mRNA_H-paniculata_contig18273.4465.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18273.4465.1
Unique NamemRNA_H-paniculata_contig18273.4465.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18273.4465.1 vs. uniprot
Match: A0A6H5JCY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY0_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 8.490e-67
Identity = 110/114 (96.49%), Postives = 111/114 (97.37%), Query Frame = 1
Query:    4 EPPNLKRQSLRFPPVTHQWSGGHVTERNTLPVMEPVDGKPLGSPRFYKHDLLQAFSLHVFAKRPIEPITKLGDFRRAIMKRIALAALQIRLSVNSRADPPYLSVEFNQLDSPRE 345
            EPPNLKRQSLRFPPVTHQWSGGHVTERNTLPVMEPVDGKPLG PRFYKHDLLQAFSLHVFAKRPIEPIT LGDFRRAIMKRIALAALQIRLSVNSR DPP+LSVEFNQLDSPRE
Sbjct:  502 EPPNLKRQSLRFPPVTHQWSGGHVTERNTLPVMEPVDGKPLGVPRFYKHDLLQAFSLHVFAKRPIEPITSLGDFRRAIMKRIALAALQIRLSVNSRKDPPFLSVEFNQLDSPRE 615          
BLAST of mRNA_H-paniculata_contig18273.4465.1 vs. uniprot
Match: A0A836C760_9STRA (Stromal processing peptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C760_9STRA)

HSP 1 Score: 186 bits (472), Expect = 2.130e-52
Identity = 88/113 (77.88%), Postives = 96/113 (84.96%), Query Frame = 1
Query:    7 PPNLKRQSLRFPPVTHQWSGGHVTERNTLPVMEPVDGKPLGSPRFYKHDLLQAFSLHVFAKRPIEPITKLGDFRRAIMKRIALAALQIRLSVNSRADPPYLSVEFNQLDSPRE 345
            P  LK QS  FPPVTH WSGGHVTE NTLPVM+  DGKPL +PR + HDLLQAFS+HVFAKRPIEP+T LGD RRA+MKRIALAALQIRLSVNSR DPP+  +EFNQLDSPRE
Sbjct:  242 PITLKHQSKHFPPVTHVWSGGHVTEANTLPVMDTFDGKPLHAPRLFSHDLLQAFSMHVFAKRPIEPVTSLGDLRRAVMKRIALAALQIRLSVNSRTDPPFSMIEFNQLDSPRE 354          
BLAST of mRNA_H-paniculata_contig18273.4465.1 vs. uniprot
Match: W7U2D5_9STRA (Peptidase M16 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2D5_9STRA)

HSP 1 Score: 119 bits (298), Expect = 6.460e-29
Identity = 66/135 (48.89%), Postives = 83/135 (61.48%), Query Frame = 1
Query:    1 QEPPNLKRQSLRFPPVTHQWSGGHVTE--------------RNTLPVMEPVDGKPLGS------PRFYKHDLLQAFSLHVFAKRPIEPITKLGDFRRAIMKRIALAALQIRLSVNSRADPPYLSVEFNQLDSPRE 345
            QEPP LK QS  FPPVTH +SGG                  R+     E V  K  G+      PR ++H+ +QAFS H+FAKRPIE +  L D+RR++MKRIA+ ALQIRL+V +R DPP+  +EFNQLDS RE
Sbjct:  396 QEPPTLKLQSRHFPPVTHYFSGGKFDRFADASLPAELKTFGRSPRTSEESVSDKADGNAARDLTPRIFQHENIQAFSFHLFAKRPIEAVQTLADYRRSVMKRIAILALQIRLNVLARDDPPFTFIEFNQLDSARE 530          
BLAST of mRNA_H-paniculata_contig18273.4465.1 vs. uniprot
Match: A0A7R9U8H0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8H0_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.030e-28
Identity = 58/121 (47.93%), Postives = 76/121 (62.81%), Query Frame = 1
Query:   25 QSLRFPPVTHQWSGGHVTERNTLP--------------VMEPVDGKPLGSPRFYKHDLLQAFSLHVFAKRPIEPITKLGDFRRAIMKRIALAALQIRLSVNSRADPPYLSVEFNQLDSPRE 345
            QS  FPPV H W+   +     LP              V+ P         + + H+LLQ FS H+FAKRP+EP+T +  F+RAI+KR+A+AALQIRL+VN+R+DPP+  VEFNQLDSPRE
Sbjct:  322 QSKHFPPVVHDWTMSEIPPGIKLPDSLLNSAKIMPDPSVLTPKPRNVADRTKMFYHELLQGFSFHLFAKRPVEPVTTMAAFKRAILKRVAIAALQIRLNVNARSDPPFTYVEFNQLDSPRE 442          
BLAST of mRNA_H-paniculata_contig18273.4465.1 vs. uniprot
Match: D7G0R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R1_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.040e-27
Identity = 58/61 (95.08%), Postives = 59/61 (96.72%), Query Frame = 1
Query:  163 AFSLHVFAKRPIEPITKLGDFRRAIMKRIALAALQIRLSVNSRADPPYLSVEFNQLDSPRE 345
            AFSLHVFAKRPIEPIT LGDFRRAIMKRIALAALQIRLSVNSR DPP+LSVEFNQLDSPRE
Sbjct:  408 AFSLHVFAKRPIEPITSLGDFRRAIMKRIALAALQIRLSVNSRKDPPFLSVEFNQLDSPRE 468          
BLAST of mRNA_H-paniculata_contig18273.4465.1 vs. uniprot
Match: A0A8J2T2F5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2F5_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.600e-23
Identity = 58/137 (42.34%), Postives = 78/137 (56.93%), Query Frame = 1
Query:    7 PPNLKRQSLRFPPVTHQWSGGHVTERNTLP-----VMEPVDGK------PLGSP-------------RFYKHDLLQAFSLHVFAKRPIEPITKLGDFRRAIMKRIALAALQIRLSVNSRADPPYLSVEFNQLDSPRE 345
            PP LK QS  FPP+ H+WSGG   + + +P     ++E  D +      PL  P               ++H+LLQ FS H+FAKRP+E IT L + R    KRI L+ALQ+RL+V +RA+P +  VEF  LDS RE
Sbjct:  284 PPCLKAQSRHFPPIVHEWSGGRFDQTSAVPLDGERILEMTDDQKNEYLLPLDVPAVPHPSTGVPVRAHVFQHELLQQFSFHLFAKRPVERITTLAEHRAVTTKRIVLSALQVRLNVLARAEPLFSFVEFQHLDSARE 420          
BLAST of mRNA_H-paniculata_contig18273.4465.1 vs. uniprot
Match: A0A7S2EV96_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EV96_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.940e-23
Identity = 62/132 (46.97%), Postives = 80/132 (60.61%), Query Frame = 1
Query:   28 SLRFPPVTHQW--SGGHVTE--------------RNTLPVMEPVD---------GKPLGSPRFYKHDLLQAFSLHVFAKRPIEPITKLGDFRRAIMKRIALAALQIRLSVNSRADPP-YLSVEFNQLDSPRE 345
            S  +PPV H W  S G + E              + + P+ E VD         GK +  P  ++H+LLQAFSLH+FAKRP+EPIT L  FRR++ +R+ALAALQIRL+V  R+D P +  VEFNQLDS RE
Sbjct:  115 SWHYPPVRHDWCVSPGKLGELEGMEKPIDYDIHLQESYPLDEKVDFLSTEEVAPGKKI-RPHIFRHELLQAFSLHLFAKRPVEPITDLPSFRRSLARRVALAALQIRLNVGGRSDDPAFTFVEFNQLDSARE 245          
BLAST of mRNA_H-paniculata_contig18273.4465.1 vs. uniprot
Match: A0A7S0M6X5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M6X5_9CRYP)

HSP 1 Score: 102 bits (253), Expect = 7.160e-23
Identity = 50/112 (44.64%), Postives = 75/112 (66.96%), Query Frame = 1
Query:   10 PNLKRQSLRFPPVTHQWSGGHVTERNTLPVMEPVDGKPLGSPRFYKHDLLQAFSLHVFAKRPIEPITKLGDFRRAIMKRIALAALQIRLSVNSRADPPYLSVEFNQLDSPRE 345
            PNLK+ +  FPPV H+W+G  V  R+   V              ++H+L+Q+FSLHVF K P++PI  L D+RRA+++RI + ALQ+RL+V++R +P  + +EF+ LDSPRE
Sbjct:  343 PNLKQTNSFFPPVNHEWAGARVAGRDPPRV------------HVFQHELMQSFSLHVFNKHPLQPIRSLADYRRALVRRIVMVALQVRLNVHARGNPIGM-IEFSYLDSPRE 441          
BLAST of mRNA_H-paniculata_contig18273.4465.1 vs. uniprot
Match: A0A1Z5KE45_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KE45_FISSO)

HSP 1 Score: 100 bits (249), Expect = 2.620e-22
Identity = 59/133 (44.36%), Postives = 80/133 (60.15%), Query Frame = 1
Query:   22 RQSLRFPPVTHQWS--GGHVTE-------------RNTLPVMEPVD---------GKPLGSPRFYKHDLLQAFSLHVFAKRPIEPITKLGDFRRAIMKRIALAALQIRLSVNSRADPP-YLSVEFNQLDSPRE 345
            +QS  +PPV H WS    H  +             ++  P+ + VD         GK +  P  ++H+LLQAFSLH+FAKRP+EPI  L  F+R++ +R+ALAALQIRL+V  R+D P +  VEFNQLDS RE
Sbjct:  355 QQSWHYPPVRHDWSILADHKVDDMPVKPLDYDIHLQDPYPLDDKVDLLETCEVAPGKEI-RPHIFRHELLQAFSLHLFAKRPVEPIVDLKSFQRSLARRVALAALQIRLNVGGRSDDPAFTFVEFNQLDSARE 486          
BLAST of mRNA_H-paniculata_contig18273.4465.1 vs. uniprot
Match: A0A7S4HUK7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HUK7_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 6.660e-22
Identity = 62/136 (45.59%), Postives = 79/136 (58.09%), Query Frame = 1
Query:   25 QSLRFPPVTHQWS--GGHVTERNTL-----------------PVMEPVD---------GKPLGSPRFYKHDLLQAFSLHVFAKRPIEPITKLGDFRRAIMKRIALAALQIRLSVNSRADPP-YLSVEFNQLDSPRE 345
            QS  +PPV H W    G   E ++L                 P+ + VD         GK +  P  ++H+LLQAFSLH+FAKRP+E IT L  FRR++ +RIALAALQIRL+V  R+D P +  VEFNQLDS RE
Sbjct:  358 QSWHYPPVRHDWCVPAGAPVEVDSLIEPEQVIDYDIHLQEPYPLDDEVDFLKTDELAQGKKI-RPHIFRHELLQAFSLHLFAKRPVEAITDLASFRRSLARRIALAALQIRLNVGGRSDDPAFTFVEFNQLDSARE 492          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18273.4465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCY0_9PHAE8.490e-6796.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C760_9STRA2.130e-5277.88Stromal processing peptidase n=1 Tax=Tribonema min... [more]
W7U2D5_9STRA6.460e-2948.89Peptidase M16 n=2 Tax=Monodopsidaceae TaxID=425072... [more]
A0A7R9U8H0_9STRA3.030e-2847.93Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
D7G0R1_ECTSI1.040e-2795.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J2T2F5_9STRA1.600e-2342.34Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2EV96_9STRA2.940e-2346.97Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S0M6X5_9CRYP7.160e-2344.64Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A1Z5KE45_FISSO2.620e-2244.36Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S4HUK7_9STRA6.660e-2245.59Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18273contigH-paniculata_contig18273:129..967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue9.4e-24
Seed eggNOG ortholog2880.D7G0R1
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0007275,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0010154,GO:0022414,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458
EggNOG free text desc.Belongs to the peptidase M16 family
EggNOG OGsCOG1025@1,KOG0959@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929419.8812964-CDS-H-paniculata_contig18273:128..3111622929419.8812964-CDS-H-paniculata_contig18273:128..311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18273 129..311 -
1691480853.6279833-CDS-H-paniculata_contig18273:128..3111691480853.6279833-CDS-H-paniculata_contig18273:128..311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18273 129..311 -
1622929419.8976011-CDS-H-paniculata_contig18273:805..9671622929419.8976011-CDS-H-paniculata_contig18273:805..967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18273 806..967 -
1691480853.6388977-CDS-H-paniculata_contig18273:805..9671691480853.6388977-CDS-H-paniculata_contig18273:805..967Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18273 806..967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18273.4465.1prot_H-paniculata_contig18273.4465.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18273 129..967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18273.4465.1

>prot_H-paniculata_contig18273.4465.1 ID=prot_H-paniculata_contig18273.4465.1|Name=mRNA_H-paniculata_contig18273.4465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
QEPPNLKRQSLRFPPVTHQWSGGHVTERNTLPVMEPVDGKPLGSPRFYKH
DLLQAFSLHVFAKRPIEPITKLGDFRRAIMKRIALAALQIRLSVNSRADP
PYLSVEFNQLDSPRE
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mRNA from alignment at H-paniculata_contig18273:129..967-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18273.4465.1 ID=mRNA_H-paniculata_contig18273.4465.1|Name=mRNA_H-paniculata_contig18273.4465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=839bp|location=Sequence derived from alignment at H-paniculata_contig18273:129..967- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAACCTCCCAACCTGAAGCGACAGTCTCTTCGATTTCCTCCGGTGAC TCACCAGTGGTCTGGAGGACATGTTACCGAGCGAAACACCCTTCCTGTTA TGGAACCTGTGGACGGGAAGCCGTTGGGCAGTCCTCGCTTTTACAAGCAC GATCTGCTGCAGGTTTGTTTCGTTTCTTGATGGTATTGTCTTTTTCCGTT GTGGCGGCTGATTGATGTCCATCCTACTTGAGGATATAGGGGTGTGTTTG TCATGGTTCGATCGCTTTTGTGCAACGTTCGTCTTCCGAAAATCTCATGG TGGTTTTGTCGTTGTCGCGACTGTCTTTGATGGTGATGTTGATGTTGAGG TGGGGATAATGGCATGATTGTCAACTCGAAGCGTTTGCAGGTGGCTTGTC AGGTTTCTTGTCAGGTGGCTCATGAGTCACCCTTGCTGTCCTCTCCCCTA CCGCACTGCCATTTTCTTCCCTCATTTCTCATATACCTTTTCATAATGAT TATGTCGTTTTTTTCACGTCGTGTCAAGTGTACGGCTGAACGTGTGTCTT CACGGGTACGCCCTAGAGCCTACCACAGTGCCCGTTCGAGTAAGCTGGTC TTTGACCCAGTACCTTACCCGTATGCATGTCCGTATCCCCTATTGTCATT TTCCAGGCTTTCTCGCTGCACGTGTTCGCGAAGCGGCCTATCGAGCCAAT CACGAAGCTTGGAGATTTCCGCCGCGCCATCATGAAGAGGATCGCTCTGG CTGCGCTTCAGATACGGCTGTCCGTGAACTCGAGGGCAGATCCGCCCTAC CTGAGCGTTGAGTTCAACCAGCTCGATTCTCCCAGAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig18273:129..967-

>mRNA_H-paniculata_contig18273.4465.1 ID=mRNA_H-paniculata_contig18273.4465.1|Name=mRNA_H-paniculata_contig18273.4465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig18273:129..967- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAACCTCCCAACCTGAAGCGACAGTCTCTTCGATTTCCTCCGGTGAC
TCACCAGTGGTCTGGAGGACATGTTACCGAGCGAAACACCCTTCCTGTTA
TGGAACCTGTGGACGGGAAGCCGTTGGGCAGTCCTCGCTTTTACAAGCAC
GATCTGCTGCAGCAGGAACCTCCCAACCTGAAGCGACAGTCTCTTCGATT
TCCTCCGGTGACTCACCAGTGGTCTGGAGGACATGTTACCGAGCGAAACA
CCCTTCCTGTTATGGAACCTGTGGACGGGAAGCCGTTGGGCAGTCCTCGC
TTTTACAAGCACGATCTGCTGCAGGCTTTCTCGCTGCACGTGTTCGCGAA
GCGGCCTATCGAGCCAATCACGAAGCTTGGAGATTTCCGCCGCGCCATCA
TGAAGAGGATCGCTCTGGCTGCGCTTCAGATACGGCTGTCCGTGAACTCG
AGGGCAGATCCGCCCTACCTGAGCGTTGAGTTCAACCAGCTCGATTCTCC
CAGAGAGGCTTTCTCGCTGCACGTGTTCGCGAAGCGGCCTATCGAGCCAA
TCACGAAGCTTGGAGATTTCCGCCGCGCCATCATGAAGAGGATCGCTCTG
GCTGCGCTTCAGATACGGCTGTCCGTGAACTCGAGGGCAGATCCGCCCTA
CCTGAGCGTTGAGTTCAACCAGCTCGATTCTCCCAGAGAG
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