mRNA_H-paniculata_contig18280.4469.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18280.4469.1
Unique NamemRNA_H-paniculata_contig18280.4469.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18280.4469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18280contigH-paniculata_contig18280:946..1655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size710
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18280.4469.1prot_H-paniculata_contig18280.4469.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18280 1151..1570 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929420.1255908-UTR-H-paniculata_contig18280:945..11501622929420.1255908-UTR-H-paniculata_contig18280:945..1150Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18280 946..1150 +
1691480853.7082644-UTR-H-paniculata_contig18280:945..11501691480853.7082644-UTR-H-paniculata_contig18280:945..1150Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18280 946..1150 +
1622929420.1563156-UTR-H-paniculata_contig18280:1570..16551622929420.1563156-UTR-H-paniculata_contig18280:1570..1655Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18280 1571..1655 +
1691480853.7274277-UTR-H-paniculata_contig18280:1570..16551691480853.7274277-UTR-H-paniculata_contig18280:1570..1655Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18280 1571..1655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929420.1420639-CDS-H-paniculata_contig18280:1150..15701622929420.1420639-CDS-H-paniculata_contig18280:1150..1570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18280 1151..1570 +
1691480853.71758-CDS-H-paniculata_contig18280:1150..15701691480853.71758-CDS-H-paniculata_contig18280:1150..1570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18280 1151..1570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18280.4469.1

>prot_H-paniculata_contig18280.4469.1 ID=prot_H-paniculata_contig18280.4469.1|Name=mRNA_H-paniculata_contig18280.4469.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
MTKPQNQCPEYPLPRNHMACFLGGGRWNVPPSPGAPVSVWCCIYDKSQYL
DVFGIRYIVYSMQYQYVGMWVCDMWRTFVVQQYSIPSTLTITVSQTVLRL
VSTYHSAGLEHKNVWYEWNMTNKKKLKNASSTEQKPQTR*
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mRNA from alignment at H-paniculata_contig18280:946..1655+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18280.4469.1 ID=mRNA_H-paniculata_contig18280.4469.1|Name=mRNA_H-paniculata_contig18280.4469.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=710bp|location=Sequence derived from alignment at H-paniculata_contig18280:946..1655+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGACCGCTACGACAAAGCCAAGGCCTGCGTTACCAAGGTCGCGTAACCT
GCACTACAGACCGGTGACGTATCAACCGCGACACTGGACTGCGTAATCAC
TCACCACAGGCTCAGTACTGACTGTTGCAGAATAAACTCTGTTTGAAGAG
AGACACTTGTTGCTGCCAAGCTTGGGTCAGGGCCACTTCAAACATTCTTC
AGGGAATGACAAAGCCGCAAAACCAATGTCCAGAATATCCGCTGCCTCGA
AATCATATGGCGTGTTTTTTGGGGGGGGGCAGATGGAATGTGCCCCCCTC
CCCCGGCGCGCCAGTGAGCGTGTGGTGCTGTATATACGATAAATCCCAAT
ATCTTGATGTATTTGGTATCAGGTATATAGTATATAGTATGCAGTATCAG
TATGTGGGTATGTGGGTTTGTGACATGTGGAGAACGTTTGTAGTACAACA
ATATAGTATACCATCTACATTAACTATCACAGTGTCACAGACCGTGCTTC
GCCTCGTGTCTACGTATCATAGCGCAGGCCTGGAACACAAAAACGTATGG
TATGAATGGAATATGACAAATAAAAAAAAACTCAAAAATGCCTCGTCTAC
GGAACAAAAACCCCAAACAAGATAACTAACCACGGACCTACGCCCGAACG
GGTAGGGTAGCTCGTGTACTGAGCATGACTGGAAGTCTAGTCAGAGGTTT
TTAGTGGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig18280:946..1655+

>mRNA_H-paniculata_contig18280.4469.1 ID=mRNA_H-paniculata_contig18280.4469.1|Name=mRNA_H-paniculata_contig18280.4469.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig18280:946..1655+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAAAGCCGCAAAACCAATGTCCAGAATATCCGCTGCCTCGAAATCA
TATGGCGTGTTTTTTGGGGGGGGGCAGATGGAATGTGCCCCCCTCCCCCG
GCGCGCCAGTGAGCGTGTGGTGCTGTATATACGATAAATCCCAATATCTT
GATGTATTTGGTATCAGGTATATAGTATATAGTATGCAGTATCAGTATGT
GGGTATGTGGGTTTGTGACATGTGGAGAACGTTTGTAGTACAACAATATA
GTATACCATCTACATTAACTATCACAGTGTCACAGACCGTGCTTCGCCTC
GTGTCTACGTATCATAGCGCAGGCCTGGAACACAAAAACGTATGGTATGA
ATGGAATATGACAAATAAAAAAAAACTCAAAAATGCCTCGTCTACGGAAC
AAAAACCCCAAACAAGATAAATGACAAAGCCGCAAAACCAATGTCCAGAA
TATCCGCTGCCTCGAAATCATATGGCGTGTTTTTTGGGGGGGGGCAGATG
GAATGTGCCCCCCTCCCCCGGCGCGCCAGTGAGCGTGTGGTGCTGTATAT
ACGATAAATCCCAATATCTTGATGTATTTGGTATCAGGTATATAGTATAT
AGTATGCAGTATCAGTATGTGGGTATGTGGGTTTGTGACATGTGGAGAAC
GTTTGTAGTACAACAATATAGTATACCATCTACATTAACTATCACAGTGT
CACAGACCGTGCTTCGCCTCGTGTCTACGTATCATAGCGCAGGCCTGGAA
CACAAAAACGTATGGTATGAATGGAATATGACAAATAAAAAAAAACTCAA
AAATGCCTCGTCTACGGAACAAAAACCCCAAACAAGATAA
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