPAAHYFCGGV++D  GRTSVPGLFAAGE
Sbjct:  337 YHELGELAPRDVVARMIVSEMQRLGSEHVYLDISHRDAAFLKDRFPSIYEHCLARGLDLTAGPVPIVPAAHYFCGGVAADTAGRTSVPGLFAAGE 431
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BLAST of mRNA_H-paniculata_contig18286.4471.1 vs. uniprot
Match: K3WCY3_GLOUD (L-aspartate oxidase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCY3_GLOUD)

HSP 1 Score: 135 bits (341), Expect = 2.540e-35
Identity = 61/90 (67.78%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:   46 QLAPRDVVSRTIMSEMRLQGASHMYLDISHRPAEWLRGRFPSIHEHCMKYGLDMTREPLPVVPAAHYFCGGVSSDLTGRTSVPGLFAAGE 315
            +LAPRDVV+RTI++EM  QG S MYLDISH  A+W++ RFP+I++HC+  G+DMT+EP+PVVPAAHY CGGV  DL G TSVPGL+AAGE
Sbjct:  323 ELAPRDVVARTILAEMEKQGESCMYLDISHEDAKWIKERFPTIYQHCLARGIDMTKEPMPVVPAAHYHCGGVEVDLNGCTSVPGLYAAGE 412
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BLAST of mRNA_H-paniculata_contig18286.4471.1 vs. uniprot
Match: A0A2D4CDV2_PYTIN (L-aspartate oxidase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDV2_PYTIN)

HSP 1 Score: 134 bits (336), Expect = 1.290e-34
Identity = 59/95 (62.11%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:   31 YMSTLQLAPRDVVSRTIMSEMRLQGASHMYLDISHRPAEWLRGRFPSIHEHCMKYGLDMTREPLPVVPAAHYFCGGVSSDLTGRTSVPGLFAAGE 315
            Y    +LAPRDVV+RTI++EM  QG   M+LDISH  +EWL+ RFP+I++HC+  G+DMT+EP+PVVPAAHY CGGV  DL G+T++PGL+AAGE
Sbjct:  314 YHPAGELAPRDVVARTILAEMAKQGEPCMFLDISHEDSEWLKSRFPTIYQHCLDRGIDMTKEPMPVVPAAHYHCGGVEVDLEGQTTIPGLYAAGE 408
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BLAST of mRNA_H-paniculata_contig18286.4471.1 vs. uniprot
Match: A0A1V3NQA8_9GAMM (L-aspartate oxidase n=1 Tax=Thioalkalivibrio denitrificans TaxID=108003 RepID=A0A1V3NQA8_9GAMM)

HSP 1 Score: 133 bits (335), Expect = 1.520e-34
Identity = 60/105 (57.14%), Postives = 79/105 (75.24%), Query Frame = 1 
Query:    1 VPSVAPALPSYMSTLQLAPRDVVSRTIMSEMRLQGASHMYLDISHRPAEWLRGRFPSIHEHCMKYGLDMTREPLPVVPAAHYFCGGVSSDLTGRTSVPGLFAAGE 315
            +P   P +  +    +LAPRD+V+R I  EM+  GA ++YLDISH+PA+++R  FP+IHEHC+K+G DMTREPLPVVPAAHY CGGV +DL  RT + GL+A GE
Sbjct:  274 LPDGTPFMERFDPRAELAPRDIVARAIDHEMKRLGADYVYLDISHKPADFIRSHFPTIHEHCLKFGFDMTREPLPVVPAAHYTCGGVVTDLRARTDLEGLYAIGE 378
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18286.4471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN62_ECTSI2.860e-4781.25L-aspartate oxidase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A4D9DEQ0_9STRA4.980e-3774.44L-aspartate oxidase n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A024UFS1_9STRA1.070e-3567.78L-aspartate oxidase n=1 Tax=Aphanomyces invadans T... [more]
A0A418AGV3_9STRA1.120e-3567.78L-aspartate oxidase (Fragment) n=1 Tax=Aphanomyces... [more]
A0A2E9DFX6_9GAMM1.450e-3560.20L-aspartate oxidase n=2 Tax=Oceanospirillaceae Tax... [more]
A0A1V9YT66_9STRA1.760e-3567.37L-aspartate oxidase (Fragment) n=1 Tax=Achlya hypo... [more]
A0A6S9FA36_HETAK1.810e-3566.32L-aspartate oxidase n=1 Tax=Heterosigma akashiwo T... [more]
K3WCY3_GLOUD2.540e-3567.78L-aspartate oxidase n=1 Tax=Globisporangium ultimu... [more]
A0A2D4CDV2_PYTIN1.290e-3462.11L-aspartate oxidase n=1 Tax=Pythium insidiosum Tax... [more]
A0A1V3NQA8_9GAMM1.520e-3457.14L-aspartate oxidase n=1 Tax=Thioalkalivibrio denit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18286contigH-paniculata_contig18286:260..577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.0
Seed ortholog evalue2.9e-40
Seed eggNOG ortholog2880.D8LN62
KEGG rclassRC00045
KEGG koko:K00234,ko:K15710
KEGG ReactionR02164
KEGG Pathwayko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00009,M00011,M00148
Hectar predicted targeting categoryother localisation
GOsGO:0000104,GO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005749,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008177,GO:0009055,GO:0009060,GO:0009061,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016627,GO:0016635,GO:0016999,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0036094,GO:0040011,GO:0042330,GO:0042331,GO:0042773,GO:0042775,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044459,GO:0044464,GO:0045257,GO:0045273,GO:0045274,GO:0045281,GO:0045282,GO:0045283,GO:0045333,GO:0046034,GO:0046483,GO:0046956,GO:0048037,GO:0050660,GO:0050662,GO:0050896,GO:0052128,GO:0055086,GO:0055114,GO:0070469,GO:0070470,GO:0071704,GO:0071944,GO:0072350,GO:0072521,GO:0097159,GO:0098796,GO:0098797,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.anaerobic respiration
EggNOG OGsCOG1053@1,KOG2403@2759
Ec32 ortholog descriptionL-aspartate oxidase
Ec32 orthologEc-05_003640.1
EC1.3.5.1,2.3.2.27
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04121
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929420.3305602-CDS-H-paniculata_contig18286:259..5771622929420.3305602-CDS-H-paniculata_contig18286:259..577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18286 260..577 +
1691480853.788984-CDS-H-paniculata_contig18286:259..5771691480853.788984-CDS-H-paniculata_contig18286:259..577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18286 260..577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18286.4471.1prot_H-paniculata_contig18286.4471.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18286 260..577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18286.4471.1

>prot_H-paniculata_contig18286.4471.1 ID=prot_H-paniculata_contig18286.4471.1|Name=mRNA_H-paniculata_contig18286.4471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
VPSVAPALPSYMSTLQLAPRDVVSRTIMSEMRLQGASHMYLDISHRPAEW
LRGRFPSIHEHCMKYGLDMTREPLPVVPAAHYFCGGVSSDLTGRTSVPGL
FAAGES
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mRNA from alignment at H-paniculata_contig18286:260..577+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18286.4471.1 ID=mRNA_H-paniculata_contig18286.4471.1|Name=mRNA_H-paniculata_contig18286.4471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at H-paniculata_contig18286:260..577+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCCCAGCGTTGCACCCGCCCTTCCCTCCTACATGTCTACCCTTCAGCT
CGCTCCGCGTGACGTGGTGAGCCGCACCATCATGAGCGAGATGCGTCTGC
AGGGAGCTTCCCACATGTATCTGGACATCTCCCACCGCCCGGCCGAGTGG
CTACGGGGCCGATTTCCGAGTATCCACGAGCACTGCATGAAGTACGGCCT
GGACATGACTCGCGAGCCGCTGCCCGTGGTCCCTGCCGCCCACTATTTCT
GTGGAGGCGTGTCGTCGGACTTGACTGGCCGTACTTCGGTGCCAGGGCTG
TTTGCTGCCGGTGAGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig18286:260..577+

>mRNA_H-paniculata_contig18286.4471.1 ID=mRNA_H-paniculata_contig18286.4471.1|Name=mRNA_H-paniculata_contig18286.4471.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig18286:260..577+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCCCAGCGTTGCACCCGCCCTTCCCTCCTACATGTCTACCCTTCAGCT
CGCTCCGCGTGACGTGGTGAGCCGCACCATCATGAGCGAGATGCGTCTGC
AGGGAGCTTCCCACATGTATCTGGACATCTCCCACCGCCCGGCCGAGTGG
CTACGGGGCCGATTTCCGAGTATCCACGAGCACTGCATGAAGTACGGCCT
GGACATGACTCGCGAGCCGCTGCCCGTGGTCCCTGCCGCCCACTATTTCT
GTGGAGGCGTGTCGTCGGACTTGACTGGCCGTACTTCGGTGCCAGGGCTG
TTTGCTGCCGGTGAGAGCGTCCCCAGCGTTGCACCCGCCCTTCCCTCCTA
CATGTCTACCCTTCAGCTCGCTCCGCGTGACGTGGTGAGCCGCACCATCA
TGAGCGAGATGCGTCTGCAGGGAGCTTCCCACATGTATCTGGACATCTCC
CACCGCCCGGCCGAGTGGCTACGGGGCCGATTTCCGAGTATCCACGAGCA
CTGCATGAAGTACGGCCTGGACATGACTCGCGAGCCGCTGCCCGTGGTCC
CTGCCGCCCACTATTTCTGTGGAGGCGTGTCGTCGGACTTGACTGGCCGT
ACTTCGGTGCCAGGGCTGTTTGCTGCCGGTGAGAGC
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