mRNA_H-paniculata_contig18279.4467.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18279.4467.1
Unique NamemRNA_H-paniculata_contig18279.4467.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18279.4467.1 vs. uniprot
Match: A0A6P6SPT9_COFAR (zinc protease PQQL-like isoform X1 n=6 Tax=Coffea TaxID=13442 RepID=A0A6P6SPT9_COFAR)

HSP 1 Score: 70.9 bits (172), Expect = 9.880e-13
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 GAIQQKIWGTKKKKSLFEKRLPIGLMEVIKSVTPETVRAFYARHYHPERMAVIAVGDFPDGGQGVV 198
            G +Q   W    + S + +RLPIGL +VI++V+PETV+ FY + YHP+ M VIAVGDFPD  QGVV
Sbjct:  184 GRMQDAHWILMMEGSKYAERLPIGLEKVIRTVSPETVKEFYRKWYHPQNMCVIAVGDFPDT-QGVV 248          
BLAST of mRNA_H-paniculata_contig18279.4467.1 vs. uniprot
Match: D7FUN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUN6_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.350e-12
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 1
Query:   88 KSVTPETVRAFYARHYHPERMAVIAVGDFPDGGQGVV 198
            ++V PETVRAFYARHYHPERMAV+AVGDF DGG+GVV
Sbjct:  213 RTVPPETVRAFYARHYHPERMAVVAVGDFEDGGKGVV 249          
BLAST of mRNA_H-paniculata_contig18279.4467.1 vs. uniprot
Match: A0A7S1HAJ9_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HAJ9_HEMAN)

HSP 1 Score: 67.4 bits (163), Expect = 1.610e-11
Identity = 29/44 (65.91%), Postives = 38/44 (86.36%), Query Frame = 1
Query:   43 SLFEKRLPIGLMEVIKSVTPETVRAFYARHYHPERMAVIAVGDF 174
            S + KRLPIG +EVI++ +PETVR FY ++YHP+RMAV+AVGDF
Sbjct:  203 SRYAKRLPIGKLEVIRNCSPETVRGFYQKYYHPKRMAVVAVGDF 246          
BLAST of mRNA_H-paniculata_contig18279.4467.1 vs. uniprot
Match: A0A835ZEV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEV6_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.020e-10
Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 1
Query:   19 IWGTKKKKSLFEKRLPIGLMEVIKSVTPETVRAFYARHYHPERMAVIAVGDF 174
            +W +  K S+   RLPIG+M+VI++ TP+TVR +Y ++YHPE MAV+AVG F
Sbjct: 1505 LWQSIYKGSMIPDRLPIGIMDVIENATPDTVRGYYRKNYHPELMAVVAVGAF 1556          
BLAST of mRNA_H-paniculata_contig18279.4467.1 vs. uniprot
Match: A0A7S2GYU3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GYU3_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 6.970e-10
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1
Query:   37 KKSLFEKRLPIGLMEVIKSVTPETVRAFYARHYHPERMAVIAVGDFPDGGQGVVR 201
            K SL+ +R PIG + VI++V   TVR FYA+HYHP  MAVIAVGDF      VV+
Sbjct:   13 KGSLYAERSPIGTLPVIRNVPGATVRKFYAKHYHPASMAVIAVGDFAQSTSEVVK 67          
BLAST of mRNA_H-paniculata_contig18279.4467.1 vs. uniprot
Match: A4RXS3_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RXS3_OSTLU)

HSP 1 Score: 62.8 bits (151), Expect = 6.970e-10
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    1 GAIQQKIWGTKKKKSLFEKRLPIGLMEVIKSVTPETVRAFYARHYHPERMAVIAVGDFPD 180
            G   +  W T  + SL+ +R PIGL + I++  P+ +R FYA+ Y PERMAVIAVGDF D
Sbjct:  133 GRAAEAYWKTLMEGSLYAERSPIGLEDFIQNADPQVLRDFYAKWYRPERMAVIAVGDFQD 192          
BLAST of mRNA_H-paniculata_contig18279.4467.1 vs. uniprot
Match: D8SPT0_SELML (Uncharacterized protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SPT0_SELML)

HSP 1 Score: 62.4 bits (150), Expect = 9.530e-10
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    1 GAIQQKIWGTKKKKSLFEKRLPIGLMEVIKSVTPETVRAFYARHYHPERMAVIAVGDFPD 180
            G +QQ  W    + S +  RLPIGL  VI++V+ ETVR FY + YHP+ MA +AVGDF D
Sbjct:  169 GRMQQAHWLLLMQGSKYADRLPIGLENVIRNVSAETVRNFYHKWYHPKHMAFVAVGDFED 228          
BLAST of mRNA_H-paniculata_contig18279.4467.1 vs. uniprot
Match: A0A383VH24_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VH24_TETOB)

HSP 1 Score: 61.2 bits (147), Expect = 2.440e-9
Identity = 29/44 (65.91%), Postives = 32/44 (72.73%), Query Frame = 1
Query:   49 FEKRLPIGLMEVIKSVTPETVRAFYARHYHPERMAVIAVGDFPD 180
            +E RLPIGL  VIK V  E + AFY R Y P RMAV+AVGDFPD
Sbjct:  191 YENRLPIGLESVIKRVPAEAIAAFYRRWYLPHRMAVVAVGDFPD 234          
BLAST of mRNA_H-paniculata_contig18279.4467.1 vs. uniprot
Match: L1IVF5_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IVF5_GUITC)

HSP 1 Score: 60.8 bits (146), Expect = 3.330e-9
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1
Query:   43 SLFEKRLPIGLMEVIKSVTPETVRAFYARHYHPERMAVIAVGDFPDGGQGV 195
            S + +RLPIG ++VIK   P  VR FY + YHP+RMAV+AVGDF +   GV
Sbjct:  173 STYARRLPIGKIDVIKHCKPSVVRDFYKKWYHPQRMAVVAVGDFDNYSGGV 223          
BLAST of mRNA_H-paniculata_contig18279.4467.1 vs. uniprot
Match: A0A6A2ZHA0_HIBSY (Mitochondrial-processing peptidase subunit beta n=3 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZHA0_HIBSY)

HSP 1 Score: 60.5 bits (145), Expect = 4.550e-9
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 1
Query:    1 GAIQQKIWGTKKKKSLFEKRLPIGLMEVIKSVTPETVRAFYARHYHPERMAVIAVGDFPD 180
            G I    W    + S +  RLPIGL  VIK+V+P+T++ FY + YH   MAVIAVGDF D
Sbjct:  176 GRILDAYWTLMMEGSKYADRLPIGLENVIKTVSPQTLKQFYKKWYHLSNMAVIAVGDFSD 235          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18279.4467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P6SPT9_COFAR9.880e-1354.55zinc protease PQQL-like isoform X1 n=6 Tax=Coffea ... [more]
D7FUN6_ECTSI1.350e-1283.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1HAJ9_HEMAN1.610e-1165.91Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A835ZEV6_9STRA2.020e-1053.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2GYU3_9STRA6.970e-1056.36Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A4RXS3_OSTLU6.970e-1050.00Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
D8SPT0_SELML9.530e-1051.67Uncharacterized protein n=4 Tax=Selaginella moelle... [more]
A0A383VH24_TETOB2.440e-965.91Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
L1IVF5_GUITC3.330e-954.90Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A6A2ZHA0_HIBSY4.550e-950.00Mitochondrial-processing peptidase subunit beta n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18279contigH-paniculata_contig18279:4584..4784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue2.6e-10
Seed eggNOG ortholog2880.D7FUN6
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Belongs to the peptidase M16 family
EggNOG OGsCOG1025@1,KOG0959@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929420.0112126-CDS-H-paniculata_contig18279:4583..47841622929420.0112126-CDS-H-paniculata_contig18279:4583..4784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18279 4584..4784 -
1691480853.6701815-CDS-H-paniculata_contig18279:4583..47841691480853.6701815-CDS-H-paniculata_contig18279:4583..4784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18279 4584..4784 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18279.4467.1prot_H-paniculata_contig18279.4467.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18279 4584..4784 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18279.4467.1

>prot_H-paniculata_contig18279.4467.1 ID=prot_H-paniculata_contig18279.4467.1|Name=mRNA_H-paniculata_contig18279.4467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
GAIQQKIWGTKKKKSLFEKRLPIGLMEVIKSVTPETVRAFYARHYHPERM
AVIAVGDFPDGGQGVVR
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mRNA from alignment at H-paniculata_contig18279:4584..4784-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18279.4467.1 ID=mRNA_H-paniculata_contig18279.4467.1|Name=mRNA_H-paniculata_contig18279.4467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig18279:4584..4784- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGCAATACAACAAAAAATATGGGGAACAAAAAAAAAAAAAAGTCTCTT CGAAAAGAGACTACCGATCGGGCTGATGGAGGTAATCAAGAGCGTCACCC CAGAGACGGTTCGTGCTTTTTACGCGAGGCACTACCATCCCGAGCGCATG GCGGTCATTGCCGTGGGCGACTTCCCGGACGGCGGCCAAGGCGTGGTGAG A
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Coding sequence (CDS) from alignment at H-paniculata_contig18279:4584..4784-

>mRNA_H-paniculata_contig18279.4467.1 ID=mRNA_H-paniculata_contig18279.4467.1|Name=mRNA_H-paniculata_contig18279.4467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig18279:4584..4784- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGCAATACAACAAAAAATATGGGGAACAAAAAAAAAAAAAAGTCTCTT
CGAAAAGAGACTACCGATCGGGCTGATGGAGGTAATCAAGAGCGTCACCC
CAGAGACGGTTCGTGCTTTTTACGCGAGGCACTACCATCCCGAGCGCATG
GCGGTCATTGCCGTGGGCGACTTCCCGGACGGCGGCCAAGGCGTGGTGAG
AGGCGCAATACAACAAAAAATATGGGGAACAAAAAAAAAAAAAAGTCTCT
TCGAAAAGAGACTACCGATCGGGCTGATGGAGGTAATCAAGAGCGTCACC
CCAGAGACGGTTCGTGCTTTTTACGCGAGGCACTACCATCCCGAGCGCAT
GGCGGTCATTGCCGTGGGCGACTTCCCGGACGGCGGCCAAGGCGTGGTGA
GA
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