mRNA_H-paniculata_contig1828.4468.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1828.4468.1
Unique NamemRNA_H-paniculata_contig1828.4468.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1828.4468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1828contigH-paniculata_contig1828:22377..23363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size188
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929420.0659719-CDS-H-paniculata_contig1828:22376..224061622929420.0659719-CDS-H-paniculata_contig1828:22376..22406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1828 22377..22406 +
1691480853.681892-CDS-H-paniculata_contig1828:22376..224061691480853.681892-CDS-H-paniculata_contig1828:22376..22406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1828 22377..22406 +
1622929420.080971-CDS-H-paniculata_contig1828:23207..233631622929420.080971-CDS-H-paniculata_contig1828:23207..23363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1828 23208..23363 +
1691480853.6915276-CDS-H-paniculata_contig1828:23207..233631691480853.6915276-CDS-H-paniculata_contig1828:23207..23363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1828 23208..23363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1828.4468.1prot_H-paniculata_contig1828.4468.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1828 22377..23363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1828.4468.1

>prot_H-paniculata_contig1828.4468.1 ID=prot_H-paniculata_contig1828.4468.1|Name=mRNA_H-paniculata_contig1828.4468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
QTPASSSRPPVPSISEATFLHSVARSVSGRLPEEVFAQWYNSKGQVDHML
SYATTWTAAGEV
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mRNA from alignment at H-paniculata_contig1828:22377..23363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1828.4468.1 ID=mRNA_H-paniculata_contig1828.4468.1|Name=mRNA_H-paniculata_contig1828.4468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=987bp|location=Sequence derived from alignment at H-paniculata_contig1828:22377..23363+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAACACCAGCTTCTTCCAGCAGGCCGCCGGTAATGATGGCCTTGAATCC
CTAGAGACTGGCAGCAATTTTGGTTGTCACCTGTCGAATTTATGGCTATC
CGTGCACGAGGAAATTACACCTGAAGTCACTCTTTTTCGTCTTGTTTTTT
TACCCATTACGTAATAACTCAACGAAACATTCTTCAATTTGCAAACCCTC
TCTTCGTCAAACGCGGCTTAATTAGGGCTATCCAACGAACCAATCAACGT
GTGAATCATCGGGCTCGTACCCAACAAGTTTAGTTCGGGTATCCATGTTT
GGCACTAGTGATTCAGGGTGTCCATTTTGACTGAGTGTTTCTCACGCTAT
TTCAATATTTTTTTCCTCGCTTGTTTTGTTCTCCGCTTATGCTGTACCAT
GTTTCATATGGATTCGATTTGCAGTACGTGTGTCGTCACAAATATACGCA
AGAATAGGTTCTATGCAAACAAAAGGCAAAAAATAAGCGTAAAAACGTTC
CACTGACAGGCTTCAAAACGGTGCTTCTTGCGCTCTTGCGTGGCGAGAAT
AATCTCTCTGCATCGTACAAAACCATGCCGCCGCATCGGAGCTAAACTAC
TAGACATGTTCTACCCACCCCGATGACCCAGCGTACGAACACGTAGGTCC
CGTTGCTAAGATACGAAAGCGACTCTCGATCGATCGCAAAAGACCGTACT
ATAACTGTGTATCTCGGATATCTCGGGGAAAACCAGGATAGTCGCGAAGC
GACCGTGTCGGCGAACTGGCATTATGCACTCGTCCATGCCTTACCCATCC
TGCATCTGTGCGCCGTCCGCATGCCGTGCAGGTGCCATCTATATCAGAGG
CAACATTTCTTCATAGCGTTGCTCGGTCGGTAAGCGGCAGGTTACCAGAG
GAGGTCTTCGCCCAGTGGTACAACAGTAAAGGACAAGTCGACCACATGCT
TTCATATGCGACCACGTGGACCGCAGCGGGAGAAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig1828:22377..23363+

>mRNA_H-paniculata_contig1828.4468.1 ID=mRNA_H-paniculata_contig1828.4468.1|Name=mRNA_H-paniculata_contig1828.4468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig1828:22377..23363+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAACACCAGCTTCTTCCAGCAGGCCGCCGCAAACACCAGCTTCTTCCAG
CAGGCCGCCGGTGCCATCTATATCAGAGGCAACATTTCTTCATAGCGTTG
CTCGGTCGGTAAGCGGCAGGTTACCAGAGGAGGTCTTCGCCCAGTGGTAC
AACAGTAAAGGACAAGTCGACCACATGCTTTCATATGCGACCACGTGGAC
CGCAGCGGGAGAAGTGGTGCCATCTATATCAGAGGCAACATTTCTTCATA
GCGTTGCTCGGTCGGTAAGCGGCAGGTTACCAGAGGAGGTCTTCGCCCAG
TGGTACAACAGTAAAGGACAAGTCGACCACATGCTTTCATATGCGACCAC
GTGGACCGCAGCGGGAGAAGTG
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